Wall clock time and date at job start Tue Mar 31 2020 10:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46924 * 2 1 4 4 C 1.52992 * 109.47376 * 239.99579 * 2 1 3 5 5 O 1.42899 * 109.46889 * 119.99464 * 2 1 3 6 6 C 1.35899 * 117.00338 * 64.92165 * 5 2 1 7 7 C 1.38759 * 120.05177 * 354.28095 * 6 5 2 8 8 C 1.38121 * 119.94044 * 180.02562 * 7 6 5 9 9 C 1.38283 * 120.05827 * 359.72714 * 8 7 6 10 10 C 1.38244 * 120.11043 * 0.54948 * 9 8 7 11 11 C 1.50703 * 119.97205 * 179.72519 * 10 9 8 12 12 N 1.46897 * 109.46992 * 274.68561 * 11 10 9 13 13 C 1.46904 * 110.99734 * 184.45493 * 12 11 10 14 14 C 1.52998 * 109.46926 * 185.42991 * 13 12 11 15 15 C 1.50698 * 115.55215 * 297.30042 * 14 13 12 16 16 H 1.07997 * 120.00204 * 274.87098 * 15 14 13 17 17 C 1.37881 * 119.99842 * 94.58810 * 15 14 13 18 18 N 1.31511 * 120.00006 * 182.82796 * 17 15 14 19 19 Si 1.86800 * 119.99792 * 2.82921 * 17 15 14 20 20 H 1.48505 * 109.46760 * 95.62182 * 19 17 15 21 21 H 1.48499 * 109.47031 * 215.61979 * 19 17 15 22 22 H 1.48491 * 109.47185 * 335.62485 * 19 17 15 23 23 C 1.53000 * 117.49732 * 82.97639 * 14 13 12 24 24 C 1.53006 * 117.49872 * 151.63517 * 14 13 12 25 25 C 1.38157 * 120.05573 * 359.44617 * 10 9 8 26 26 H 1.09001 * 109.47609 * 318.36503 * 1 2 3 27 27 H 1.08993 * 109.47482 * 78.36541 * 1 2 3 28 28 H 1.09004 * 109.47360 * 198.36672 * 1 2 3 29 29 H 1.08998 * 109.47435 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47198 * 299.99544 * 3 2 1 31 31 H 1.08997 * 109.47718 * 59.99574 * 3 2 1 32 32 H 1.09001 * 109.47124 * 291.06932 * 4 2 1 33 33 H 1.09003 * 109.47239 * 51.06703 * 4 2 1 34 34 H 1.08999 * 109.47052 * 171.06682 * 4 2 1 35 35 H 1.07998 * 120.02483 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.96952 * 180.02562 * 8 7 6 37 37 H 1.08005 * 119.94819 * 180.29098 * 9 8 7 38 38 H 1.09001 * 109.46869 * 154.67982 * 11 10 9 39 39 H 1.09005 * 109.46799 * 34.68826 * 11 10 9 40 40 H 1.00903 * 110.99569 * 308.40214 * 12 11 10 41 41 H 1.09004 * 109.47114 * 65.42870 * 13 12 11 42 42 H 1.09002 * 109.47205 * 305.42692 * 13 12 11 43 43 H 0.97004 * 119.99925 * 180.02562 * 18 17 15 44 44 H 1.09007 * 117.49443 * 215.00157 * 23 14 13 45 45 H 1.08999 * 117.49869 * 0.02562 * 23 14 13 46 46 H 1.08999 * 117.49851 * 359.97200 * 24 14 13 47 47 H 1.08997 * 117.50235 * 144.97398 * 24 14 13 48 48 H 1.08000 * 120.03079 * 180.25272 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6735 1.1668 6 6 1.7280 -1.9997 1.2706 7 6 0.9118 -2.6140 0.3315 8 6 0.6301 -3.9619 0.4395 9 6 1.1653 -4.7002 1.4790 10 6 1.9741 -4.0893 2.4191 11 6 2.5507 -4.8957 3.5542 12 7 1.5764 -4.9626 4.6516 13 6 2.1439 -5.6518 5.8181 14 6 1.0619 -5.8218 6.8864 15 6 0.4974 -4.5428 7.4491 16 1 0.9981 -4.0451 8.2664 17 6 -0.6550 -4.0048 6.9166 18 7 -1.1170 -2.8601 7.3701 19 14 -1.5602 -4.9021 5.5509 20 1 -2.6514 -5.7221 6.1359 21 1 -2.1369 -3.9124 4.6058 22 1 -0.6120 -5.7851 4.8255 23 6 0.1108 -7.0119 6.7454 24 6 1.1865 -7.0162 7.8345 25 6 2.2590 -2.7414 2.3156 26 1 -0.3634 0.7680 0.6827 27 1 -0.3634 0.2072 -1.0065 28 1 -0.3634 -0.9753 0.3238 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.8128 -1.7846 -1.1729 33 1 1.5523 -0.3080 -2.1320 34 1 3.1183 -0.5851 -1.3324 35 1 0.4966 -2.0385 -0.4826 36 1 -0.0047 -4.4406 -0.2914 37 1 0.9477 -5.7551 1.5590 38 1 3.4656 -4.4211 3.9090 39 1 2.7757 -5.9038 3.2061 40 1 1.2480 -4.0414 4.9002 41 1 2.9659 -5.0621 6.2241 42 1 2.5140 -6.6318 5.5167 43 1 -1.9280 -2.4819 6.9958 44 1 -0.9232 -6.8698 7.0596 45 1 0.2563 -7.6741 5.8919 46 1 2.0392 -7.6811 7.6968 47 1 0.8606 -6.8768 8.8652 48 1 2.8943 -2.2654 3.0479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865550615.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:33 Heat of formation + Delta-G solvation = 32.500507 kcal Electronic energy + Delta-G solvation = -25303.577169 eV Core-core repulsion = 21939.437491 eV Total energy + Delta-G solvation = -3364.139679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79707 -38.23609 -37.18590 -34.55258 -34.18216 -31.97163 -31.06695 -29.86685 -27.81698 -27.64834 -26.33872 -25.18590 -23.34993 -22.52170 -21.77424 -21.42513 -19.84143 -18.77769 -17.18831 -16.66497 -16.18089 -15.85411 -15.39800 -14.92529 -14.80531 -14.48432 -14.18697 -13.87478 -13.76786 -13.67913 -13.54772 -13.03740 -12.62134 -12.46633 -12.38529 -12.19603 -12.10097 -12.01211 -11.77479 -11.65639 -11.42438 -11.36923 -10.97262 -10.73396 -10.68776 -10.50152 -10.40836 -10.19810 -9.88372 -9.30735 -8.91963 -8.70922 -8.48623 -8.36582 -7.96464 -7.43631 -5.99575 -4.06061 1.43844 1.63563 3.15666 3.49099 3.62429 3.86852 3.90094 4.49110 4.55369 4.66300 4.69517 4.80070 4.92289 4.97016 5.15169 5.26413 5.26663 5.29380 5.31889 5.41368 5.43234 5.51233 5.53574 5.55524 5.67377 5.70719 5.79893 5.82238 5.92902 5.96825 5.98686 6.02268 6.18314 6.21250 6.27729 6.44418 6.45375 6.54452 6.57015 6.59870 6.83075 6.84947 6.93340 7.15414 7.21536 7.55643 7.81023 7.88487 8.15668 8.58661 9.00453 9.64161 11.10311 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.003923 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.287913 B = 7135.663868 C = 7587.245832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.109 3.891 3 C -0.137 4.137 4 C -0.205 4.205 5 O -0.307 6.307 6 C 0.132 3.868 7 C -0.227 4.227 8 C -0.090 4.090 9 C -0.134 4.134 10 C -0.037 4.037 11 C 0.094 3.906 12 N -0.672 5.672 13 C 0.101 3.899 14 C 0.009 3.991 15 C -0.497 4.497 16 H 0.072 0.928 17 C 0.080 3.920 18 N -0.901 5.901 19 Si 0.865 3.135 20 H -0.297 1.297 21 H -0.305 1.305 22 H -0.203 1.203 23 C -0.190 4.190 24 C -0.188 4.188 25 C -0.146 4.146 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.355 0.645 41 H 0.025 0.975 42 H 0.048 0.952 43 H 0.263 0.737 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.084 0.916 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.348 2.325 -18.837 20.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.261 4.261 5 O -0.221 6.221 6 C 0.087 3.913 7 C -0.245 4.245 8 C -0.108 4.108 9 C -0.153 4.153 10 C -0.038 4.038 11 C -0.035 4.035 12 N -0.305 5.305 13 C -0.028 4.028 14 C 0.008 3.992 15 C -0.534 4.534 16 H 0.090 0.910 17 C -0.122 4.122 18 N -0.538 5.538 19 Si 0.693 3.307 20 H -0.225 1.225 21 H -0.233 1.233 22 H -0.124 1.124 23 C -0.227 4.227 24 C -0.226 4.226 25 C -0.165 4.165 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.163 0.837 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.176 0.824 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.102 0.898 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.034 2.040 -18.965 20.006 hybrid contribution -0.351 0.400 -0.398 0.664 sum 5.684 2.439 -19.363 20.327 Atomic orbital electron populations 1.22837 0.94929 1.04744 1.02975 1.21732 0.93892 0.93004 0.84239 1.21799 1.02066 0.92659 1.02930 1.22989 1.02431 1.03526 0.97195 1.86153 1.74409 1.19113 1.42469 1.18812 0.94684 0.82869 0.94948 1.21754 1.04007 0.96641 1.02120 1.20935 0.98517 0.93446 0.97914 1.20938 0.98902 1.00464 0.95018 1.19683 0.95997 0.92684 0.95403 1.20927 0.93546 0.98464 0.90551 1.60717 1.35605 1.26327 1.07841 1.21520 0.95458 0.96136 0.89656 1.19360 0.95671 0.89704 0.94501 1.20280 1.09459 1.05120 1.18582 0.90961 1.25021 0.96641 0.94323 0.96257 1.69927 1.22595 1.18438 1.42827 0.87115 0.80161 0.80678 0.82777 1.22522 1.23253 1.12444 1.22824 0.95730 1.04318 0.99802 1.22919 1.00054 1.03598 0.96023 1.20362 1.04185 0.93206 0.98776 0.91378 0.91200 0.89882 0.91602 0.90625 0.91360 0.89221 0.91179 0.91668 0.83723 0.86120 0.85849 0.94859 0.90644 0.82434 0.95661 0.93399 0.92800 0.90177 0.90723 0.91272 0.89786 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 8.14 37.16 0.30 -1.72 16 2 C 0.11 1.17 1.11 -90.63 -0.10 1.07 16 3 C -0.14 -1.21 8.75 37.16 0.33 -0.88 16 4 C -0.20 -1.85 8.03 37.15 0.30 -1.55 16 5 O -0.31 -4.42 9.79 -19.42 -0.19 -4.61 16 6 C 0.13 1.99 6.07 -39.21 -0.24 1.75 16 7 C -0.23 -3.00 5.77 -39.43 -0.23 -3.23 16 8 C -0.09 -1.20 10.04 -39.61 -0.40 -1.59 16 9 C -0.13 -2.00 9.72 -39.56 -0.38 -2.39 16 10 C -0.04 -0.59 5.34 -104.65 -0.56 -1.15 16 11 C 0.09 1.52 5.82 -4.98 -0.03 1.49 16 12 N -0.67 -13.39 4.17 -115.05 -0.48 -13.87 16 13 C 0.10 2.04 5.55 -3.82 -0.02 2.02 16 14 C 0.01 0.20 1.36 -155.66 -0.21 -0.01 16 15 C -0.50 -13.87 8.97 -34.44 -0.31 -14.17 16 16 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 17 C 0.08 2.32 5.15 -17.82 -0.09 2.22 16 18 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 19 Si 0.86 22.11 23.04 -169.99 -3.92 18.20 16 20 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 21 H -0.30 -8.10 7.11 56.52 0.40 -7.70 16 22 H -0.20 -4.81 4.89 56.52 0.28 -4.54 16 23 C -0.19 -4.15 6.92 -26.69 -0.18 -4.33 16 24 C -0.19 -3.89 9.94 -26.69 -0.27 -4.15 16 25 C -0.15 -2.35 9.62 -39.44 -0.38 -2.73 16 26 H 0.07 0.71 8.00 -51.93 -0.42 0.29 16 27 H 0.07 0.54 7.87 -51.93 -0.41 0.14 16 28 H 0.08 0.97 4.91 -51.93 -0.25 0.72 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.09 0.88 4.30 -51.93 -0.22 0.66 16 33 H 0.07 0.49 7.95 -51.93 -0.41 0.08 16 34 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.15 1.58 3.58 -52.49 -0.19 1.39 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 38 H 0.03 0.51 8.04 -51.93 -0.42 0.09 16 39 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 40 H 0.35 7.99 7.04 -39.29 -0.28 7.71 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 44 H 0.08 1.88 6.14 -51.93 -0.32 1.56 16 45 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 48 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 366.06 15.07 5.52 5.52 Total: -1.00 -31.27 366.06 -8.86 -40.14 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -8.09 Total: 11.04 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -2.47 Total: -29.36 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.29 Total: -40.92 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.19 Total: -4.61 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -3.92 Total: 18.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.27 -8.86 -40.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865550615.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.636 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds