Wall clock time and date at job start Tue Mar 31 2020 10:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46632 * 2 1 4 4 H 1.09001 * 109.53594 * 55.09432 * 3 2 1 5 5 C 1.53117 * 109.49960 * 295.00022 * 3 2 1 6 6 C 1.53128 * 109.15981 * 182.40899 * 5 3 2 7 7 C 1.53039 * 109.27652 * 57.65033 * 6 5 3 8 8 H 1.08998 * 109.46220 * 60.84255 * 7 6 5 9 9 C 1.52995 * 109.45762 * 180.80918 * 7 6 5 10 10 N 1.46843 * 109.52338 * 300.82092 * 7 6 5 11 11 C 1.46899 * 110.99816 * 185.83926 * 10 7 6 12 12 C 1.50706 * 109.47207 * 190.00143 * 11 10 7 13 13 C 1.38295 * 119.93050 * 269.73101 * 12 11 10 14 14 C 1.38100 * 120.06671 * 179.72500 * 13 12 11 15 15 C 1.38878 * 119.92957 * 0.52386 * 14 13 12 16 16 O 1.35756 * 120.06764 * 179.72573 * 15 14 13 17 17 C 1.34829 * 116.99943 * 174.48607 * 16 15 14 18 18 H 1.08008 * 119.99775 * 5.06001 * 17 16 15 19 19 C 1.38651 * 120.00191 * 185.05509 * 17 16 15 20 20 N 1.31560 * 119.99755 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00311 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46866 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.47411 * 119.99983 * 21 19 17 24 24 H 1.48495 * 109.47433 * 240.00445 * 21 19 17 25 25 C 1.38875 * 119.86206 * 359.74963 * 15 14 13 26 26 C 1.38101 * 119.93118 * 359.97438 * 25 15 14 27 27 C 1.46853 * 111.19881 * 61.74843 * 10 7 6 28 28 H 1.08998 * 109.47344 * 299.99787 * 1 2 3 29 29 H 1.08992 * 109.47280 * 60.00680 * 1 2 3 30 30 H 1.09005 * 109.46603 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47344 * 240.00213 * 2 1 3 32 32 H 1.09002 * 109.47250 * 119.99295 * 2 1 3 33 33 H 1.09006 * 109.52396 * 302.30653 * 5 3 2 34 34 H 1.08995 * 109.53040 * 62.50023 * 5 3 2 35 35 H 1.08998 * 109.50111 * 177.59691 * 6 5 3 36 36 H 1.09001 * 109.49804 * 297.67019 * 6 5 3 37 37 H 1.08996 * 109.47500 * 60.00077 * 9 7 6 38 38 H 1.09004 * 109.47126 * 180.02562 * 9 7 6 39 39 H 1.09007 * 109.47291 * 299.99854 * 9 7 6 40 40 H 1.09003 * 109.47446 * 310.00652 * 11 10 7 41 41 H 1.08998 * 109.46867 * 70.00318 * 11 10 7 42 42 H 1.08006 * 119.96813 * 359.97118 * 13 12 11 43 43 H 1.08001 * 120.03441 * 180.26816 * 14 13 12 44 44 H 0.97003 * 119.99749 * 179.97438 * 20 19 17 45 45 H 1.08007 * 120.03333 * 179.97438 * 25 15 14 46 46 H 1.08001 * 119.96477 * 179.97438 * 26 25 15 47 47 H 1.09000 * 109.46466 * 178.24137 * 27 10 7 48 48 H 1.08994 * 109.46264 * 58.26463 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6072 1.9822 0.8424 5 6 1.6352 2.1278 -1.3081 6 6 2.2004 3.5508 -1.3260 7 6 3.7214 3.4922 -1.1667 8 1 4.1521 2.9312 -1.9960 9 6 4.2886 4.9132 -1.1638 10 7 4.0570 2.8288 0.0996 11 6 5.5033 2.8776 0.3522 12 6 5.8399 1.9853 1.5191 13 6 5.8373 2.4984 2.8033 14 6 6.1397 1.6819 3.8753 15 6 6.4572 0.3469 3.6615 16 8 6.7604 -0.4569 4.7127 17 6 6.9469 -1.7658 4.4485 18 1 6.9341 -2.1178 3.4275 19 6 7.1552 -2.6600 5.4875 20 7 7.1704 -2.2312 6.7312 21 14 7.4144 -4.4733 5.1216 22 1 7.3529 -4.6959 3.6545 23 1 8.7438 -4.8960 5.6305 24 1 6.3530 -5.2695 5.7883 25 6 6.4644 -0.1640 2.3702 26 6 6.1555 0.6563 1.3029 27 6 3.5655 1.4452 0.1208 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8901 33 1 2.0353 1.5663 -2.1524 34 1 0.5481 2.1668 -1.3778 35 1 1.9518 4.0292 -2.2732 36 1 1.7697 4.1237 -0.5048 37 1 3.8577 5.4747 -0.3348 38 1 5.3720 4.8717 -1.0508 39 1 4.0403 5.4055 -2.1041 40 1 6.0386 2.5350 -0.5334 41 1 5.7978 3.9017 0.5811 42 1 5.5947 3.5378 2.9685 43 1 6.1334 2.0821 4.8784 44 1 7.3157 -2.8568 7.4582 45 1 6.7113 -1.2017 2.2007 46 1 6.1614 0.2597 0.2984 47 1 3.8564 0.9707 1.0580 48 1 3.9969 0.8937 -0.7146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852592811.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:30 Heat of formation + Delta-G solvation = -36.778219 kcal Electronic energy + Delta-G solvation = -25250.109763 eV Core-core repulsion = 21882.965933 eV Total energy + Delta-G solvation = -3367.143830 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.13644 -40.27400 -38.32467 -36.29385 -34.45816 -33.78595 -31.84838 -31.48645 -30.82168 -28.09538 -27.46831 -26.33753 -23.96369 -23.78773 -23.48585 -21.95340 -21.12355 -20.54297 -19.83414 -18.80580 -16.91315 -16.65990 -16.46620 -16.27562 -15.88048 -15.63228 -15.47834 -15.29757 -15.05961 -14.68663 -14.55665 -14.33285 -14.27645 -13.91337 -13.68409 -13.54050 -13.18959 -12.98696 -12.91727 -12.76520 -12.54829 -12.38256 -12.28314 -12.13367 -12.08492 -12.02634 -11.86448 -11.68547 -11.44885 -11.18969 -11.03602 -10.90619 -10.78835 -9.76734 -9.22146 -8.84258 -8.47966 -6.16019 0.58747 0.66232 1.33822 1.42035 1.52028 2.16583 2.73218 3.02079 3.27431 3.51912 3.80050 3.87477 3.93395 4.01777 4.04253 4.14238 4.19733 4.33559 4.39591 4.45037 4.46324 4.57197 4.60354 4.65464 4.70554 4.75209 4.80282 4.82921 4.94218 5.01353 5.03680 5.04197 5.08119 5.11075 5.14167 5.14851 5.25485 5.28301 5.29708 5.34299 5.39869 5.53755 5.57414 5.60220 5.70212 5.80617 6.02244 6.18246 6.22251 6.35947 6.96862 7.77926 8.75535 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.003608 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.474830 B = 7758.040194 C = 8897.415746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.080 4.080 4 H 0.063 0.937 5 C -0.111 4.111 6 C -0.107 4.107 7 C 0.078 3.922 8 H 0.035 0.965 9 C -0.144 4.144 10 N -0.534 5.534 11 C 0.115 3.885 12 C -0.156 4.156 13 C -0.048 4.048 14 C -0.205 4.205 15 C 0.116 3.884 16 O -0.233 6.233 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.022 4.022 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.252 1.252 23 H -0.267 1.267 24 H -0.268 1.268 25 C -0.241 4.241 26 C -0.060 4.060 27 C 0.062 3.938 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.094 0.906 42 H 0.145 0.855 43 H 0.112 0.888 44 H 0.273 0.727 45 H 0.116 0.884 46 H 0.128 0.872 47 H 0.058 0.942 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 10.044 -19.705 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.099 4.099 4 H 0.082 0.918 5 C -0.148 4.148 6 C -0.145 4.145 7 C -0.030 4.030 8 H 0.053 0.947 9 C -0.202 4.202 10 N -0.259 5.259 11 C -0.011 4.011 12 C -0.157 4.157 13 C -0.066 4.066 14 C -0.224 4.224 15 C 0.066 3.934 16 O -0.139 6.139 17 C -0.489 4.489 18 H 0.117 0.883 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.837 3.163 22 H -0.176 1.176 23 H -0.192 1.192 24 H -0.193 1.193 25 C -0.260 4.260 26 C -0.079 4.079 27 C -0.066 4.066 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.112 0.888 42 H 0.162 0.838 43 H 0.130 0.870 44 H 0.082 0.918 45 H 0.134 0.866 46 H 0.146 0.854 47 H 0.077 0.923 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.508 10.295 -18.912 23.960 hybrid contribution 0.834 -1.569 0.032 1.777 sum -9.673 8.726 -18.880 22.938 Atomic orbital electron populations 1.21759 0.94598 1.01855 1.02183 1.21521 0.96974 0.95962 1.01348 1.21159 0.93921 0.95947 0.98833 0.91832 1.21654 1.01203 0.95791 0.96199 1.21621 0.93511 0.96924 1.02439 1.21743 0.96612 0.95589 0.89048 0.94719 1.21880 1.00850 0.94752 1.02684 1.62081 1.13272 1.16410 1.34159 1.20878 0.87749 0.98926 0.93591 1.19579 1.06860 0.94257 0.95022 1.20819 0.95689 0.99324 0.90766 1.20457 1.10086 0.91608 1.00232 1.19907 0.93541 0.91912 0.88075 1.83945 1.78246 1.19926 1.31805 1.21839 1.51144 0.80508 0.95409 0.88253 1.26572 0.96140 1.05284 0.93981 1.70193 1.48329 1.37450 0.99888 0.84546 0.78539 0.73831 0.79393 1.17562 1.19240 1.19284 1.21175 1.11205 1.01184 0.92424 1.20859 0.96303 0.93171 0.97527 1.22132 0.95400 0.89046 1.00036 0.93117 0.91343 0.92557 0.91821 0.93757 0.92245 0.90552 0.89879 0.91705 0.92112 0.92508 0.90785 0.94155 0.88815 0.83758 0.86982 0.91835 0.86599 0.85419 0.92329 0.95651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.67 71.98 0.70 -1.87 16 2 C -0.12 -2.55 5.41 30.60 0.17 -2.38 16 3 C -0.08 -1.74 2.35 -10.74 -0.03 -1.77 16 4 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 5 C -0.11 -1.86 4.98 30.68 0.15 -1.71 16 6 C -0.11 -1.70 5.37 30.65 0.16 -1.54 16 7 C 0.08 1.42 2.40 44.94 0.11 1.53 16 8 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 9 C -0.14 -2.17 8.78 71.98 0.63 -1.54 16 10 N -0.53 -12.56 4.64 -875.65 -4.06 -16.62 16 11 C 0.12 2.81 4.52 85.56 0.39 3.20 16 12 C -0.16 -4.99 4.13 -19.84 -0.08 -5.07 16 13 C -0.05 -1.65 9.69 22.25 0.22 -1.43 16 14 C -0.20 -8.93 9.99 22.39 0.22 -8.71 16 15 C 0.12 5.89 6.65 22.58 0.15 6.04 16 16 O -0.23 -14.25 9.76 -22.80 -0.22 -14.47 16 17 C -0.41 -24.41 9.49 67.92 0.64 -23.76 16 18 H 0.10 5.42 5.20 -2.91 -0.02 5.41 16 19 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 20 N -0.92 -57.10 13.67 21.61 0.30 -56.80 16 21 Si 1.02 43.36 29.55 68.60 2.03 45.39 16 22 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 C -0.24 -10.68 9.17 22.39 0.21 -10.48 16 26 C -0.06 -2.12 7.78 22.25 0.17 -1.95 16 27 C 0.06 1.58 3.86 86.32 0.33 1.92 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.99 6.62 -2.39 -0.02 0.98 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.08 1.10 6.70 -2.39 -0.02 1.09 16 35 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.86 6.55 -2.38 -0.02 0.85 16 39 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.04 0.93 8.02 -2.39 -0.02 0.91 16 41 H 0.09 2.04 6.78 -2.39 -0.02 2.02 16 42 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 43 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 45 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 46 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 47 H 0.06 1.88 5.64 -2.39 -0.01 1.87 16 48 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -68.52 370.00 3.57 -64.95 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.92 Total: 27.89 kcal Atomic # 6 Polarization: -54.95 SS G_CDS: 4.61 Total: -50.34 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -3.76 Total: -73.42 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.22 Total: -14.47 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -68.52 3.57 -64.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852592811.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.174 kcal (2) G-P(sol) polarization free energy of solvation -68.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds