Wall clock time and date at job start Tue Mar 31 2020 11:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47190 * 2 1 4 4 H 1.08994 * 109.47017 * 305.32863 * 3 2 1 5 5 C 1.52992 * 109.46960 * 185.32625 * 3 2 1 6 6 C 1.50699 * 109.47217 * 65.00253 * 5 3 2 7 7 C 1.38259 * 120.00188 * 90.00037 * 6 5 3 8 8 C 1.38206 * 120.00167 * 179.97438 * 7 6 5 9 9 C 1.38254 * 120.00191 * 359.97438 * 8 7 6 10 10 C 1.38210 * 119.99914 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99933 * 179.97438 * 10 9 8 12 12 C 1.38216 * 119.99938 * 269.72488 * 6 5 3 13 13 C 1.50696 * 109.46692 * 65.32929 * 3 2 1 14 14 O 1.21282 * 120.00311 * 34.89182 * 13 3 2 15 15 N 1.34779 * 119.99611 * 214.89404 * 13 3 2 16 16 C 1.46499 * 120.00080 * 354.93153 * 15 13 3 17 17 C 1.53000 * 109.47066 * 94.84286 * 16 15 13 18 18 C 1.46507 * 119.99721 * 174.93042 * 15 13 3 19 19 C 1.50693 * 109.47107 * 90.00120 * 18 15 13 20 20 H 1.08000 * 120.00058 * 0.02562 * 19 18 15 21 21 C 1.37874 * 120.00167 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00262 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99896 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46853 * 90.00122 * 23 21 19 25 25 H 1.48499 * 109.47277 * 209.99935 * 23 21 19 26 26 H 1.48497 * 109.46927 * 330.00270 * 23 21 19 27 27 H 1.09001 * 109.47085 * 54.97247 * 1 2 3 28 28 H 1.08998 * 109.47061 * 294.97100 * 1 2 3 29 29 H 1.09003 * 109.47306 * 174.96995 * 1 2 3 30 30 H 1.08993 * 109.47115 * 120.00466 * 2 1 3 31 31 H 1.09000 * 109.46815 * 240.00128 * 2 1 3 32 32 H 1.09005 * 109.47356 * 185.00151 * 5 3 2 33 33 H 1.09004 * 109.47784 * 305.00020 * 5 3 2 34 34 H 1.08000 * 119.99830 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.99985 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.00282 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47388 * 90.00245 * 11 10 9 38 38 H 1.09003 * 109.46607 * 210.00296 * 11 10 9 39 39 H 1.08998 * 109.47121 * 329.99528 * 11 10 9 40 40 H 1.07993 * 120.00124 * 359.97438 * 12 6 5 41 41 H 1.09006 * 109.46686 * 214.84101 * 16 15 13 42 42 H 1.08994 * 109.46993 * 334.84174 * 16 15 13 43 43 H 1.09005 * 109.47063 * 185.01068 * 17 16 15 44 44 H 1.08999 * 109.47114 * 305.00982 * 17 16 15 45 45 H 1.09004 * 109.47208 * 65.01266 * 17 16 15 46 46 H 1.09002 * 109.47041 * 210.00155 * 18 15 13 47 47 H 1.09004 * 109.47349 * 329.99810 * 18 15 13 48 48 H 0.96999 * 119.99896 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 -0.8384 5 6 3.5641 1.4445 -0.1339 6 6 3.9509 0.8849 -1.4786 7 6 4.0857 1.7285 -2.5657 8 6 4.4410 1.2154 -3.7988 9 6 4.6623 -0.1415 -3.9452 10 6 4.5276 -0.9848 -2.8585 11 6 4.7682 -2.4639 -3.0183 12 6 4.1767 -0.4709 -1.6239 13 6 1.6483 2.1137 1.2911 14 8 1.6216 1.4760 2.3224 15 7 1.3275 3.4227 1.2998 16 6 1.4662 4.2190 0.0779 17 6 0.1241 4.2661 -0.6552 18 6 0.8401 4.0493 2.5311 19 6 2.0077 4.5888 3.3164 20 1 3.0123 4.4767 2.9361 21 6 1.7934 5.2266 4.5198 22 7 2.8124 5.6971 5.2053 23 14 0.0556 5.4226 5.1766 24 1 -0.2899 4.2501 6.0200 25 1 -0.0287 6.6609 5.9919 26 1 -0.8958 5.5124 4.0400 27 1 -0.3633 0.5899 -0.8415 28 1 -0.3633 0.4338 0.9316 29 1 -0.3634 -1.0237 -0.0901 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9353 2.4655 -0.0448 33 1 3.9990 0.8298 0.6542 34 1 3.9132 2.7885 -2.4512 35 1 4.5467 1.8745 -4.6479 36 1 4.9404 -0.5424 -4.9087 37 1 5.8187 -2.6838 -2.8276 38 1 4.1478 -3.0116 -2.3089 39 1 4.5121 -2.7661 -4.0337 40 1 4.0762 -1.1292 -0.7737 41 1 1.7742 5.2319 0.3374 42 1 2.2174 3.7650 -0.5683 43 1 0.2480 4.7823 -1.6072 44 1 -0.2271 3.2501 -0.8358 45 1 -0.6048 4.7994 -0.0449 46 1 0.1629 4.8656 2.2800 47 1 0.3102 3.3090 3.1305 48 1 2.6616 6.1461 6.0518 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874148436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:38 Heat of formation + Delta-G solvation = -35.830886 kcal Electronic energy + Delta-G solvation = -25522.073290 eV Core-core repulsion = 22154.970540 eV Total energy + Delta-G solvation = -3367.102750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.06712 -39.07185 -35.65476 -35.13270 -32.98283 -32.62421 -31.67765 -30.29663 -29.22833 -27.56889 -26.99048 -24.59696 -23.03524 -22.94053 -22.01035 -21.24499 -20.05290 -18.12176 -16.96012 -16.86405 -16.41054 -15.55113 -15.39744 -15.08556 -14.53613 -14.08388 -14.06095 -13.89017 -13.55375 -13.42178 -13.23920 -13.13691 -12.95270 -12.62175 -12.39500 -12.38396 -12.19356 -12.01577 -11.79396 -11.67342 -11.47036 -11.12249 -11.02567 -10.99115 -10.82636 -10.75857 -10.61866 -10.54390 -10.40822 -10.13269 -9.51075 -8.90521 -8.80454 -8.58240 -8.56547 -7.67371 -6.06289 -4.04362 1.28244 1.32698 3.30076 3.35777 3.36109 3.37852 3.70183 3.87396 4.41390 4.66076 4.68698 4.78811 4.94812 5.02064 5.10510 5.21533 5.22972 5.26703 5.28987 5.38373 5.41629 5.45307 5.50224 5.58338 5.61068 5.66294 5.71383 5.76409 5.79149 5.93552 5.97837 5.99299 6.09566 6.13931 6.18801 6.23860 6.39943 6.40304 6.42487 6.49229 6.50908 6.63789 6.75482 6.96056 6.97268 7.40141 7.64434 8.31578 8.50158 8.96584 9.05332 9.54454 11.07224 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.003593 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.255373 B = 7791.000770 C = 7890.433971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.101 4.101 4 H 0.088 0.912 5 C -0.073 4.073 6 C -0.065 4.065 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.129 4.129 10 C -0.088 4.088 11 C -0.114 4.114 12 C -0.114 4.114 13 C 0.514 3.486 14 O -0.537 6.537 15 N -0.593 5.593 16 C 0.105 3.895 17 C -0.170 4.170 18 C 0.217 3.783 19 C -0.525 4.525 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.898 5.898 23 Si 0.875 3.125 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.266 1.266 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.028 0.972 47 H 0.033 0.967 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.083 -10.776 -20.425 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C -0.123 4.123 4 H 0.106 0.894 5 C -0.111 4.111 6 C -0.065 4.065 7 C -0.140 4.140 8 C -0.133 4.133 9 C -0.148 4.148 10 C -0.088 4.088 11 C -0.171 4.171 12 C -0.132 4.132 13 C 0.301 3.699 14 O -0.414 6.414 15 N -0.324 5.324 16 C -0.019 4.019 17 C -0.229 4.229 18 C 0.096 3.904 19 C -0.563 4.563 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.702 3.298 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.191 1.191 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.140 0.860 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.051 0.949 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.101 -10.995 -19.680 22.543 hybrid contribution -0.797 0.415 0.419 0.991 sum -0.696 -10.581 -19.261 21.987 Atomic orbital electron populations 1.21776 0.95944 1.01247 1.01953 1.21489 0.95968 0.94663 1.02625 1.21401 0.95969 0.97835 0.97070 0.89417 1.20549 0.94163 1.02367 0.94025 1.19857 0.97838 0.93520 0.95267 1.21074 1.00636 0.99771 0.92526 1.21090 0.99664 0.95252 0.97319 1.20969 1.01956 0.93590 0.98240 1.19896 0.99385 0.95961 0.93539 1.20787 1.02081 0.91807 1.02406 1.20993 1.00403 0.94855 0.96984 1.20270 0.77613 0.82086 0.89961 1.90658 1.52468 1.64111 1.34128 1.47955 1.64567 1.08368 1.11547 1.21459 0.96596 0.97541 0.86292 1.22244 0.98714 1.01816 1.00105 1.19613 0.95652 0.92902 0.82209 1.21327 0.94098 1.36167 1.04738 0.90782 1.24860 0.96839 0.95045 0.96321 1.69901 1.30264 1.38771 1.14771 0.86866 0.85381 0.77927 0.79602 1.19958 1.21108 1.19114 0.93217 0.92282 0.92898 0.90728 0.91310 0.90238 0.89980 0.86015 0.86243 0.86506 0.91288 0.91514 0.91743 0.85950 0.89935 0.91247 0.92093 0.92827 0.92248 0.95392 0.94875 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.65 37.16 0.36 -1.67 16 2 C -0.11 -1.51 4.90 -26.73 -0.13 -1.64 16 3 C -0.10 -1.50 1.35 -91.78 -0.12 -1.63 16 4 H 0.09 1.17 5.84 -51.93 -0.30 0.86 16 5 C -0.07 -1.02 4.64 -27.89 -0.13 -1.15 16 6 C -0.06 -0.78 4.71 -104.62 -0.49 -1.27 16 7 C -0.12 -1.34 9.70 -39.59 -0.38 -1.72 16 8 C -0.12 -1.13 10.05 -39.59 -0.40 -1.52 16 9 C -0.13 -1.24 9.70 -39.59 -0.38 -1.62 16 10 C -0.09 -0.88 5.88 -104.62 -0.62 -1.50 16 11 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 12 C -0.11 -1.29 7.54 -39.58 -0.30 -1.58 16 13 C 0.51 10.36 5.80 -10.99 -0.06 10.29 16 14 O -0.54 -13.17 15.60 5.56 0.09 -13.09 16 15 N -0.59 -12.13 2.46 -175.06 -0.43 -12.56 16 16 C 0.11 1.65 5.70 -4.04 -0.02 1.62 16 17 C -0.17 -2.20 10.04 37.16 0.37 -1.83 16 18 C 0.22 5.33 4.21 -5.19 -0.02 5.31 16 19 C -0.52 -15.16 9.94 -34.44 -0.34 -15.50 16 20 H 0.07 2.35 8.06 -52.49 -0.42 1.92 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 23 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 24 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.94 7.40 -51.93 -0.38 0.56 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.14 7.67 -51.93 -0.40 0.74 16 31 H 0.07 0.82 5.92 -51.93 -0.31 0.52 16 32 H 0.08 1.15 7.56 -51.93 -0.39 0.75 16 33 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 34 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 40 H 0.12 1.30 8.00 -52.49 -0.42 0.88 16 41 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 42 H 0.07 0.92 5.73 -51.93 -0.30 0.63 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.68 7.63 -51.93 -0.40 0.28 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 47 H 0.03 0.87 6.93 -51.93 -0.36 0.51 16 48 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -33.74 382.94 -9.16 -42.90 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.28 Total: 0.93 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.41 Total: -13.93 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.34 Total: -39.69 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.74 -9.16 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874148436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.068 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds