Wall clock time and date at job start Tue Mar 31 2020 08:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46809 * 2 1 4 4 C 1.52999 * 109.47393 * 240.00006 * 2 1 3 5 5 H 1.09001 * 109.50016 * 60.07561 * 4 2 1 6 6 C 1.53117 * 109.50349 * 300.00137 * 4 2 1 7 7 C 1.53115 * 109.15949 * 182.40453 * 6 4 2 8 8 C 1.53037 * 109.28219 * 57.65347 * 7 6 4 9 9 N 1.46855 * 109.52039 * 300.81961 * 8 7 6 10 10 C 1.46894 * 110.99877 * 185.83739 * 9 8 7 11 11 C 1.50706 * 109.47409 * 293.95692 * 10 9 8 12 12 C 1.38305 * 119.92459 * 269.72696 * 11 10 9 13 13 C 1.38099 * 120.06260 * 179.72185 * 12 11 10 14 14 C 1.38878 * 119.93256 * 0.54861 * 13 12 11 15 15 O 1.35754 * 120.06889 * 179.74532 * 14 13 12 16 16 C 1.34838 * 116.99846 * 174.44391 * 15 14 13 17 17 H 1.07996 * 119.99760 * 5.05361 * 16 15 14 18 18 C 1.38650 * 119.99640 * 185.05768 * 16 15 14 19 19 N 1.31557 * 120.00561 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99694 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47146 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46861 * 120.00158 * 20 18 16 23 23 H 1.48500 * 109.47262 * 240.00367 * 20 18 16 24 24 C 1.38882 * 119.86499 * 359.72419 * 14 13 12 25 25 C 1.38105 * 119.92509 * 0.02562 * 24 14 13 26 26 C 1.46847 * 111.19624 * 61.74099 * 9 8 7 27 27 H 1.08999 * 109.47250 * 60.00078 * 1 2 3 28 28 H 1.08998 * 109.46578 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47230 * 299.99874 * 1 2 3 30 30 H 1.08999 * 109.47250 * 119.99922 * 2 1 3 31 31 H 1.08997 * 109.47122 * 60.00060 * 3 2 1 32 32 H 1.08996 * 109.46939 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47151 * 299.99982 * 3 2 1 34 34 H 1.09000 * 109.51956 * 302.30918 * 6 4 2 35 35 H 1.08993 * 109.52427 * 62.49378 * 6 4 2 36 36 H 1.09010 * 109.50193 * 177.59288 * 7 6 4 37 37 H 1.09002 * 109.50447 * 297.70533 * 7 6 4 38 38 H 1.09004 * 109.46439 * 60.83322 * 8 7 6 39 39 H 1.08993 * 109.46344 * 180.80674 * 8 7 6 40 40 H 1.09004 * 109.47314 * 53.95491 * 10 9 8 41 41 H 1.08996 * 109.47623 * 173.95473 * 10 9 8 42 42 H 1.07993 * 119.96690 * 0.02562 * 12 11 10 43 43 H 1.08005 * 120.03661 * 180.27417 * 13 12 11 44 44 H 0.96991 * 120.00132 * 179.97438 * 19 18 16 45 45 H 1.07994 * 120.03560 * 180.02562 * 24 14 13 46 46 H 1.07996 * 119.96313 * 180.02562 * 25 24 14 47 47 H 1.08997 * 109.46186 * 178.24179 * 26 9 8 48 48 H 1.08998 * 109.46330 * 58.27101 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 1 1.6781 -0.2070 -2.1395 6 6 1.5301 -2.1650 -1.2500 7 6 2.0938 -2.8964 -2.4713 8 6 3.6226 -2.8381 -2.4342 9 7 4.0604 -1.4363 -2.4356 10 6 5.5225 -1.3415 -2.5399 11 6 6.1531 -1.9128 -1.2960 12 6 6.4135 -1.0909 -0.2146 13 6 6.9859 -1.6126 0.9288 14 6 7.3106 -2.9616 0.9877 15 8 7.8781 -3.4762 2.1084 16 6 8.0620 -4.8116 2.1436 17 1 7.8379 -5.4106 1.2734 18 6 8.5387 -5.4155 3.2970 19 7 8.8111 -4.6859 4.3573 20 14 8.7927 -7.2656 3.3460 21 1 8.4147 -7.8520 2.0351 22 1 10.2204 -7.5618 3.6270 23 1 7.9455 -7.8535 4.4145 24 6 7.0530 -3.7832 -0.1020 25 6 6.4756 -3.2565 -1.2406 26 6 3.5704 -0.7258 -1.2475 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.8587 -2.6678 -0.3405 35 1 0.4411 -2.1666 -1.2949 36 1 1.7688 -3.9368 -2.4545 37 1 1.7333 -2.4167 -3.3813 38 1 3.9830 -3.3302 -1.5308 39 1 4.0268 -3.3456 -3.3100 40 1 5.8619 -1.9034 -3.4102 41 1 5.8123 -0.2962 -2.6468 42 1 6.1644 -0.0412 -0.2626 43 1 7.1850 -0.9712 1.7747 44 1 9.1442 -5.1085 5.1642 45 1 7.3040 -4.8327 -0.0589 46 1 6.2747 -3.8949 -2.0882 47 1 3.9367 0.3007 -1.2614 48 1 3.9310 -1.2279 -0.3497 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781983297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:24 Heat of formation + Delta-G solvation = -40.702700 kcal Electronic energy + Delta-G solvation = -25417.598181 eV Core-core repulsion = 22050.284173 eV Total energy + Delta-G solvation = -3367.314008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19760 -40.22918 -38.42615 -36.57143 -34.43327 -33.82883 -31.95453 -30.87679 -30.38077 -28.31173 -27.58012 -26.46438 -24.52044 -23.73315 -23.34205 -22.07075 -20.87083 -20.48995 -19.87591 -18.83198 -17.05953 -16.59506 -16.48049 -16.16526 -15.97089 -15.58652 -15.32316 -15.24080 -15.07280 -14.85073 -14.58809 -14.48011 -14.29636 -14.00372 -13.65661 -13.55089 -13.23373 -12.99101 -12.92132 -12.54562 -12.52511 -12.45234 -12.28797 -12.21140 -12.13378 -12.05308 -11.83281 -11.67323 -11.36782 -11.20819 -10.99109 -10.89788 -10.80435 -9.80647 -9.27985 -8.92096 -8.50843 -6.19342 0.54623 0.63571 1.32000 1.40284 1.50365 2.14384 2.75141 3.04483 3.21700 3.47914 3.80026 3.86537 3.94308 4.02681 4.09098 4.13197 4.22836 4.29650 4.34680 4.42937 4.54499 4.57583 4.64519 4.71430 4.74284 4.77581 4.86365 4.87519 4.96814 4.99569 5.04402 5.05376 5.08101 5.08589 5.10911 5.15555 5.20671 5.25626 5.27103 5.37142 5.42410 5.52184 5.55103 5.64840 5.67269 5.73931 5.99100 6.18110 6.19769 6.24378 6.93857 7.74353 8.72635 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016595 B = 0.003472 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.845600 B = 8061.864468 C = 8267.233121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.070 4.070 5 H 0.083 0.917 6 C -0.118 4.118 7 C -0.111 4.111 8 C 0.048 3.952 9 N -0.521 5.521 10 C 0.109 3.891 11 C -0.191 4.191 12 C -0.053 4.053 13 C -0.206 4.206 14 C 0.115 3.885 15 O -0.233 6.233 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.022 4.022 19 N -0.920 5.920 20 Si 1.018 2.982 21 H -0.252 1.252 22 H -0.267 1.267 23 H -0.268 1.268 24 C -0.244 4.244 25 C -0.057 4.057 26 C 0.058 3.942 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.016 0.984 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.142 0.858 43 H 0.110 0.890 44 H 0.273 0.727 45 H 0.115 0.885 46 H 0.134 0.866 47 H 0.080 0.920 48 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.276 7.253 -15.061 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.089 4.089 5 H 0.101 0.899 6 C -0.155 4.155 7 C -0.149 4.149 8 C -0.080 4.080 9 N -0.243 5.243 10 C -0.019 4.019 11 C -0.193 4.193 12 C -0.072 4.072 13 C -0.226 4.226 14 C 0.064 3.936 15 O -0.140 6.140 16 C -0.490 4.490 17 H 0.117 0.883 18 C -0.220 4.220 19 N -0.558 5.558 20 Si 0.837 3.163 21 H -0.175 1.175 22 H -0.192 1.192 23 H -0.193 1.193 24 C -0.263 4.263 25 C -0.076 4.076 26 C -0.070 4.070 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.034 0.966 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.160 0.840 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.152 0.848 47 H 0.098 0.902 48 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -15.342 7.573 -15.096 22.817 hybrid contribution 1.013 -1.350 1.613 2.334 sum -14.328 6.223 -13.483 20.635 Atomic orbital electron populations 1.21834 0.94148 1.01927 1.02104 1.21114 0.96617 0.96412 0.97097 1.21864 1.00927 0.95445 1.02127 1.21160 0.93661 0.95702 0.98334 0.89911 1.21685 1.00945 0.95369 0.97519 1.21557 0.93851 1.00604 0.98870 1.22171 0.96507 0.89109 1.00214 1.62475 1.09567 1.13310 1.38971 1.21115 0.85881 1.01727 0.93147 1.20489 1.06126 0.93818 0.98913 1.20862 0.95429 0.99740 0.91149 1.20449 1.08619 0.92537 1.00964 1.19923 0.92162 0.94110 0.87360 1.83943 1.70114 1.24942 1.34989 1.21842 1.46011 0.80071 1.01110 0.88289 1.26588 0.95884 1.06013 0.93465 1.70185 1.43573 1.38415 1.03660 0.84539 0.78682 0.73568 0.79474 1.17543 1.19157 1.19252 1.21235 1.09398 1.00357 0.95336 1.20933 0.95225 0.95301 0.96114 1.22213 0.95506 0.98550 0.90741 0.91788 0.92534 0.92632 0.93336 0.92631 0.93005 0.91685 0.94414 0.90339 0.91134 0.90394 0.96602 0.90122 0.89154 0.88985 0.84048 0.87220 0.91787 0.86697 0.84788 0.90161 0.96691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.84 71.98 0.64 -1.57 16 2 C -0.09 -1.76 2.51 -10.79 -0.03 -1.78 16 3 C -0.15 -2.48 8.85 71.98 0.64 -1.85 16 4 C -0.07 -1.37 1.94 -10.74 -0.02 -1.39 16 5 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 6 C -0.12 -2.36 4.86 30.67 0.15 -2.21 16 7 C -0.11 -2.13 6.09 30.65 0.19 -1.94 16 8 C 0.05 1.10 4.82 86.32 0.42 1.51 16 9 N -0.52 -11.77 4.86 -900.93 -4.38 -16.14 16 10 C 0.11 2.50 5.55 85.56 0.48 2.98 16 11 C -0.19 -5.89 4.03 -19.83 -0.08 -5.97 16 12 C -0.05 -1.80 8.02 22.25 0.18 -1.62 16 13 C -0.21 -8.98 9.99 22.39 0.22 -8.75 16 14 C 0.11 5.84 6.65 22.58 0.15 5.99 16 15 O -0.23 -14.33 9.76 -22.87 -0.22 -14.56 16 16 C -0.41 -24.56 9.49 67.92 0.64 -23.91 16 17 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 18 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 19 N -0.92 -57.10 13.67 21.61 0.30 -56.80 16 20 Si 1.02 43.35 29.55 68.60 2.03 45.37 16 21 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.24 -10.84 9.17 22.39 0.21 -10.63 16 25 C -0.06 -1.98 8.10 22.25 0.18 -1.80 16 26 C 0.06 1.34 3.46 86.32 0.30 1.64 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.87 6.49 -2.39 -0.02 0.85 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.94 6.46 -2.39 -0.02 0.92 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.32 6.58 -2.39 -0.02 1.31 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.02 0.45 6.55 -2.38 -0.02 0.44 16 39 H 0.08 1.64 8.06 -2.39 -0.02 1.62 16 40 H 0.09 1.85 8.00 -2.39 -0.02 1.83 16 41 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 42 H 0.14 3.83 8.03 -2.91 -0.02 3.81 16 43 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 44 H 0.27 15.44 8.31 -92.72 -0.77 14.67 16 45 H 0.12 5.24 5.64 -2.91 -0.02 5.23 16 46 H 0.13 3.84 8.03 -2.91 -0.02 3.82 16 47 H 0.08 1.72 6.46 -2.39 -0.02 1.71 16 48 H 0.01 0.44 6.48 -2.39 -0.02 0.43 16 Total: -1.00 -69.02 366.73 3.36 -65.66 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: 0.92 Total: 28.59 kcal Atomic # 6 Polarization: -56.84 SS G_CDS: 4.72 Total: -52.12 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -4.08 Total: -72.94 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.22 Total: -14.56 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -69.02 3.36 -65.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781983297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.955 kcal (2) G-P(sol) polarization free energy of solvation -69.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds