Wall clock time and date at job start Tue Mar 31 2020 09:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47245 * 2 1 4 4 C 1.52999 * 109.47245 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47507 * 305.00494 * 4 3 2 6 6 C 1.52999 * 109.46898 * 65.00392 * 4 3 2 7 7 C 1.53006 * 109.47002 * 185.50392 * 6 4 3 8 8 C 1.50707 * 109.47068 * 184.99973 * 4 3 2 9 9 O 1.21282 * 120.00109 * 275.48469 * 8 4 3 10 10 N 1.34781 * 119.99505 * 95.48652 * 8 4 3 11 11 C 1.46498 * 119.99490 * 184.96067 * 10 8 4 12 12 H 1.08994 * 109.47565 * 34.99892 * 11 10 8 13 13 C 1.53004 * 109.46918 * 154.99643 * 11 10 8 14 14 C 1.50697 * 109.47485 * 294.99891 * 13 11 10 15 15 H 1.08005 * 119.99385 * 359.97438 * 14 13 11 16 16 C 1.37875 * 120.00264 * 179.97438 * 14 13 11 17 17 N 1.31512 * 120.00154 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99990 * 0.02562 * 16 14 13 19 19 H 1.48490 * 109.47137 * 89.99344 * 18 16 14 20 20 H 1.48501 * 109.46869 * 210.00052 * 18 16 14 21 21 H 1.48502 * 109.46654 * 329.99746 * 18 16 14 22 22 C 1.50694 * 109.47403 * 274.99618 * 11 10 8 23 23 C 1.38238 * 120.00037 * 319.73122 * 22 11 10 24 24 C 1.38235 * 120.00216 * 179.80581 * 23 22 11 25 25 C 1.38230 * 119.99738 * 0.39805 * 24 23 22 26 26 C 1.38236 * 120.00164 * 359.85700 * 25 24 23 27 27 C 1.38227 * 119.99817 * 359.95276 * 26 25 24 28 28 H 1.09000 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46688 * 299.99309 * 1 2 3 30 30 H 1.09000 * 109.47334 * 59.99345 * 1 2 3 31 31 H 1.08993 * 109.47345 * 120.00234 * 2 1 3 32 32 H 1.08998 * 109.46990 * 240.00536 * 2 1 3 33 33 H 1.09000 * 109.47489 * 300.00559 * 3 2 1 34 34 H 1.09002 * 109.47088 * 60.00059 * 3 2 1 35 35 H 1.08998 * 109.46962 * 305.50291 * 6 4 3 36 36 H 1.09003 * 109.47410 * 65.50612 * 6 4 3 37 37 H 1.08995 * 109.47142 * 293.85060 * 7 6 4 38 38 H 1.08996 * 109.46847 * 53.85257 * 7 6 4 39 39 H 1.09001 * 109.46969 * 173.84626 * 7 6 4 40 40 H 0.96997 * 120.00137 * 4.95416 * 10 8 4 41 41 H 1.09001 * 109.47191 * 55.00258 * 13 11 10 42 42 H 1.09002 * 109.47081 * 175.00116 * 13 11 10 43 43 H 0.96996 * 120.00265 * 180.02562 * 17 16 14 44 44 H 1.08004 * 119.99786 * 359.97438 * 23 22 11 45 45 H 1.07999 * 119.99883 * 180.22939 * 24 23 22 46 46 H 1.08007 * 119.99914 * 179.83526 * 25 24 23 47 47 H 1.08000 * 119.99749 * 179.97438 * 26 25 24 48 48 H 1.08010 * 119.99771 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9338 0.8529 0.8408 6 6 4.0794 0.8331 -1.3083 7 6 5.6032 0.7068 -1.2526 8 6 4.0724 2.8579 0.1232 9 8 4.1795 3.5521 -0.8655 10 7 4.4027 3.3523 1.3328 11 6 4.7870 4.7594 1.4688 12 1 4.2081 5.3634 0.7702 13 6 4.5099 5.2277 2.8988 14 6 3.0262 5.1926 3.1604 15 1 2.3486 4.8690 2.3841 16 6 2.5338 5.5735 4.3906 17 7 1.2390 5.5423 4.6190 18 14 3.7058 6.1339 5.7330 19 1 3.9047 7.6022 5.6352 20 1 3.1330 5.7992 7.0615 21 1 5.0114 5.4455 5.5691 22 6 6.2555 4.9107 1.1664 23 6 7.1556 3.9644 1.6195 24 6 8.5022 4.1010 1.3387 25 6 8.9497 5.1882 0.6118 26 6 8.0504 6.1373 0.1632 27 6 6.7033 5.9986 0.4406 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.6377 -0.1539 -1.4455 36 1 3.7985 1.4761 -2.1425 37 1 6.0494 1.7008 -1.2253 38 1 5.8895 0.1552 -0.3571 39 1 5.9562 0.1741 -2.1356 40 1 4.3859 2.7764 2.1131 41 1 5.0185 4.5684 3.6021 42 1 4.8770 6.2463 3.0251 43 1 0.8926 5.8107 5.4843 44 1 6.8063 3.1168 2.1907 45 1 9.2049 3.3597 1.6896 46 1 10.0022 5.2964 0.3947 47 1 8.4002 6.9869 -0.4044 48 1 6.0006 6.7399 0.0897 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821175846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:05 Heat of formation + Delta-G solvation = -66.717108 kcal Electronic energy + Delta-G solvation = -25501.417397 eV Core-core repulsion = 22132.975320 eV Total energy + Delta-G solvation = -3368.442077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28022 -39.93563 -37.43001 -36.61027 -34.68488 -33.88913 -32.65968 -31.71461 -30.98219 -30.01044 -26.95515 -25.33940 -23.73247 -23.59204 -23.21437 -22.14261 -21.24876 -20.67063 -19.06172 -18.19633 -17.73351 -16.98065 -16.41407 -16.21121 -16.04736 -15.83789 -15.47557 -15.23487 -14.73239 -14.68032 -14.45748 -14.19202 -14.10639 -14.01321 -13.82165 -13.63889 -13.54198 -13.04977 -12.93711 -12.60229 -12.56784 -12.42162 -12.23771 -11.98607 -11.93961 -11.75122 -11.74022 -11.68240 -11.66913 -11.43596 -11.28143 -10.80545 -10.56529 -9.97563 -9.76589 -9.53837 -8.28706 -6.33323 0.49393 0.54860 1.35966 1.37304 1.48064 1.76311 2.34589 2.39018 2.95970 3.07041 3.69733 3.82030 3.88889 3.99122 4.01823 4.19564 4.23372 4.30388 4.31027 4.31685 4.42398 4.51608 4.57399 4.58735 4.72161 4.73665 4.75651 4.83947 4.89670 4.96687 5.01119 5.07063 5.13404 5.15078 5.17290 5.25772 5.26929 5.32675 5.36443 5.42048 5.48818 5.54061 5.59191 5.63516 5.64915 5.87818 6.17078 6.25352 6.70740 6.75816 7.30510 7.40756 8.87439 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008308 B = 0.006492 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3369.343454 B = 4312.063174 C = 7080.282360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.107 4.107 4 C -0.097 4.097 5 H 0.109 0.891 6 C -0.103 4.103 7 C -0.149 4.149 8 C 0.514 3.486 9 O -0.588 6.588 10 N -0.699 5.699 11 C 0.205 3.795 12 H 0.050 0.950 13 C -0.004 4.004 14 C -0.519 4.519 15 H 0.032 0.968 16 C 0.013 3.987 17 N -0.946 5.946 18 Si 0.943 3.057 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.243 1.243 22 C -0.097 4.097 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.124 4.124 27 C -0.133 4.133 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.407 0.593 41 H 0.037 0.963 42 H 0.026 0.974 43 H 0.266 0.734 44 H 0.124 0.876 45 H 0.148 0.852 46 H 0.150 0.850 47 H 0.142 0.858 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.206 -11.589 -7.543 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.145 4.145 4 C -0.118 4.118 5 H 0.127 0.873 6 C -0.141 4.141 7 C -0.206 4.206 8 C 0.302 3.698 9 O -0.469 6.469 10 N -0.348 5.348 11 C 0.099 3.901 12 H 0.068 0.932 13 C -0.042 4.042 14 C -0.557 4.557 15 H 0.050 0.950 16 C -0.184 4.184 17 N -0.586 5.586 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.166 1.166 22 C -0.098 4.098 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.152 4.152 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.243 0.757 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.142 0.858 45 H 0.165 0.835 46 H 0.168 0.832 47 H 0.160 0.840 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.126 -11.054 -8.092 18.295 hybrid contribution -0.555 0.808 1.070 1.451 sum 11.571 -10.247 -7.023 16.976 Atomic orbital electron populations 1.21795 0.95875 1.02301 1.01309 1.21531 0.95856 0.94245 1.03418 1.21494 0.92439 0.99220 1.01350 1.21433 0.96973 0.91406 1.02000 0.87262 1.21463 0.96425 1.01397 0.94817 1.21759 0.95344 1.00662 1.02842 1.21245 0.75727 0.90403 0.82388 1.90608 1.55712 1.62353 1.38217 1.45953 1.67702 1.11184 1.09991 1.19520 0.90127 0.82661 0.97772 0.93200 1.19724 0.95439 0.96996 0.91994 1.21171 0.91727 1.44261 0.98502 0.94986 1.25862 0.96461 0.95102 1.00974 1.70054 1.14235 1.49851 1.24462 0.85776 0.80231 0.79251 0.78095 1.19913 1.20965 1.16616 1.20372 0.95458 0.96014 0.97936 1.21079 0.93678 0.98818 1.00148 1.21437 0.95092 0.98842 0.98631 1.21473 1.00674 0.94253 0.98186 1.21370 0.92339 1.00246 1.00186 1.21164 0.97024 0.97899 0.99095 0.90926 0.94011 0.93097 0.90709 0.89875 0.93000 0.93579 0.88230 0.93087 0.95499 0.91295 0.91199 0.75735 0.94495 0.95576 0.92537 0.85800 0.83466 0.83188 0.84047 0.87205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 9.91 71.98 0.71 -2.51 16 2 C -0.11 -2.30 5.70 30.59 0.17 -2.13 16 3 C -0.11 -2.99 4.66 30.59 0.14 -2.85 16 4 C -0.10 -2.62 2.19 -11.54 -0.03 -2.65 16 5 H 0.11 2.41 8.08 -2.39 -0.02 2.39 16 6 C -0.10 -2.42 5.05 30.60 0.15 -2.27 16 7 C -0.15 -3.31 9.63 71.98 0.69 -2.61 16 8 C 0.51 18.87 5.92 87.66 0.52 19.38 16 9 O -0.59 -26.11 15.74 -3.04 -0.05 -26.16 16 10 N -0.70 -25.93 4.04 -446.10 -1.80 -27.74 16 11 C 0.20 8.51 2.08 44.25 0.09 8.61 16 12 H 0.05 2.42 7.52 -2.39 -0.02 2.40 16 13 C 0.00 -0.18 3.56 29.85 0.11 -0.07 16 14 C -0.52 -28.82 9.39 25.60 0.24 -28.58 16 15 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 16 C 0.01 0.76 5.47 84.65 0.46 1.23 16 17 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 18 Si 0.94 42.98 27.47 68.60 1.88 44.86 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 22 C -0.10 -3.49 4.91 -19.87 -0.10 -3.58 16 23 C -0.12 -3.63 9.32 22.27 0.21 -3.42 16 24 C -0.12 -3.03 10.05 22.27 0.22 -2.80 16 25 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 26 C -0.12 -3.34 10.05 22.27 0.22 -3.12 16 27 C -0.13 -4.54 9.67 22.27 0.22 -4.33 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.08 1.38 6.45 -2.39 -0.02 1.36 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 1.72 6.32 -2.39 -0.02 1.71 16 36 H 0.05 1.44 7.66 -2.39 -0.02 1.42 16 37 H 0.03 0.76 7.47 -2.39 -0.02 0.74 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.41 13.55 8.56 -92.71 -0.79 12.75 16 41 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 42 H 0.03 1.20 7.57 -2.39 -0.02 1.18 16 43 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.12 3.46 7.73 -2.91 -0.02 3.44 16 45 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 46 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 47 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 48 H 0.11 3.81 8.04 -2.91 -0.02 3.79 16 Total: -1.00 -71.49 387.78 4.67 -66.82 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.07 Total: 34.39 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 4.27 Total: -34.49 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.50 Total: -85.42 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.05 Total: -26.16 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Total: -71.49 4.67 -66.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821175846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.098 kcal (2) G-P(sol) polarization free energy of solvation -71.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds