Wall clock time and date at job start Tue Mar 31 2020 11:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47190 * 2 1 4 4 H 1.08994 * 109.47017 * 305.32863 * 3 2 1 5 5 C 1.52992 * 109.46960 * 185.32625 * 3 2 1 6 6 C 1.50699 * 109.47217 * 65.00253 * 5 3 2 7 7 C 1.38259 * 120.00188 * 90.00037 * 6 5 3 8 8 C 1.38206 * 120.00167 * 179.97438 * 7 6 5 9 9 C 1.38254 * 120.00191 * 359.97438 * 8 7 6 10 10 C 1.38210 * 119.99914 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99933 * 179.97438 * 10 9 8 12 12 C 1.38216 * 119.99938 * 269.72488 * 6 5 3 13 13 C 1.50696 * 109.46692 * 65.32929 * 3 2 1 14 14 O 1.21282 * 120.00311 * 34.89182 * 13 3 2 15 15 N 1.34779 * 119.99611 * 214.89404 * 13 3 2 16 16 C 1.46499 * 120.00080 * 354.93153 * 15 13 3 17 17 C 1.53000 * 109.47066 * 94.84286 * 16 15 13 18 18 C 1.46507 * 119.99721 * 174.93042 * 15 13 3 19 19 C 1.50693 * 109.47107 * 90.00120 * 18 15 13 20 20 H 1.08000 * 120.00058 * 0.02562 * 19 18 15 21 21 C 1.37874 * 120.00167 * 179.97438 * 19 18 15 22 22 N 1.31518 * 120.00262 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99896 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.46853 * 90.00122 * 23 21 19 25 25 H 1.48499 * 109.47277 * 209.99935 * 23 21 19 26 26 H 1.48497 * 109.46927 * 330.00270 * 23 21 19 27 27 H 1.09001 * 109.47085 * 54.97247 * 1 2 3 28 28 H 1.08998 * 109.47061 * 294.97100 * 1 2 3 29 29 H 1.09003 * 109.47306 * 174.96995 * 1 2 3 30 30 H 1.08993 * 109.47115 * 120.00466 * 2 1 3 31 31 H 1.09000 * 109.46815 * 240.00128 * 2 1 3 32 32 H 1.09005 * 109.47356 * 185.00151 * 5 3 2 33 33 H 1.09004 * 109.47784 * 305.00020 * 5 3 2 34 34 H 1.08000 * 119.99830 * 359.97438 * 7 6 5 35 35 H 1.08007 * 119.99985 * 180.02562 * 8 7 6 36 36 H 1.07998 * 120.00282 * 180.02562 * 9 8 7 37 37 H 1.09000 * 109.47388 * 90.00245 * 11 10 9 38 38 H 1.09003 * 109.46607 * 210.00296 * 11 10 9 39 39 H 1.08998 * 109.47121 * 329.99528 * 11 10 9 40 40 H 1.07993 * 120.00124 * 359.97438 * 12 6 5 41 41 H 1.09006 * 109.46686 * 214.84101 * 16 15 13 42 42 H 1.08994 * 109.46993 * 334.84174 * 16 15 13 43 43 H 1.09005 * 109.47063 * 185.01068 * 17 16 15 44 44 H 1.08999 * 109.47114 * 305.00982 * 17 16 15 45 45 H 1.09004 * 109.47208 * 65.01266 * 17 16 15 46 46 H 1.09002 * 109.47041 * 210.00155 * 18 15 13 47 47 H 1.09004 * 109.47349 * 329.99810 * 18 15 13 48 48 H 0.96999 * 119.99896 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 -0.8384 5 6 3.5641 1.4445 -0.1339 6 6 3.9509 0.8849 -1.4786 7 6 4.0857 1.7285 -2.5657 8 6 4.4410 1.2154 -3.7988 9 6 4.6623 -0.1415 -3.9452 10 6 4.5276 -0.9848 -2.8585 11 6 4.7682 -2.4639 -3.0183 12 6 4.1767 -0.4709 -1.6239 13 6 1.6483 2.1137 1.2911 14 8 1.6216 1.4760 2.3224 15 7 1.3275 3.4227 1.2998 16 6 1.4662 4.2190 0.0779 17 6 0.1241 4.2661 -0.6552 18 6 0.8401 4.0493 2.5311 19 6 2.0077 4.5888 3.3164 20 1 3.0123 4.4767 2.9361 21 6 1.7934 5.2266 4.5198 22 7 2.8124 5.6971 5.2053 23 14 0.0556 5.4226 5.1766 24 1 -0.2899 4.2501 6.0200 25 1 -0.0287 6.6609 5.9919 26 1 -0.8958 5.5124 4.0400 27 1 -0.3633 0.5899 -0.8415 28 1 -0.3633 0.4338 0.9316 29 1 -0.3634 -1.0237 -0.0901 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9353 2.4655 -0.0448 33 1 3.9990 0.8298 0.6542 34 1 3.9132 2.7885 -2.4512 35 1 4.5467 1.8745 -4.6479 36 1 4.9404 -0.5424 -4.9087 37 1 5.8187 -2.6838 -2.8276 38 1 4.1478 -3.0116 -2.3089 39 1 4.5121 -2.7661 -4.0337 40 1 4.0762 -1.1292 -0.7737 41 1 1.7742 5.2319 0.3374 42 1 2.2174 3.7650 -0.5683 43 1 0.2480 4.7823 -1.6072 44 1 -0.2271 3.2501 -0.8358 45 1 -0.6048 4.7994 -0.0449 46 1 0.1629 4.8656 2.2800 47 1 0.3102 3.3090 3.1305 48 1 2.6616 6.1461 6.0518 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874148436.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:37 Heat of formation + Delta-G solvation = -54.360916 kcal Electronic energy + Delta-G solvation = -25522.876812 eV Core-core repulsion = 22154.970540 eV Total energy + Delta-G solvation = -3367.906273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.35446 -40.16007 -37.15111 -36.49419 -34.79736 -33.79408 -32.55310 -31.86897 -30.43853 -29.21596 -27.69578 -25.84357 -24.67405 -24.24202 -22.83538 -22.55733 -21.07465 -19.63591 -19.08825 -18.33705 -17.25926 -17.14647 -16.41522 -16.31020 -16.06071 -15.48698 -15.27089 -14.98010 -14.76807 -14.62996 -14.39269 -14.32686 -14.02632 -13.97029 -13.70113 -13.62074 -13.34175 -13.20252 -13.06992 -12.88506 -12.65280 -12.57194 -12.45856 -12.12752 -12.07409 -11.93228 -11.87442 -11.83636 -11.76184 -11.72938 -11.61096 -10.84214 -10.49949 -9.61520 -9.43973 -9.38504 -8.34921 -6.39483 0.47553 0.54569 1.30131 1.34361 1.42774 1.80468 2.29131 2.31442 2.89770 2.99184 3.51040 3.70390 3.96348 4.01012 4.06123 4.10290 4.15570 4.27756 4.34155 4.39852 4.42068 4.51808 4.57648 4.60820 4.63271 4.69678 4.77524 4.83110 4.87339 4.90730 4.93728 4.96396 4.99475 5.02469 5.06913 5.09593 5.24709 5.28696 5.32964 5.37123 5.40470 5.46646 5.64340 5.67170 5.74859 5.79029 6.19676 6.23919 6.61430 6.72865 7.21138 7.44946 8.82205 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.003593 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.255373 B = 7791.000770 C = 7890.433971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.086 4.086 4 H 0.113 0.887 5 C -0.067 4.067 6 C -0.077 4.077 7 C -0.131 4.131 8 C -0.116 4.116 9 C -0.130 4.130 10 C -0.093 4.093 11 C -0.114 4.114 12 C -0.128 4.128 13 C 0.506 3.494 14 O -0.592 6.592 15 N -0.600 5.600 16 C 0.097 3.903 17 C -0.161 4.161 18 C 0.227 3.773 19 C -0.533 4.533 20 H 0.027 0.973 21 C 0.010 3.990 22 N -0.946 5.946 23 Si 0.947 3.053 24 H -0.277 1.277 25 H -0.273 1.273 26 H -0.238 1.238 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.131 0.869 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.014 0.986 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -11.181 -23.948 26.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.107 4.107 4 H 0.131 0.869 5 C -0.105 4.105 6 C -0.077 4.077 7 C -0.149 4.149 8 C -0.133 4.133 9 C -0.148 4.148 10 C -0.093 4.093 11 C -0.170 4.170 12 C -0.146 4.146 13 C 0.296 3.704 14 O -0.472 6.472 15 N -0.331 5.331 16 C -0.026 4.026 17 C -0.219 4.219 18 C 0.104 3.896 19 C -0.571 4.571 20 H 0.045 0.955 21 C -0.188 4.188 22 N -0.586 5.586 23 Si 0.769 3.231 24 H -0.203 1.203 25 H -0.198 1.198 26 H -0.162 1.162 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.149 0.851 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.032 0.968 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.393 -11.385 -23.264 25.938 hybrid contribution -0.171 0.511 1.464 1.560 sum -1.563 -10.874 -21.800 24.412 Atomic orbital electron populations 1.21762 0.95310 1.02580 1.00974 1.21470 0.96465 0.93700 1.02605 1.21371 0.96695 0.98222 0.94418 0.86920 1.20417 0.93335 1.01527 0.95202 1.19643 0.99715 0.94110 0.94207 1.21237 1.00832 1.00153 0.92691 1.21396 0.98616 0.95850 0.97468 1.21330 1.00828 0.93549 0.99076 1.20186 0.98645 0.97379 0.93072 1.20834 1.02515 0.90226 1.03467 1.21072 1.01198 0.94609 0.97748 1.21252 0.76167 0.81801 0.91225 1.90620 1.54677 1.65357 1.36590 1.48095 1.64158 1.09029 1.11807 1.21782 0.99437 0.96400 0.84931 1.22175 0.96160 1.02607 1.01005 1.19262 0.94018 0.92771 0.83535 1.21549 0.93567 1.36384 1.05646 0.95466 1.25855 1.01877 0.94530 0.96505 1.70054 1.33088 1.39949 1.15492 0.85731 0.79747 0.77951 0.79624 1.20277 1.19850 1.16152 0.91260 0.95509 0.91027 0.93105 0.88846 0.91259 0.92146 0.85138 0.83853 0.84096 0.90714 0.91376 0.90152 0.86289 0.91118 0.88777 0.88554 0.92185 0.93283 0.93460 0.96776 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.65 71.98 0.69 -3.11 16 2 C -0.10 -2.84 4.90 30.59 0.15 -2.69 16 3 C -0.09 -2.53 1.35 -11.54 -0.02 -2.55 16 4 H 0.11 2.74 5.84 -2.39 -0.01 2.73 16 5 C -0.07 -1.91 4.64 29.85 0.14 -1.77 16 6 C -0.08 -1.76 4.71 -19.86 -0.09 -1.86 16 7 C -0.13 -2.58 9.70 22.27 0.22 -2.36 16 8 C -0.12 -1.88 10.05 22.27 0.22 -1.65 16 9 C -0.13 -2.04 9.70 22.27 0.22 -1.83 16 10 C -0.09 -1.64 5.88 -19.86 -0.12 -1.76 16 11 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 12 C -0.13 -2.74 7.54 22.27 0.17 -2.57 16 13 C 0.51 21.06 5.80 87.66 0.51 21.57 16 14 O -0.59 -30.73 15.60 -3.04 -0.05 -30.78 16 15 N -0.60 -24.96 2.46 -826.15 -2.03 -26.99 16 16 C 0.10 2.93 5.70 86.38 0.49 3.42 16 17 C -0.16 -3.70 10.04 71.98 0.72 -2.98 16 18 C 0.23 11.34 4.21 85.63 0.36 11.70 16 19 C -0.53 -32.14 9.94 25.60 0.25 -31.89 16 20 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 21 C 0.01 0.61 5.47 84.65 0.46 1.07 16 22 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 23 Si 0.95 45.40 27.47 68.60 1.88 47.29 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.03 0.84 7.40 -2.39 -0.02 0.83 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.62 7.67 -2.39 -0.02 1.60 16 31 H 0.09 2.09 5.92 -2.39 -0.01 2.07 16 32 H 0.07 2.07 7.56 -2.38 -0.02 2.05 16 33 H 0.06 1.95 8.08 -2.38 -0.02 1.93 16 34 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 39 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 40 H 0.12 2.53 8.00 -2.91 -0.02 2.51 16 41 H 0.07 2.31 8.11 -2.38 -0.02 2.29 16 42 H 0.09 2.35 5.73 -2.39 -0.01 2.34 16 43 H 0.10 1.56 8.14 -2.38 -0.02 1.55 16 44 H 0.06 1.31 7.63 -2.39 -0.02 1.30 16 45 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 47 H 0.01 0.76 6.93 -2.38 -0.02 0.75 16 48 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -78.14 382.94 6.06 -72.08 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.86 Total: 18.97 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 5.09 Total: -19.98 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -1.73 Total: -87.58 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.05 Total: -30.78 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -78.14 6.06 -72.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874148436.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.718 kcal (2) G-P(sol) polarization free energy of solvation -78.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds