Wall clock time and date at job start Tue Mar 31 2020 09:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46927 * 2 1 4 4 C 1.52997 * 109.46927 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47337 * 305.00090 * 4 3 2 6 6 C 1.53001 * 109.47235 * 65.00395 * 4 3 2 7 7 C 1.52996 * 109.47395 * 62.20256 * 6 4 3 8 8 C 1.50705 * 109.47098 * 184.99886 * 4 3 2 9 9 O 1.21273 * 120.00069 * 333.83368 * 8 4 3 10 10 N 1.34774 * 119.99765 * 153.82926 * 8 4 3 11 11 C 1.46499 * 119.99841 * 184.56620 * 10 8 4 12 12 H 1.09001 * 109.47016 * 14.55326 * 11 10 8 13 13 C 1.52999 * 109.47141 * 254.54953 * 11 10 8 14 14 C 1.50697 * 109.47182 * 65.42790 * 13 11 10 15 15 H 1.08003 * 119.99867 * 3.70325 * 14 13 11 16 16 C 1.37872 * 120.00245 * 183.70535 * 14 13 11 17 17 N 1.31515 * 120.00106 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 120.00061 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46897 * 59.99841 * 18 16 14 20 20 H 1.48503 * 109.46973 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47204 * 300.00022 * 18 16 14 22 22 C 1.50698 * 109.47210 * 134.55236 * 11 10 8 23 23 C 1.38233 * 120.00325 * 220.00242 * 22 11 10 24 24 C 1.38234 * 120.00094 * 179.97438 * 23 22 11 25 25 C 1.38226 * 120.00462 * 359.95425 * 24 23 22 26 26 C 1.38243 * 119.99849 * 359.97438 * 25 24 23 27 27 C 1.38237 * 119.99679 * 0.06838 * 26 25 24 28 28 H 1.09003 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47196 * 299.99847 * 1 2 3 30 30 H 1.09000 * 109.47494 * 59.99599 * 1 2 3 31 31 H 1.09002 * 109.47196 * 240.00153 * 2 1 3 32 32 H 1.08997 * 109.47134 * 120.00055 * 2 1 3 33 33 H 1.09002 * 109.47058 * 60.00068 * 3 2 1 34 34 H 1.08997 * 109.47258 * 299.99979 * 3 2 1 35 35 H 1.09002 * 109.47363 * 182.20804 * 6 4 3 36 36 H 1.09005 * 109.46802 * 302.20455 * 6 4 3 37 37 H 1.09003 * 109.47253 * 58.55416 * 7 6 4 38 38 H 1.08996 * 109.47551 * 178.55453 * 7 6 4 39 39 H 1.09008 * 109.47162 * 298.55790 * 7 6 4 40 40 H 0.97005 * 120.00376 * 4.56903 * 10 8 4 41 41 H 1.09002 * 109.47139 * 185.42739 * 13 11 10 42 42 H 1.09004 * 109.47347 * 305.42712 * 13 11 10 43 43 H 0.97005 * 119.99791 * 180.02562 * 17 16 14 44 44 H 1.08000 * 119.99917 * 359.96954 * 23 22 11 45 45 H 1.08007 * 119.99704 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.00757 * 179.72348 * 25 24 23 47 47 H 1.08003 * 119.99837 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.99604 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9329 0.8532 0.8427 6 6 4.0805 0.8328 -1.3064 7 6 3.6168 1.6911 -2.4850 8 6 4.0722 2.8580 0.1245 9 8 3.3858 3.7808 -0.2602 10 7 5.2842 3.0982 0.6627 11 6 5.7310 4.4772 0.8752 12 1 4.8797 5.1523 0.7887 13 6 6.7799 4.8413 -0.1775 14 6 6.1415 4.8446 -1.5425 15 1 5.0806 4.6694 -1.6429 16 6 6.9119 5.0714 -2.6633 17 7 8.2039 5.2843 -2.5411 18 14 6.1206 5.0747 -4.3555 19 1 5.0816 6.1341 -4.4140 20 1 7.1567 5.3394 -5.3859 21 1 5.4946 3.7528 -4.6119 22 6 6.3345 4.6034 2.2503 23 6 6.0871 5.7294 3.0130 24 6 6.6402 5.8449 4.2746 25 6 7.4401 4.8342 4.7738 26 6 7.6865 3.7074 4.0116 27 6 7.1340 3.5923 2.7497 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 5.1698 0.7968 -1.2895 36 1 3.6852 -0.1773 -1.4149 37 1 3.9906 2.7078 -2.3634 38 1 4.0020 1.2712 -3.4141 39 1 2.5273 1.7061 -2.5172 40 1 5.8608 2.3581 0.9094 41 1 7.1823 5.8312 0.0379 42 1 7.5866 4.1086 -0.1554 43 1 8.7458 5.4442 -3.3297 44 1 5.4616 6.5189 2.6233 45 1 6.4472 6.7249 4.8703 46 1 7.8760 4.9264 5.7577 47 1 8.3118 2.9179 4.4015 48 1 7.3268 2.7122 2.1541 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821175843.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:43 Heat of formation + Delta-G solvation = -65.560911 kcal Electronic energy + Delta-G solvation = -25602.228501 eV Core-core repulsion = 22233.836560 eV Total energy + Delta-G solvation = -3368.391941 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.24364 -39.99368 -37.50443 -36.40417 -34.73060 -33.77960 -32.42272 -31.69256 -30.55254 -29.63980 -26.94524 -25.75314 -23.95831 -23.74573 -23.37722 -22.02471 -21.16994 -20.27101 -18.65826 -17.86177 -17.57817 -16.92229 -16.70767 -16.48606 -16.08847 -15.85513 -15.36394 -14.95002 -14.78081 -14.51044 -14.39620 -14.19518 -14.13542 -13.82960 -13.63608 -13.50761 -13.34683 -12.97022 -12.84144 -12.73291 -12.70141 -12.45627 -12.15819 -12.08693 -11.84288 -11.82025 -11.79026 -11.78721 -11.49273 -11.24054 -11.15198 -10.62506 -10.39502 -9.82143 -9.75183 -9.50187 -8.18757 -6.24093 0.49285 0.55145 1.31779 1.33668 1.42362 1.91512 2.38484 2.44547 2.97117 3.15054 3.78132 3.83988 3.91391 4.00207 4.03324 4.20919 4.27293 4.31156 4.33220 4.40420 4.45283 4.53821 4.68302 4.69878 4.75554 4.78629 4.85819 4.88554 4.91461 5.02214 5.12362 5.14019 5.17368 5.19607 5.21178 5.28211 5.35918 5.43537 5.47121 5.49686 5.60412 5.61471 5.65005 5.67232 5.82443 5.95068 6.16879 6.28364 6.80235 6.91874 7.42506 7.55779 8.92408 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008294 B = 0.006413 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3375.029169 B = 4364.772118 C = 7084.015039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.098 4.098 4 C -0.098 4.098 5 H 0.117 0.883 6 C -0.104 4.104 7 C -0.159 4.159 8 C 0.515 3.485 9 O -0.582 6.582 10 N -0.702 5.702 11 C 0.195 3.805 12 H 0.063 0.937 13 C 0.035 3.965 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.010 3.990 17 N -0.929 5.929 18 Si 0.940 3.060 19 H -0.280 1.280 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.096 4.096 23 C -0.135 4.135 24 C -0.120 4.120 25 C -0.127 4.127 26 C -0.118 4.118 27 C -0.123 4.123 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.024 0.976 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.404 0.596 41 H -0.009 1.009 42 H 0.006 0.994 43 H 0.261 0.739 44 H 0.112 0.888 45 H 0.144 0.856 46 H 0.152 0.848 47 H 0.150 0.850 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.913 -12.245 12.707 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.136 4.136 4 C -0.119 4.119 5 H 0.135 0.865 6 C -0.141 4.141 7 C -0.216 4.216 8 C 0.303 3.697 9 O -0.462 6.462 10 N -0.352 5.352 11 C 0.090 3.910 12 H 0.082 0.918 13 C -0.003 4.003 14 C -0.552 4.552 15 H 0.076 0.924 16 C -0.187 4.187 17 N -0.571 5.571 18 Si 0.766 3.234 19 H -0.206 1.206 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.097 4.097 23 C -0.154 4.154 24 C -0.138 4.138 25 C -0.145 4.145 26 C -0.136 4.136 27 C -0.141 4.141 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.240 0.760 41 H 0.010 0.990 42 H 0.024 0.976 43 H 0.069 0.931 44 H 0.130 0.870 45 H 0.162 0.838 46 H 0.170 0.830 47 H 0.168 0.832 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.253 -11.553 12.338 18.393 hybrid contribution 0.232 0.575 -1.372 1.506 sum -7.021 -10.978 10.966 17.031 Atomic orbital electron populations 1.21768 0.95583 1.02143 1.01487 1.21557 0.96090 0.94712 1.03149 1.21433 0.92052 0.98318 1.01845 1.21427 0.97945 0.91392 1.01150 0.86515 1.21459 1.00871 1.00034 0.91773 1.21873 1.01507 0.99531 0.98714 1.21203 0.80827 0.92312 0.75374 1.90626 1.58437 1.47878 1.49279 1.45802 1.17903 1.07926 1.63555 1.19685 0.96503 0.84030 0.90810 0.91840 1.19251 0.93432 0.94842 0.92755 1.21536 0.94872 1.46685 0.92103 0.92437 1.25663 0.95214 0.95502 1.02357 1.70063 1.06006 1.50641 1.30357 0.85890 0.78150 0.78968 0.80423 1.20612 1.20513 1.19148 1.20231 0.98561 0.96018 0.94904 1.21171 1.01232 0.97427 0.95544 1.21387 0.97471 1.00081 0.94872 1.21504 0.98377 0.93589 1.01028 1.21455 0.99416 0.99062 0.93648 1.21077 0.97500 0.98680 0.96869 0.91336 0.93044 0.93493 0.90815 0.90524 0.92972 0.92742 0.91925 0.87532 0.95659 0.92749 0.91851 0.76049 0.99033 0.97557 0.93059 0.86961 0.83826 0.83033 0.83247 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.83 16 2 C -0.12 -2.08 5.69 30.59 0.17 -1.90 16 3 C -0.10 -2.49 3.96 30.59 0.12 -2.37 16 4 C -0.10 -2.62 2.50 -11.54 -0.03 -2.65 16 5 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 6 C -0.10 -2.72 5.51 30.59 0.17 -2.55 16 7 C -0.16 -5.33 9.25 71.98 0.67 -4.66 16 8 C 0.51 19.47 5.41 87.66 0.47 19.94 16 9 O -0.58 -27.44 13.54 -3.01 -0.04 -27.48 16 10 N -0.70 -26.02 4.59 -446.11 -2.05 -28.07 16 11 C 0.19 8.42 2.39 44.24 0.11 8.52 16 12 H 0.06 3.11 6.94 -2.39 -0.02 3.09 16 13 C 0.04 1.86 4.63 29.85 0.14 2.00 16 14 C -0.51 -30.09 8.75 25.60 0.22 -29.86 16 15 H 0.06 3.49 5.81 -2.91 -0.02 3.47 16 16 C 0.01 0.60 5.46 84.65 0.46 1.06 16 17 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 18 Si 0.94 47.12 29.54 68.60 2.03 49.14 16 19 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 22 C -0.10 -3.46 4.95 -19.87 -0.10 -3.56 16 23 C -0.14 -4.48 9.67 22.27 0.22 -4.26 16 24 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 25 C -0.13 -2.86 10.05 22.27 0.22 -2.64 16 26 C -0.12 -2.83 10.05 22.27 0.22 -2.60 16 27 C -0.12 -3.69 9.25 22.27 0.21 -3.48 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.19 6.52 -2.39 -0.02 1.18 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.63 6.16 -2.39 -0.01 1.62 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.11 2.02 6.46 -2.38 -0.02 2.00 16 37 H 0.02 1.08 6.48 -2.39 -0.02 1.07 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.95 6.45 -2.38 -0.02 1.93 16 40 H 0.40 12.37 7.18 -92.70 -0.67 11.71 16 41 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 44 H 0.11 3.76 8.04 -2.91 -0.02 3.74 16 45 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 46 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 47 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 48 H 0.12 3.42 6.80 -2.91 -0.02 3.40 16 Total: -1.00 -74.17 380.48 4.70 -69.47 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.27 Total: 27.58 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.21 Total: -33.75 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.76 Total: -84.97 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.04 Total: -27.48 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -74.17 4.70 -69.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821175843.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.907 kcal (2) G-P(sol) polarization free energy of solvation -74.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds