Wall clock time and date at job start Tue Mar 31 2020 10:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 H 1.08996 * 109.46952 * 53.60853 * 3 2 1 5 5 N 1.46896 * 109.47265 * 173.60997 * 3 2 1 6 6 C 1.46896 * 111.00223 * 270.59898 * 5 3 2 7 7 C 1.53007 * 109.47600 * 180.28651 * 6 5 3 8 8 C 1.53002 * 109.46863 * 299.99834 * 7 6 5 9 9 C 1.52999 * 109.46796 * 59.99820 * 7 6 5 10 10 C 1.50694 * 109.46976 * 179.97438 * 7 6 5 11 11 H 1.07993 * 120.00634 * 2.37625 * 10 7 6 12 12 C 1.37879 * 119.99576 * 182.38338 * 10 7 6 13 13 N 1.31516 * 119.99890 * 193.02493 * 12 10 7 14 14 Si 1.86803 * 120.00285 * 13.01992 * 12 10 7 15 15 H 1.48502 * 109.46892 * 84.59718 * 14 12 10 16 16 H 1.48496 * 109.47150 * 204.59760 * 14 12 10 17 17 H 1.48500 * 109.46881 * 324.60070 * 14 12 10 18 18 C 1.50696 * 109.47023 * 293.61019 * 3 2 1 19 19 C 1.38293 * 120.11627 * 279.99645 * 18 3 2 20 20 C 1.37928 * 120.35086 * 180.15977 * 19 18 3 21 21 C 1.39286 * 120.23962 * 359.97438 * 20 19 18 22 22 C 1.38876 * 118.87764 * 359.65364 * 21 20 19 23 23 C 1.37746 * 120.78946 * 0.29776 * 22 21 20 24 24 C 1.51646 * 107.04677 * 180.95618 * 22 21 20 25 25 C 1.54712 * 101.94014 * 15.14323 * 24 22 21 26 26 O 1.36140 * 129.90049 * 179.07314 * 21 20 19 27 27 H 1.09002 * 109.47179 * 178.23594 * 1 2 3 28 28 H 1.08997 * 109.47097 * 58.23328 * 1 2 3 29 29 H 1.09002 * 109.46739 * 298.23339 * 1 2 3 30 30 H 1.08997 * 109.47437 * 120.00312 * 2 1 3 31 31 H 1.09002 * 109.47112 * 240.00185 * 2 1 3 32 32 H 1.00904 * 110.99941 * 34.54590 * 5 3 2 33 33 H 1.09001 * 109.46796 * 300.28538 * 6 5 3 34 34 H 1.08998 * 109.47655 * 60.28269 * 6 5 3 35 35 H 1.08993 * 109.46823 * 69.58021 * 8 7 6 36 36 H 1.08996 * 109.46923 * 189.58058 * 8 7 6 37 37 H 1.08999 * 109.46697 * 309.57968 * 8 7 6 38 38 H 1.08994 * 109.47754 * 60.00295 * 9 7 6 39 39 H 1.09003 * 109.46936 * 180.02562 * 9 7 6 40 40 H 1.09006 * 109.46758 * 300.00079 * 9 7 6 41 41 H 0.97006 * 120.00183 * 179.97438 * 13 12 10 42 42 H 1.08002 * 119.82342 * 0.19244 * 19 18 3 43 43 H 1.08006 * 119.87995 * 180.02562 * 20 19 18 44 44 H 1.07996 * 120.01320 * 179.88692 * 23 22 21 45 45 H 1.09003 * 110.93735 * 133.29646 * 24 22 21 46 46 H 1.08995 * 110.93790 * 256.94403 * 24 22 21 47 47 H 1.08991 * 110.75113 * 93.09651 * 25 24 22 48 48 H 1.09007 * 110.74364 * 216.26553 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5863 1.9883 0.8272 5 7 3.5008 1.4454 0.1541 6 6 3.8805 1.4830 1.5727 7 6 5.4058 1.4922 1.6925 8 6 5.9758 0.2283 1.0454 9 6 5.9658 2.7260 0.9818 10 6 5.7952 1.5313 3.1477 11 1 5.0322 1.5093 3.9117 12 6 7.1256 1.5955 3.5039 13 7 7.4844 1.3732 4.7495 14 14 8.4187 1.9980 2.2172 15 1 8.5259 3.4716 2.0674 16 1 9.7299 1.4472 2.6440 17 1 8.0279 1.3955 0.9174 18 6 1.6709 2.1058 -1.3018 19 6 2.4273 1.8760 -2.4366 20 6 2.0959 2.4831 -3.6299 21 6 0.9949 3.3333 -3.7023 22 6 0.2385 3.5500 -2.5580 23 6 0.5706 2.9419 -1.3675 24 6 -0.8908 4.4863 -2.9423 25 6 -0.8572 4.4111 -4.4873 26 8 0.5052 4.0399 -4.7579 27 1 -0.3634 -1.0272 -0.0316 28 1 -0.3633 0.5410 -0.8737 29 1 -0.3633 0.4862 0.9054 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9150 0.6509 -0.3100 33 1 3.4745 2.3834 2.0337 34 1 3.4816 0.6041 2.0791 35 1 5.8427 0.2817 -0.0351 36 1 7.0378 0.1487 1.2772 37 1 5.4527 -0.6459 1.4332 38 1 5.5598 3.6264 1.4427 39 1 7.0524 2.7323 1.0667 40 1 5.6840 2.6980 -0.0709 41 1 8.4204 1.4180 5.0000 42 1 3.2818 1.2173 -2.3882 43 1 2.6917 2.2979 -4.5115 44 1 -0.0253 3.1208 -0.4848 45 1 -1.8441 4.1261 -2.5557 46 1 -0.6907 5.5005 -2.5967 47 1 -1.5451 3.6484 -4.8518 48 1 -1.0906 5.3812 -4.9262 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840784551.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:59 Heat of formation + Delta-G solvation = -18.751415 kcal Electronic energy + Delta-G solvation = -25328.017092 eV Core-core repulsion = 21961.654963 eV Total energy + Delta-G solvation = -3366.362129 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.97850 -39.83813 -38.36237 -36.33560 -34.07546 -33.55062 -32.45762 -30.90506 -30.03065 -27.91548 -27.27572 -26.94290 -24.77202 -24.24431 -23.35508 -22.82981 -20.94627 -20.58283 -18.27102 -18.09558 -17.57485 -17.33733 -16.96517 -16.73656 -16.11546 -15.41003 -15.08828 -14.97331 -14.89541 -14.78211 -14.47609 -14.23155 -14.04801 -13.87634 -13.78557 -13.68548 -13.38267 -13.17975 -13.07089 -12.75051 -12.58202 -12.44838 -12.28602 -12.11479 -11.89332 -11.87413 -11.66994 -11.62441 -11.53977 -11.40263 -10.90776 -10.56802 -10.29217 -9.74728 -9.17952 -8.88492 -8.27935 -6.26928 0.42887 0.46440 1.37105 1.39684 1.50645 2.36676 2.40976 2.77786 3.09856 3.30853 3.60188 3.77905 3.94982 4.02981 4.05666 4.19028 4.22371 4.30047 4.41595 4.43794 4.50870 4.57426 4.60496 4.62775 4.70712 4.74719 4.85603 4.90529 4.92917 4.93601 4.97676 5.00265 5.11296 5.12847 5.21114 5.23000 5.24601 5.32040 5.35840 5.46073 5.48805 5.60229 5.69455 5.75531 5.80450 5.89523 6.24563 6.31747 6.37368 6.62716 6.81181 7.38710 8.89308 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.003407 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.034546 B = 8217.421077 C = 8825.554685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.143 4.143 3 C 0.132 3.868 4 H 0.075 0.925 5 N -0.679 5.679 6 C 0.101 3.899 7 C 0.036 3.964 8 C -0.140 4.140 9 C -0.131 4.131 10 C -0.511 4.511 11 H 0.030 0.970 12 C 0.016 3.984 13 N -0.950 5.950 14 Si 0.944 3.056 15 H -0.289 1.289 16 H -0.318 1.318 17 H -0.212 1.212 18 C -0.086 4.086 19 C -0.070 4.070 20 C -0.149 4.149 21 C 0.076 3.924 22 C -0.183 4.183 23 C -0.073 4.073 24 C -0.107 4.107 25 C 0.046 3.954 26 O -0.329 6.329 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.344 0.656 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.020 0.980 40 H 0.070 0.930 41 H 0.262 0.738 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.109 0.891 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.860 1.763 -19.654 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.182 4.182 3 C 0.022 3.978 4 H 0.093 0.907 5 N -0.309 5.309 6 C -0.028 4.028 7 C 0.035 3.965 8 C -0.198 4.198 9 C -0.187 4.187 10 C -0.549 4.549 11 H 0.048 0.952 12 C -0.181 4.181 13 N -0.590 5.590 14 Si 0.775 3.225 15 H -0.217 1.217 16 H -0.248 1.248 17 H -0.136 1.136 18 C -0.087 4.087 19 C -0.088 4.088 20 C -0.167 4.167 21 C 0.031 3.969 22 C -0.184 4.184 23 C -0.091 4.091 24 C -0.144 4.144 25 C -0.028 4.028 26 O -0.244 6.244 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.164 0.836 33 H 0.068 0.932 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.128 0.872 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -18.586 2.497 -19.828 27.291 hybrid contribution 0.734 -0.541 0.810 1.219 sum -17.852 1.956 -19.018 26.157 Atomic orbital electron populations 1.21690 0.94395 1.02053 1.01993 1.22166 0.97801 0.96185 1.02053 1.20412 0.88130 0.95000 0.94290 0.90669 1.60579 1.07986 1.49055 1.13327 1.21623 0.95224 0.98516 0.87400 1.18459 0.92751 0.92690 0.92566 1.22192 1.00222 0.98120 0.99237 1.22097 0.97413 0.98660 1.00559 1.21247 0.92034 1.49602 0.92024 0.95186 1.25789 1.00867 0.94489 0.96914 1.70104 1.17603 1.51024 1.20294 0.86326 0.76304 0.77960 0.81869 1.21666 1.24764 1.13590 1.19663 0.95328 0.98753 0.94925 1.20749 0.98640 0.98644 0.90744 1.20424 0.97970 0.98722 0.99626 1.19770 0.96440 0.93662 0.87023 1.21000 1.00994 1.02411 0.93994 1.20282 0.96702 0.95508 0.96655 1.21859 0.97726 0.99293 0.95482 1.24089 0.80405 1.03168 0.95113 1.86783 1.29342 1.68138 1.40160 0.92152 0.92279 0.92673 0.92520 0.91134 0.83609 0.93192 0.96548 0.91923 0.94442 0.93923 0.94591 0.96185 0.91078 0.92903 0.84585 0.84976 0.84956 0.87246 0.88738 0.89470 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.70 71.98 0.70 -1.91 16 2 C -0.14 -3.07 5.36 30.59 0.16 -2.91 16 3 C 0.13 3.24 2.28 44.17 0.10 3.34 16 4 H 0.08 1.97 7.60 -2.39 -0.02 1.95 16 5 N -0.68 -19.80 4.86 -495.47 -2.41 -22.20 16 6 C 0.10 3.77 4.38 86.31 0.38 4.15 16 7 C 0.04 1.58 0.57 -52.93 -0.03 1.55 16 8 C -0.14 -5.52 7.24 71.98 0.52 -5.00 16 9 C -0.13 -5.46 7.51 71.98 0.54 -4.92 16 10 C -0.51 -28.53 8.62 25.60 0.22 -28.31 16 11 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 12 C 0.02 0.94 5.33 84.65 0.45 1.39 16 13 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 14 Si 0.94 45.58 22.77 68.60 1.56 47.14 16 15 H -0.29 -13.88 7.10 99.48 0.71 -13.17 16 16 H -0.32 -15.66 7.11 99.48 0.71 -14.95 16 17 H -0.21 -8.96 4.66 99.48 0.46 -8.50 16 18 C -0.09 -2.02 4.28 -19.83 -0.08 -2.11 16 19 C -0.07 -1.63 9.30 22.21 0.21 -1.42 16 20 C -0.15 -3.50 10.06 22.45 0.23 -3.28 16 21 C 0.08 1.81 7.03 22.67 0.16 1.97 16 22 C -0.18 -3.89 6.27 -19.53 -0.12 -4.01 16 23 C -0.07 -1.59 8.71 22.18 0.19 -1.40 16 24 C -0.11 -1.49 7.12 30.73 0.22 -1.28 16 25 C 0.05 0.62 8.01 72.57 0.58 1.20 16 26 O -0.33 -7.40 11.11 -95.14 -1.06 -8.46 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.05 6.68 -2.39 -0.02 1.04 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.35 7.68 -2.39 -0.02 1.33 16 31 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 32 H 0.34 9.28 6.27 -89.69 -0.56 8.72 16 33 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 34 H 0.02 0.63 7.68 -2.39 -0.02 0.61 16 35 H 0.06 2.02 7.07 -2.39 -0.02 2.01 16 36 H 0.04 1.58 4.36 -2.39 -0.01 1.57 16 37 H 0.04 1.62 8.12 -2.39 -0.02 1.61 16 38 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.02 0.87 2.18 -2.39 -0.01 0.87 16 40 H 0.07 2.59 7.60 -2.38 -0.02 2.57 16 41 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 42 H 0.14 2.93 7.40 -2.91 -0.02 2.90 16 43 H 0.13 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.13 2.48 8.04 -2.91 -0.02 2.46 16 45 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -67.68 361.53 2.96 -64.73 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.14 Total: 21.44 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 4.42 Total: -42.93 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.11 Total: -81.92 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -1.06 Total: -8.46 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.56 Total: 47.14 kcal Total: -67.68 2.96 -64.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840784551.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.977 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds