Wall clock time and date at job start Tue Mar 31 2020 08:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46809 * 2 1 4 4 C 1.52999 * 109.47393 * 240.00006 * 2 1 3 5 5 H 1.09001 * 109.50016 * 60.07561 * 4 2 1 6 6 C 1.53117 * 109.50349 * 300.00137 * 4 2 1 7 7 C 1.53115 * 109.15949 * 182.40453 * 6 4 2 8 8 C 1.53037 * 109.28219 * 57.65347 * 7 6 4 9 9 N 1.46855 * 109.52039 * 300.81961 * 8 7 6 10 10 C 1.46894 * 110.99877 * 185.83739 * 9 8 7 11 11 C 1.50706 * 109.47409 * 293.95692 * 10 9 8 12 12 C 1.38305 * 119.92459 * 269.72696 * 11 10 9 13 13 C 1.38099 * 120.06260 * 179.72185 * 12 11 10 14 14 C 1.38878 * 119.93256 * 0.54861 * 13 12 11 15 15 O 1.35754 * 120.06889 * 179.74532 * 14 13 12 16 16 C 1.34838 * 116.99846 * 174.44391 * 15 14 13 17 17 H 1.07996 * 119.99760 * 5.05361 * 16 15 14 18 18 C 1.38650 * 119.99640 * 185.05768 * 16 15 14 19 19 N 1.31557 * 120.00561 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99694 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47146 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46861 * 120.00158 * 20 18 16 23 23 H 1.48500 * 109.47262 * 240.00367 * 20 18 16 24 24 C 1.38882 * 119.86499 * 359.72419 * 14 13 12 25 25 C 1.38105 * 119.92509 * 0.02562 * 24 14 13 26 26 C 1.46847 * 111.19624 * 61.74099 * 9 8 7 27 27 H 1.08999 * 109.47250 * 60.00078 * 1 2 3 28 28 H 1.08998 * 109.46578 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47230 * 299.99874 * 1 2 3 30 30 H 1.08999 * 109.47250 * 119.99922 * 2 1 3 31 31 H 1.08997 * 109.47122 * 60.00060 * 3 2 1 32 32 H 1.08996 * 109.46939 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47151 * 299.99982 * 3 2 1 34 34 H 1.09000 * 109.51956 * 302.30918 * 6 4 2 35 35 H 1.08993 * 109.52427 * 62.49378 * 6 4 2 36 36 H 1.09010 * 109.50193 * 177.59288 * 7 6 4 37 37 H 1.09002 * 109.50447 * 297.70533 * 7 6 4 38 38 H 1.09004 * 109.46439 * 60.83322 * 8 7 6 39 39 H 1.08993 * 109.46344 * 180.80674 * 8 7 6 40 40 H 1.09004 * 109.47314 * 53.95491 * 10 9 8 41 41 H 1.08996 * 109.47623 * 173.95473 * 10 9 8 42 42 H 1.07993 * 119.96690 * 0.02562 * 12 11 10 43 43 H 1.08005 * 120.03661 * 180.27417 * 13 12 11 44 44 H 0.96991 * 120.00132 * 179.97438 * 19 18 16 45 45 H 1.07994 * 120.03560 * 180.02562 * 24 14 13 46 46 H 1.07996 * 119.96313 * 180.02562 * 25 24 14 47 47 H 1.08997 * 109.46186 * 178.24179 * 26 9 8 48 48 H 1.08998 * 109.46330 * 58.27101 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 1 1.6781 -0.2070 -2.1395 6 6 1.5301 -2.1650 -1.2500 7 6 2.0938 -2.8964 -2.4713 8 6 3.6226 -2.8381 -2.4342 9 7 4.0604 -1.4363 -2.4356 10 6 5.5225 -1.3415 -2.5399 11 6 6.1531 -1.9128 -1.2960 12 6 6.4135 -1.0909 -0.2146 13 6 6.9859 -1.6126 0.9288 14 6 7.3106 -2.9616 0.9877 15 8 7.8781 -3.4762 2.1084 16 6 8.0620 -4.8116 2.1436 17 1 7.8379 -5.4106 1.2734 18 6 8.5387 -5.4155 3.2970 19 7 8.8111 -4.6859 4.3573 20 14 8.7927 -7.2656 3.3460 21 1 8.4147 -7.8520 2.0351 22 1 10.2204 -7.5618 3.6270 23 1 7.9455 -7.8535 4.4145 24 6 7.0530 -3.7832 -0.1020 25 6 6.4756 -3.2565 -1.2406 26 6 3.5704 -0.7258 -1.2475 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.8587 -2.6678 -0.3405 35 1 0.4411 -2.1666 -1.2949 36 1 1.7688 -3.9368 -2.4545 37 1 1.7333 -2.4167 -3.3813 38 1 3.9830 -3.3302 -1.5308 39 1 4.0268 -3.3456 -3.3100 40 1 5.8619 -1.9034 -3.4102 41 1 5.8123 -0.2962 -2.6468 42 1 6.1644 -0.0412 -0.2626 43 1 7.1850 -0.9712 1.7747 44 1 9.1442 -5.1085 5.1642 45 1 7.3040 -4.8327 -0.0589 46 1 6.2747 -3.8949 -2.0882 47 1 3.9367 0.3007 -1.2614 48 1 3.9310 -1.2279 -0.3497 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781983297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:26 Heat of formation + Delta-G solvation = -24.400145 kcal Electronic energy + Delta-G solvation = -25416.891249 eV Core-core repulsion = 22050.284173 eV Total energy + Delta-G solvation = -3366.607076 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.87861 -38.75985 -36.93761 -35.42791 -32.99572 -32.21717 -30.40464 -29.63109 -29.18597 -27.44820 -25.90028 -24.99382 -23.48601 -22.55541 -21.80521 -20.66309 -19.90171 -19.49749 -18.01166 -16.95895 -15.99840 -15.40613 -14.87324 -14.65440 -14.55080 -14.24553 -14.16357 -14.00393 -13.78568 -13.54790 -13.48021 -13.15160 -12.86036 -12.74372 -12.42681 -12.35368 -12.14018 -11.75269 -11.50648 -11.39411 -11.28394 -11.17625 -11.02530 -10.95886 -10.81786 -10.75226 -10.59004 -10.46245 -10.44022 -10.09152 -9.98022 -9.36284 -8.86261 -8.20376 -8.10575 -7.20518 -6.48396 -4.07368 2.17466 2.25697 3.09603 3.11248 3.16772 3.93680 4.11768 4.54822 4.68368 4.77468 4.83676 5.04510 5.06559 5.15503 5.22883 5.24144 5.32309 5.44474 5.49442 5.54789 5.55944 5.63819 5.66572 5.71692 5.77623 5.81970 5.86179 5.88040 5.95923 5.98605 6.00826 6.06491 6.09511 6.12692 6.16998 6.20773 6.27836 6.37740 6.39141 6.54184 6.66814 6.86706 7.01609 7.16491 7.24234 7.30917 7.39114 7.42792 7.79154 7.96686 8.97368 9.67220 10.69659 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.003472 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.845600 B = 8061.864468 C = 8267.233121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.077 4.077 5 H 0.073 0.927 6 C -0.118 4.118 7 C -0.115 4.115 8 C 0.051 3.949 9 N -0.530 5.530 10 C 0.109 3.891 11 C -0.220 4.220 12 C -0.062 4.062 13 C -0.194 4.194 14 C 0.156 3.844 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.235 4.235 25 C -0.060 4.060 26 C 0.057 3.943 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.270 0.730 45 H 0.125 0.875 46 H 0.103 0.897 47 H 0.071 0.929 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 6.783 -11.731 19.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.095 4.095 5 H 0.091 0.909 6 C -0.155 4.155 7 C -0.153 4.153 8 C -0.077 4.077 9 N -0.253 5.253 10 C -0.019 4.019 11 C -0.223 4.223 12 C -0.081 4.081 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.254 4.254 25 C -0.079 4.079 26 C -0.071 4.071 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.143 0.857 46 H 0.122 0.878 47 H 0.089 0.911 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.387 7.073 -11.711 19.141 hybrid contribution 0.590 -1.432 0.823 1.754 sum -12.797 5.640 -10.888 17.724 Atomic orbital electron populations 1.21866 0.95448 1.01680 1.01358 1.21130 0.95516 0.96233 0.98339 1.21878 1.01410 0.95897 1.01344 1.21207 0.95049 0.95564 0.97718 0.90862 1.21679 0.99901 0.95539 0.98393 1.21569 0.95272 0.99854 0.98584 1.22096 0.95062 0.89527 1.01050 1.62404 1.10335 1.13211 1.39313 1.20933 0.85792 1.00462 0.94668 1.19950 1.09598 0.94605 0.98110 1.20493 0.97240 0.97955 0.92414 1.20208 1.08042 0.93509 0.99573 1.19391 0.90515 0.92580 0.87324 1.83981 1.67039 1.24548 1.32561 1.21372 1.45529 0.79603 1.00319 0.89060 1.25290 0.96502 1.00440 0.94253 1.70044 1.41085 1.35905 1.02648 0.85654 0.78414 0.80609 0.78804 1.19103 1.20094 1.20095 1.21152 1.08733 1.00876 0.94655 1.20604 0.96570 0.94143 0.96592 1.22187 0.94087 0.98568 0.92246 0.92889 0.92519 0.93006 0.91201 0.93004 0.92282 0.92840 0.92195 0.91966 0.91984 0.91617 0.93782 0.91440 0.91013 0.90918 0.87396 0.86674 0.92039 0.85697 0.87842 0.91092 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 2 C -0.09 -0.95 2.51 -90.62 -0.23 -1.18 16 3 C -0.15 -1.41 8.85 37.16 0.33 -1.08 16 4 C -0.08 -0.84 1.94 -90.54 -0.18 -1.02 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 6 C -0.12 -1.29 4.86 -26.61 -0.13 -1.42 16 7 C -0.11 -1.27 6.09 -26.65 -0.16 -1.43 16 8 C 0.05 0.65 4.82 -3.83 -0.02 0.63 16 9 N -0.53 -6.92 4.86 -236.11 -1.15 -8.07 16 10 C 0.11 1.48 5.55 -4.98 -0.03 1.45 16 11 C -0.22 -3.66 4.03 -104.57 -0.42 -4.08 16 12 C -0.06 -1.09 8.02 -39.61 -0.32 -1.41 16 13 C -0.19 -4.09 9.99 -39.40 -0.39 -4.48 16 14 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 15 O -0.18 -5.10 9.76 0.01 0.00 -5.10 16 16 C -0.39 -10.97 9.49 30.88 0.29 -10.68 16 17 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 20 Si 0.94 20.52 29.55 -169.99 -5.02 15.49 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 C -0.23 -5.09 9.17 -39.39 -0.36 -5.45 16 25 C -0.06 -1.09 8.10 -39.61 -0.32 -1.41 16 26 C 0.06 0.73 3.46 -3.84 -0.01 0.72 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.49 6.49 -51.93 -0.34 0.16 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.59 6.46 -51.93 -0.34 0.26 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.60 6.58 -51.93 -0.34 0.26 16 36 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.67 6.55 -51.93 -0.34 0.33 16 39 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 40 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 41 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.11 1.62 8.03 -52.49 -0.42 1.20 16 43 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 46 H 0.10 1.64 8.03 -52.49 -0.42 1.21 16 47 H 0.07 0.87 6.46 -51.93 -0.34 0.54 16 48 H 0.05 0.71 6.48 -51.93 -0.34 0.37 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -29.38 366.73 -9.91 -39.29 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.05 Total: 4.68 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.97 Total: -27.31 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: -0.39 Total: -32.59 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.38 -9.91 -39.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781983297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.892 kcal (2) G-P(sol) polarization free energy of solvation -29.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds