Wall clock time and date at job start Tue Mar 31 2020 10:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 H 1.08996 * 109.46952 * 53.60853 * 3 2 1 5 5 N 1.46896 * 109.47265 * 173.60997 * 3 2 1 6 6 C 1.46896 * 111.00223 * 270.59898 * 5 3 2 7 7 C 1.53007 * 109.47600 * 180.28651 * 6 5 3 8 8 C 1.53002 * 109.46863 * 299.99834 * 7 6 5 9 9 C 1.52999 * 109.46796 * 59.99820 * 7 6 5 10 10 C 1.50694 * 109.46976 * 179.97438 * 7 6 5 11 11 H 1.07993 * 120.00634 * 2.37625 * 10 7 6 12 12 C 1.37879 * 119.99576 * 182.38338 * 10 7 6 13 13 N 1.31516 * 119.99890 * 193.02493 * 12 10 7 14 14 Si 1.86803 * 120.00285 * 13.01992 * 12 10 7 15 15 H 1.48502 * 109.46892 * 84.59718 * 14 12 10 16 16 H 1.48496 * 109.47150 * 204.59760 * 14 12 10 17 17 H 1.48500 * 109.46881 * 324.60070 * 14 12 10 18 18 C 1.50696 * 109.47023 * 293.61019 * 3 2 1 19 19 C 1.38293 * 120.11627 * 279.99645 * 18 3 2 20 20 C 1.37928 * 120.35086 * 180.15977 * 19 18 3 21 21 C 1.39286 * 120.23962 * 359.97438 * 20 19 18 22 22 C 1.38876 * 118.87764 * 359.65364 * 21 20 19 23 23 C 1.37746 * 120.78946 * 0.29776 * 22 21 20 24 24 C 1.51646 * 107.04677 * 180.95618 * 22 21 20 25 25 C 1.54712 * 101.94014 * 15.14323 * 24 22 21 26 26 O 1.36140 * 129.90049 * 179.07314 * 21 20 19 27 27 H 1.09002 * 109.47179 * 178.23594 * 1 2 3 28 28 H 1.08997 * 109.47097 * 58.23328 * 1 2 3 29 29 H 1.09002 * 109.46739 * 298.23339 * 1 2 3 30 30 H 1.08997 * 109.47437 * 120.00312 * 2 1 3 31 31 H 1.09002 * 109.47112 * 240.00185 * 2 1 3 32 32 H 1.00904 * 110.99941 * 34.54590 * 5 3 2 33 33 H 1.09001 * 109.46796 * 300.28538 * 6 5 3 34 34 H 1.08998 * 109.47655 * 60.28269 * 6 5 3 35 35 H 1.08993 * 109.46823 * 69.58021 * 8 7 6 36 36 H 1.08996 * 109.46923 * 189.58058 * 8 7 6 37 37 H 1.08999 * 109.46697 * 309.57968 * 8 7 6 38 38 H 1.08994 * 109.47754 * 60.00295 * 9 7 6 39 39 H 1.09003 * 109.46936 * 180.02562 * 9 7 6 40 40 H 1.09006 * 109.46758 * 300.00079 * 9 7 6 41 41 H 0.97006 * 120.00183 * 179.97438 * 13 12 10 42 42 H 1.08002 * 119.82342 * 0.19244 * 19 18 3 43 43 H 1.08006 * 119.87995 * 180.02562 * 20 19 18 44 44 H 1.07996 * 120.01320 * 179.88692 * 23 22 21 45 45 H 1.09003 * 110.93735 * 133.29646 * 24 22 21 46 46 H 1.08995 * 110.93790 * 256.94403 * 24 22 21 47 47 H 1.08991 * 110.75113 * 93.09651 * 25 24 22 48 48 H 1.09007 * 110.74364 * 216.26553 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5863 1.9883 0.8272 5 7 3.5008 1.4454 0.1541 6 6 3.8805 1.4830 1.5727 7 6 5.4058 1.4922 1.6925 8 6 5.9758 0.2283 1.0454 9 6 5.9658 2.7260 0.9818 10 6 5.7952 1.5313 3.1477 11 1 5.0322 1.5093 3.9117 12 6 7.1256 1.5955 3.5039 13 7 7.4844 1.3732 4.7495 14 14 8.4187 1.9980 2.2172 15 1 8.5259 3.4716 2.0674 16 1 9.7299 1.4472 2.6440 17 1 8.0279 1.3955 0.9174 18 6 1.6709 2.1058 -1.3018 19 6 2.4273 1.8760 -2.4366 20 6 2.0959 2.4831 -3.6299 21 6 0.9949 3.3333 -3.7023 22 6 0.2385 3.5500 -2.5580 23 6 0.5706 2.9419 -1.3675 24 6 -0.8908 4.4863 -2.9423 25 6 -0.8572 4.4111 -4.4873 26 8 0.5052 4.0399 -4.7579 27 1 -0.3634 -1.0272 -0.0316 28 1 -0.3633 0.5410 -0.8737 29 1 -0.3633 0.4862 0.9054 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9150 0.6509 -0.3100 33 1 3.4745 2.3834 2.0337 34 1 3.4816 0.6041 2.0791 35 1 5.8427 0.2817 -0.0351 36 1 7.0378 0.1487 1.2772 37 1 5.4527 -0.6459 1.4332 38 1 5.5598 3.6264 1.4427 39 1 7.0524 2.7323 1.0667 40 1 5.6840 2.6980 -0.0709 41 1 8.4204 1.4180 5.0000 42 1 3.2818 1.2173 -2.3882 43 1 2.6917 2.2979 -4.5115 44 1 -0.0253 3.1208 -0.4848 45 1 -1.8441 4.1261 -2.5557 46 1 -0.6907 5.5005 -2.5967 47 1 -1.5451 3.6484 -4.8518 48 1 -1.0906 5.3812 -4.9262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840784551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:00 Heat of formation + Delta-G solvation = -0.316647 kcal Electronic energy + Delta-G solvation = -25327.217700 eV Core-core repulsion = 21961.654963 eV Total energy + Delta-G solvation = -3365.562737 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.15860 -38.74349 -36.94788 -35.09498 -32.77598 -32.24189 -31.01293 -29.97124 -29.22608 -26.19663 -25.99462 -24.98433 -23.50532 -23.34803 -22.45841 -22.00556 -19.97201 -18.79194 -17.45102 -16.68954 -16.35884 -15.98955 -15.82916 -15.32913 -14.88495 -14.21780 -14.17621 -13.89013 -13.62494 -13.30211 -13.19563 -13.03894 -12.79362 -12.66909 -12.54162 -12.27117 -12.17406 -11.95104 -11.84412 -11.78721 -11.66866 -11.23620 -10.93856 -10.88924 -10.69598 -10.60657 -10.27499 -10.04091 -9.93921 -9.84165 -8.93827 -8.86097 -8.53212 -8.36580 -8.03282 -7.83682 -6.06378 -4.02556 1.32370 1.38446 3.16213 3.34749 3.44001 3.47568 3.68897 4.23089 4.35963 4.45896 4.69467 4.72173 4.83276 4.92270 5.03081 5.09199 5.20167 5.23904 5.27076 5.39292 5.45615 5.49987 5.53959 5.64164 5.66715 5.77606 5.96539 5.99141 6.04992 6.09064 6.16870 6.19835 6.32680 6.36073 6.38607 6.53526 6.59456 6.64535 6.68747 6.70232 6.86571 6.95086 7.05064 7.15709 7.37900 7.53300 7.60510 7.80969 7.95506 8.56424 8.97990 9.59689 11.07029 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.003407 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.034546 B = 8217.421077 C = 8825.554685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.127 3.873 4 H 0.082 0.918 5 N -0.682 5.682 6 C 0.086 3.914 7 C 0.041 3.959 8 C -0.143 4.143 9 C -0.135 4.135 10 C -0.512 4.512 11 H 0.071 0.929 12 C 0.072 3.928 13 N -0.899 5.899 14 Si 0.890 3.110 15 H -0.288 1.288 16 H -0.310 1.310 17 H -0.249 1.249 18 C -0.078 4.078 19 C -0.062 4.062 20 C -0.137 4.137 21 C 0.092 3.908 22 C -0.177 4.177 23 C -0.067 4.067 24 C -0.109 4.109 25 C 0.052 3.948 26 O -0.309 6.309 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.337 0.663 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.027 0.973 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.029 0.971 40 H 0.044 0.956 41 H 0.263 0.737 42 H 0.131 0.869 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.533 1.542 -16.773 24.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C 0.017 3.983 4 H 0.101 0.899 5 N -0.313 5.313 6 C -0.042 4.042 7 C 0.040 3.960 8 C -0.201 4.201 9 C -0.191 4.191 10 C -0.550 4.550 11 H 0.089 0.911 12 C -0.129 4.129 13 N -0.536 5.536 14 Si 0.724 3.276 15 H -0.216 1.216 16 H -0.239 1.239 17 H -0.175 1.175 18 C -0.079 4.079 19 C -0.080 4.080 20 C -0.156 4.156 21 C 0.047 3.953 22 C -0.178 4.178 23 C -0.086 4.086 24 C -0.146 4.146 25 C -0.023 4.023 26 O -0.223 6.223 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.106 0.894 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.222 2.279 -16.911 24.244 hybrid contribution 0.472 -0.501 -0.110 0.697 sum -16.751 1.778 -17.022 23.947 Atomic orbital electron populations 1.21736 0.95685 1.01366 1.01827 1.22239 0.96680 0.97466 1.02329 1.20445 0.89883 0.93960 0.94047 0.89948 1.60684 1.06044 1.48600 1.15929 1.21992 0.97555 0.99431 0.85260 1.18461 0.90385 0.91407 0.95757 1.22290 1.01562 0.99115 0.97124 1.22160 0.98265 0.99547 0.99171 1.20874 0.93037 1.51287 0.89775 0.91118 1.24990 0.98489 0.94340 0.95121 1.69960 1.17203 1.48572 1.17878 0.87208 0.79498 0.78266 0.82649 1.21572 1.23889 1.17471 1.19712 0.94635 0.98136 0.95374 1.20666 0.98341 0.98299 0.90706 1.20242 0.97618 0.98498 0.99250 1.19514 0.96091 0.93418 0.86290 1.20630 1.00265 1.02361 0.94525 1.20118 0.96728 0.95748 0.95972 1.21757 0.97901 0.99695 0.95247 1.23773 0.82002 1.01429 0.95108 1.86813 1.27307 1.68224 1.39992 0.93081 0.92511 0.92800 0.91379 0.91814 0.84363 0.91817 0.95840 0.95443 0.92818 0.94226 0.93666 0.95286 0.93716 0.92767 0.85127 0.85814 0.86148 0.89355 0.89343 0.90847 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.70 37.16 0.36 -1.13 16 2 C -0.15 -1.72 5.36 -26.73 -0.14 -1.86 16 3 C 0.13 1.67 2.28 -68.87 -0.16 1.51 16 4 H 0.08 1.12 7.60 -51.93 -0.39 0.73 16 5 N -0.68 -10.62 4.86 -107.96 -0.52 -11.15 16 6 C 0.09 1.63 4.38 -3.82 -0.02 1.61 16 7 C 0.04 0.92 0.57 -155.66 -0.09 0.83 16 8 C -0.14 -3.00 7.24 37.16 0.27 -2.73 16 9 C -0.13 -2.96 7.51 37.16 0.28 -2.69 16 10 C -0.51 -14.01 8.62 -34.44 -0.30 -14.30 16 11 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 12 C 0.07 2.06 5.33 -17.82 -0.10 1.97 16 13 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 14 Si 0.89 22.22 22.77 -169.99 -3.87 18.35 16 15 H -0.29 -7.21 7.10 56.52 0.40 -6.81 16 16 H -0.31 -7.86 7.11 56.52 0.40 -7.46 16 17 H -0.25 -5.74 4.66 56.52 0.26 -5.47 16 18 C -0.08 -0.99 4.28 -104.56 -0.45 -1.43 16 19 C -0.06 -0.78 9.30 -39.67 -0.37 -1.15 16 20 C -0.14 -1.72 10.06 -39.31 -0.40 -2.12 16 21 C 0.09 1.17 7.03 -38.96 -0.27 0.90 16 22 C -0.18 -2.06 6.27 -104.10 -0.65 -2.72 16 23 C -0.07 -0.80 8.71 -39.72 -0.35 -1.14 16 24 C -0.11 -0.91 7.12 -26.52 -0.19 -1.10 16 25 C 0.05 0.42 8.01 38.06 0.30 0.72 16 26 O -0.31 -3.76 11.11 -20.19 -0.22 -3.98 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.57 6.68 -51.93 -0.35 0.22 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.85 7.68 -51.93 -0.40 0.46 16 31 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.34 5.03 6.27 -39.29 -0.25 4.78 16 33 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 34 H 0.02 0.45 7.68 -51.93 -0.40 0.05 16 35 H 0.03 0.49 7.07 -51.93 -0.37 0.13 16 36 H 0.05 1.21 4.36 -51.93 -0.23 0.99 16 37 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.03 0.67 2.18 -51.93 -0.11 0.56 16 40 H 0.04 0.89 7.60 -51.93 -0.39 0.50 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.13 1.56 7.40 -52.49 -0.39 1.17 16 43 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 44 H 0.12 1.25 8.04 -52.49 -0.42 0.83 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -30.76 361.53 -8.69 -39.45 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.03 Total: 3.41 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -2.26 Total: -24.84 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.25 Total: -37.84 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.22 Total: -3.98 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -3.87 Total: 18.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.76 -8.69 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840784551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.137 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds