Wall clock time and date at job start Tue Mar 31 2020 10:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46632 * 2 1 4 4 H 1.09001 * 109.53594 * 55.09432 * 3 2 1 5 5 C 1.53117 * 109.49960 * 295.00022 * 3 2 1 6 6 C 1.53128 * 109.15981 * 182.40899 * 5 3 2 7 7 C 1.53039 * 109.27652 * 57.65033 * 6 5 3 8 8 H 1.08998 * 109.46220 * 60.84255 * 7 6 5 9 9 C 1.52995 * 109.45762 * 180.80918 * 7 6 5 10 10 N 1.46843 * 109.52338 * 300.82092 * 7 6 5 11 11 C 1.46899 * 110.99816 * 185.83926 * 10 7 6 12 12 C 1.50706 * 109.47207 * 190.00143 * 11 10 7 13 13 C 1.38295 * 119.93050 * 269.73101 * 12 11 10 14 14 C 1.38100 * 120.06671 * 179.72500 * 13 12 11 15 15 C 1.38878 * 119.92957 * 0.52386 * 14 13 12 16 16 O 1.35756 * 120.06764 * 179.72573 * 15 14 13 17 17 C 1.34829 * 116.99943 * 174.48607 * 16 15 14 18 18 H 1.08008 * 119.99775 * 5.06001 * 17 16 15 19 19 C 1.38651 * 120.00191 * 185.05509 * 17 16 15 20 20 N 1.31560 * 119.99755 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00311 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46866 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47411 * 119.99983 * 21 19 17 24 24 H 1.48495 * 109.47433 * 240.00445 * 21 19 17 25 25 C 1.38875 * 119.86206 * 359.74963 * 15 14 13 26 26 C 1.38101 * 119.93118 * 359.97438 * 25 15 14 27 27 C 1.46853 * 111.19881 * 61.74843 * 10 7 6 28 28 H 1.08998 * 109.47344 * 299.99787 * 1 2 3 29 29 H 1.08992 * 109.47280 * 60.00680 * 1 2 3 30 30 H 1.09005 * 109.46603 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47344 * 240.00213 * 2 1 3 32 32 H 1.09002 * 109.47250 * 119.99295 * 2 1 3 33 33 H 1.09006 * 109.52396 * 302.30653 * 5 3 2 34 34 H 1.08995 * 109.53040 * 62.50023 * 5 3 2 35 35 H 1.08998 * 109.50111 * 177.59691 * 6 5 3 36 36 H 1.09001 * 109.49804 * 297.67019 * 6 5 3 37 37 H 1.08996 * 109.47500 * 60.00077 * 9 7 6 38 38 H 1.09004 * 109.47126 * 180.02562 * 9 7 6 39 39 H 1.09007 * 109.47291 * 299.99854 * 9 7 6 40 40 H 1.09003 * 109.47446 * 310.00652 * 11 10 7 41 41 H 1.08998 * 109.46867 * 70.00318 * 11 10 7 42 42 H 1.08006 * 119.96813 * 359.97118 * 13 12 11 43 43 H 1.08001 * 120.03441 * 180.26816 * 14 13 12 44 44 H 0.97003 * 119.99749 * 179.97438 * 20 19 17 45 45 H 1.08007 * 120.03333 * 179.97438 * 25 15 14 46 46 H 1.08001 * 119.96477 * 179.97438 * 26 25 15 47 47 H 1.09000 * 109.46466 * 178.24137 * 27 10 7 48 48 H 1.08994 * 109.46264 * 58.26463 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6072 1.9822 0.8424 5 6 1.6352 2.1278 -1.3081 6 6 2.2004 3.5508 -1.3260 7 6 3.7214 3.4922 -1.1667 8 1 4.1521 2.9312 -1.9960 9 6 4.2886 4.9132 -1.1638 10 7 4.0570 2.8288 0.0996 11 6 5.5033 2.8776 0.3522 12 6 5.8399 1.9853 1.5191 13 6 5.8373 2.4984 2.8033 14 6 6.1397 1.6819 3.8753 15 6 6.4572 0.3469 3.6615 16 8 6.7604 -0.4569 4.7127 17 6 6.9469 -1.7658 4.4485 18 1 6.9341 -2.1178 3.4275 19 6 7.1552 -2.6600 5.4875 20 7 7.1704 -2.2312 6.7312 21 14 7.4144 -4.4733 5.1216 22 1 7.3529 -4.6959 3.6545 23 1 8.7438 -4.8960 5.6305 24 1 6.3530 -5.2695 5.7883 25 6 6.4644 -0.1640 2.3702 26 6 6.1555 0.6563 1.3029 27 6 3.5655 1.4452 0.1208 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8901 33 1 2.0353 1.5663 -2.1524 34 1 0.5481 2.1668 -1.3778 35 1 1.9518 4.0292 -2.2732 36 1 1.7697 4.1237 -0.5048 37 1 3.8577 5.4747 -0.3348 38 1 5.3720 4.8717 -1.0508 39 1 4.0403 5.4055 -2.1041 40 1 6.0386 2.5350 -0.5334 41 1 5.7978 3.9017 0.5811 42 1 5.5947 3.5378 2.9685 43 1 6.1334 2.0821 4.8784 44 1 7.3157 -2.8568 7.4582 45 1 6.7113 -1.2017 2.2007 46 1 6.1614 0.2597 0.2984 47 1 3.8564 0.9707 1.0580 48 1 3.9969 0.8937 -0.7146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852592811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:31 Heat of formation + Delta-G solvation = -20.847083 kcal Electronic energy + Delta-G solvation = -25249.418937 eV Core-core repulsion = 21882.965933 eV Total energy + Delta-G solvation = -3366.453004 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.85868 -38.77801 -36.70463 -35.28158 -33.01026 -32.16260 -30.70595 -30.13650 -29.41916 -27.08795 -25.74643 -24.97665 -22.92118 -22.72276 -21.91394 -20.62119 -20.00919 -19.59914 -17.96544 -16.91674 -15.94264 -15.37515 -15.04187 -14.84456 -14.58494 -14.33944 -14.13583 -13.77401 -13.66702 -13.56291 -13.37083 -13.24857 -12.74077 -12.67484 -12.42186 -12.21579 -12.18315 -11.84611 -11.71067 -11.51904 -11.34380 -11.19967 -11.03749 -10.87790 -10.74064 -10.65166 -10.61818 -10.47227 -10.41939 -10.10208 -9.98360 -9.32179 -8.83142 -8.16458 -8.10515 -7.14417 -6.45095 -4.03801 2.22935 2.29128 3.11677 3.13369 3.18819 3.96196 4.00823 4.61049 4.69809 4.77454 4.82146 4.93571 5.09951 5.16917 5.24071 5.27716 5.30267 5.37414 5.44886 5.48199 5.52012 5.54420 5.64011 5.68081 5.75559 5.80362 5.84925 5.86245 5.90002 5.94950 5.99020 6.01127 6.09370 6.10778 6.20527 6.20945 6.24233 6.43675 6.44539 6.50045 6.72124 6.91324 7.04885 7.24683 7.25977 7.36941 7.41926 7.45865 7.83829 8.00121 9.00763 9.71350 10.73037 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.003608 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.474830 B = 7758.040194 C = 8897.415746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.077 0.923 5 C -0.116 4.116 6 C -0.110 4.110 7 C 0.080 3.920 8 H 0.034 0.966 9 C -0.147 4.147 10 N -0.528 5.528 11 C 0.113 3.887 12 C -0.184 4.184 13 C -0.053 4.053 14 C -0.195 4.195 15 C 0.156 3.844 16 O -0.178 6.178 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.862 5.862 21 Si 0.940 3.060 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.234 4.234 26 C -0.065 4.065 27 C 0.059 3.941 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.028 0.972 41 H 0.076 0.924 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.269 0.731 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.091 0.909 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.222 8.806 -16.041 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.095 0.905 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.028 4.028 8 H 0.052 0.948 9 C -0.205 4.205 10 N -0.253 5.253 11 C -0.013 4.013 12 C -0.185 4.185 13 C -0.072 4.072 14 C -0.214 4.214 15 C 0.102 3.898 16 O -0.082 6.082 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.497 5.497 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.253 4.253 26 C -0.084 4.084 27 C -0.069 4.069 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.079 0.921 45 H 0.143 0.857 46 H 0.119 0.881 47 H 0.110 0.890 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.381 9.010 -15.197 20.003 hybrid contribution 0.590 -1.469 -0.880 1.811 sum -8.791 7.541 -16.076 19.814 Atomic orbital electron populations 1.21786 0.95993 1.01323 1.01657 1.21534 0.95734 0.96392 1.02189 1.21216 0.95411 0.95608 0.98029 0.90456 1.21685 1.00286 0.95798 0.97572 1.21616 0.94553 0.97122 1.01489 1.21616 0.95625 0.95058 0.90525 0.94802 1.21896 1.01040 0.95806 1.01744 1.62065 1.14206 1.16762 1.32217 1.20838 0.86783 0.98872 0.94855 1.19113 1.10895 0.94425 0.94079 1.20460 0.97113 0.98224 0.91364 1.20221 1.09915 0.92159 0.99098 1.19396 0.91616 0.91063 0.87697 1.83983 1.75207 1.19302 1.29673 1.21365 1.50752 0.79994 0.94638 0.89074 1.25281 0.96721 1.00077 0.94430 1.70051 1.45627 1.35451 0.98602 0.85662 0.78316 0.80730 0.78814 1.19130 1.20148 1.20120 1.21113 1.10848 1.01020 0.92350 1.20598 0.97528 0.92943 0.97332 1.22228 0.93923 0.88841 1.01869 0.92729 0.92838 0.93018 0.92361 0.91523 0.92643 0.91901 0.92062 0.91153 0.91752 0.92471 0.92658 0.95332 0.90612 0.87012 0.86591 0.92083 0.85688 0.88090 0.89034 0.95715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 37.16 0.36 -1.08 16 2 C -0.12 -1.34 5.41 -26.73 -0.14 -1.49 16 3 C -0.08 -0.99 2.35 -90.54 -0.21 -1.20 16 4 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 5 C -0.12 -1.16 4.98 -26.60 -0.13 -1.29 16 6 C -0.11 -1.08 5.37 -26.65 -0.14 -1.22 16 7 C 0.08 0.88 2.40 -67.73 -0.16 0.72 16 8 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 9 C -0.15 -1.41 8.78 37.16 0.33 -1.08 16 10 N -0.53 -6.98 4.64 -228.12 -1.06 -8.04 16 11 C 0.11 1.58 4.52 -4.97 -0.02 1.56 16 12 C -0.18 -3.12 4.13 -104.58 -0.43 -3.55 16 13 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 14 C -0.19 -4.13 9.99 -39.40 -0.39 -4.52 16 15 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16 16 O -0.18 -5.10 9.76 0.03 0.00 -5.10 16 17 C -0.39 -10.94 9.49 30.89 0.29 -10.64 16 18 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 21 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.23 -5.05 9.17 -39.40 -0.36 -5.41 16 26 C -0.07 -1.19 7.78 -39.61 -0.31 -1.49 16 27 C 0.06 0.81 3.86 -3.83 -0.01 0.79 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.46 6.62 -51.93 -0.34 0.12 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.57 6.70 -51.93 -0.35 0.22 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.55 6.55 -51.93 -0.34 0.21 16 39 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.03 0.39 8.02 -51.93 -0.42 -0.03 16 41 H 0.08 0.99 6.78 -51.93 -0.35 0.64 16 42 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 43 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 44 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 46 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.09 1.50 5.64 -51.93 -0.29 1.21 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -29.33 370.00 -9.97 -39.30 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -8.14 Total: 4.08 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -2.09 Total: -26.77 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: -0.30 Total: -32.61 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.33 -9.97 -39.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852592811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.457 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds