Wall clock time and date at job start Tue Mar 31 2020 11:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46987 * 2 1 4 4 H 1.09000 * 109.46591 * 305.38604 * 3 2 1 5 5 C 1.52994 * 109.47160 * 65.38624 * 3 2 1 6 6 C 1.50695 * 109.47028 * 187.22801 * 5 3 2 7 7 C 1.38262 * 119.99887 * 82.49451 * 6 5 3 8 8 C 1.38207 * 120.00110 * 180.02562 * 7 6 5 9 9 C 1.38258 * 120.00239 * 359.95693 * 8 7 6 10 10 C 1.38216 * 119.99762 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99749 * 179.97438 * 10 9 8 12 12 C 1.38221 * 120.00545 * 262.21815 * 6 5 3 13 13 C 1.50693 * 109.46854 * 185.38760 * 3 2 1 14 14 O 1.21280 * 120.00111 * 239.99866 * 13 3 2 15 15 N 1.34780 * 120.00206 * 60.00002 * 13 3 2 16 16 C 1.46508 * 119.99842 * 359.97438 * 15 13 3 17 17 C 1.46498 * 120.00456 * 180.02562 * 15 13 3 18 18 H 1.09001 * 109.46872 * 359.97438 * 17 15 13 19 19 C 1.52998 * 109.47352 * 119.99888 * 17 15 13 20 20 C 1.50700 * 109.47122 * 240.00196 * 17 15 13 21 21 H 1.08005 * 119.99950 * 359.97438 * 20 17 15 22 22 C 1.37872 * 120.00112 * 179.97438 * 20 17 15 23 23 N 1.31519 * 120.00120 * 179.97438 * 22 20 17 24 24 Si 1.86802 * 120.00183 * 359.97438 * 22 20 17 25 25 H 1.48495 * 109.46986 * 90.00163 * 24 22 20 26 26 H 1.48499 * 109.47140 * 210.00203 * 24 22 20 27 27 H 1.48497 * 109.46743 * 330.00399 * 24 22 20 28 28 H 1.08994 * 109.47164 * 183.93118 * 1 2 3 29 29 H 1.08995 * 109.47331 * 303.93323 * 1 2 3 30 30 H 1.08998 * 109.46769 * 63.93558 * 1 2 3 31 31 H 1.08999 * 109.47327 * 239.99506 * 2 1 3 32 32 H 1.09002 * 109.46446 * 119.99613 * 2 1 3 33 33 H 1.09001 * 109.47454 * 307.23401 * 5 3 2 34 34 H 1.09008 * 109.47299 * 67.23380 * 5 3 2 35 35 H 1.07998 * 120.00040 * 359.97438 * 7 6 5 36 36 H 1.08001 * 120.00175 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.00268 * 180.02562 * 9 8 7 38 38 H 1.09006 * 109.47134 * 90.00265 * 11 10 9 39 39 H 1.09001 * 109.46857 * 209.99878 * 11 10 9 40 40 H 1.08993 * 109.47453 * 330.00375 * 11 10 9 41 41 H 1.07997 * 119.99437 * 359.97438 * 12 6 5 42 42 H 1.08999 * 109.46938 * 270.00280 * 16 15 13 43 43 H 1.08992 * 109.47032 * 29.99860 * 16 15 13 44 44 H 1.08995 * 109.47313 * 150.00188 * 16 15 13 45 45 H 1.09001 * 109.46589 * 179.97438 * 19 17 15 46 46 H 1.09001 * 109.47266 * 60.00077 * 19 17 15 47 47 H 1.08999 * 109.47131 * 299.99651 * 19 17 15 48 48 H 0.96999 * 120.00048 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6001 1.9834 -0.8378 5 6 1.6436 2.1236 1.3114 6 6 1.9877 3.5890 1.2403 7 6 1.1252 4.4722 0.6177 8 6 1.4409 5.8161 0.5520 9 6 2.6188 6.2776 1.1097 10 6 3.4809 5.3948 1.7325 11 6 4.7651 5.8977 2.3399 12 6 3.1627 4.0512 1.8026 13 6 3.5411 1.4446 -0.1334 14 8 4.2264 1.9419 0.7349 15 7 4.1221 0.8938 -1.2177 16 6 3.2943 0.2926 -2.2664 17 6 5.5813 0.8953 -1.3472 18 1 6.0227 1.3816 -0.4772 19 6 6.0868 -0.5459 -1.4376 20 6 5.9742 1.6447 -2.5942 21 1 5.2130 2.0763 -3.2272 22 6 7.3054 1.7793 -2.9270 23 7 7.6483 2.4329 -4.0156 24 14 8.6221 1.0334 -1.8318 25 1 8.9077 -0.3544 -2.2761 26 1 9.8609 1.8471 -1.9226 27 1 8.1441 1.0146 -0.4259 28 1 -0.3633 -1.0252 0.0705 29 1 -0.3634 0.5736 0.8526 30 1 -0.3633 0.4515 -0.9231 31 1 1.8935 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.5714 2.0094 1.4705 34 1 2.1847 1.6631 2.1381 35 1 0.2051 4.1118 0.1819 36 1 0.7674 6.5060 0.0653 37 1 2.8654 7.3279 1.0588 38 1 4.5909 6.1762 3.3792 39 1 5.5198 5.1124 2.2958 40 1 5.1136 6.7681 1.7840 41 1 3.8341 3.3621 2.2932 42 1 3.1336 -0.7620 -2.0425 43 1 2.3334 0.8054 -2.3094 44 1 3.7999 0.3872 -3.2273 45 1 7.1725 -0.5447 -1.5344 46 1 5.6454 -1.0319 -2.3077 47 1 5.8027 -1.0879 -0.5356 48 1 8.5848 2.5273 -4.2499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874357725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:13 Heat of formation + Delta-G solvation = -18.036783 kcal Electronic energy + Delta-G solvation = -26077.140946 eV Core-core repulsion = 22710.809806 eV Total energy + Delta-G solvation = -3366.331140 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.99811 -38.73609 -35.84373 -35.30504 -32.95244 -32.45135 -31.42434 -30.37796 -28.36378 -26.62709 -26.22878 -25.28778 -24.96022 -22.04538 -21.79280 -20.83559 -19.90883 -18.19619 -17.03502 -16.42578 -16.24424 -15.54129 -15.09056 -14.97334 -14.80386 -14.15597 -14.06785 -13.58895 -13.33612 -13.17735 -12.89780 -12.77145 -12.64178 -12.48831 -12.26325 -12.20460 -11.99238 -11.86811 -11.85052 -11.56261 -11.48280 -11.27885 -11.12876 -10.95631 -10.73206 -10.59750 -10.50735 -10.31362 -10.11698 -9.63381 -9.31668 -8.88031 -8.62353 -8.31745 -8.25554 -7.65338 -6.13620 -4.13705 1.65499 1.78588 3.23190 3.35538 3.36711 3.39347 3.86655 4.07107 4.35708 4.84244 4.88066 4.98599 5.11690 5.15630 5.19750 5.25396 5.37489 5.43826 5.48752 5.53294 5.63330 5.71972 5.79194 5.81757 5.82457 5.86701 5.90344 5.97093 6.03816 6.07361 6.12716 6.21466 6.26936 6.27594 6.31121 6.41755 6.46877 6.50886 6.52986 6.75324 6.84055 6.94765 7.04997 7.16497 7.37385 7.43329 7.65868 8.24040 8.51321 8.86880 9.00545 9.47881 10.99235 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011648 B = 0.005699 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.214602 B = 4912.133639 C = 6413.512896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.101 4.101 4 H 0.093 0.907 5 C -0.060 4.060 6 C -0.079 4.079 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.126 4.126 10 C -0.094 4.094 11 C -0.113 4.113 12 C -0.074 4.074 13 C 0.511 3.489 14 O -0.546 6.546 15 N -0.587 5.587 16 C 0.081 3.919 17 C 0.230 3.770 18 H 0.062 0.938 19 C -0.159 4.159 20 C -0.525 4.525 21 H 0.078 0.922 22 C 0.075 3.925 23 N -0.896 5.896 24 Si 0.883 3.117 25 H -0.278 1.278 26 H -0.295 1.295 27 H -0.264 1.264 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.134 0.866 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.054 0.946 47 H 0.032 0.968 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.407 -0.932 9.538 17.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.123 4.123 4 H 0.111 0.889 5 C -0.097 4.097 6 C -0.079 4.079 7 C -0.145 4.145 8 C -0.145 4.145 9 C -0.144 4.144 10 C -0.094 4.094 11 C -0.169 4.169 12 C -0.092 4.092 13 C 0.299 3.701 14 O -0.425 6.425 15 N -0.318 5.318 16 C -0.062 4.062 17 C 0.128 3.872 18 H 0.079 0.921 19 C -0.217 4.217 20 C -0.564 4.564 21 H 0.096 0.904 22 C -0.128 4.128 23 N -0.534 5.534 24 Si 0.713 3.287 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.189 1.189 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.152 0.848 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.869 -0.612 9.859 17.028 hybrid contribution 0.830 -0.351 0.043 0.902 sum -13.040 -0.963 9.903 16.402 Atomic orbital electron populations 1.21829 0.95453 1.01581 1.01981 1.21803 0.96155 0.95058 1.03751 1.21346 0.93890 0.97531 0.99503 0.88941 1.20465 1.00799 0.91418 0.97044 1.19760 0.94939 0.95016 0.98231 1.20918 0.99562 0.93384 1.00659 1.20953 0.97295 0.95596 1.00691 1.20947 0.94855 0.99036 0.99578 1.19951 0.96448 0.93934 0.99039 1.20760 0.94758 1.01570 0.99834 1.21187 0.95617 0.94262 0.98144 1.20377 0.89667 0.78121 0.81966 1.90576 1.65159 1.45767 1.40987 1.47823 1.08256 1.56496 1.19188 1.21770 0.94811 0.96318 0.93348 1.19234 0.75976 0.92679 0.99292 0.92064 1.22440 1.00297 0.99295 0.99714 1.21171 0.93433 1.34551 1.07209 0.90432 1.24863 0.98315 0.94742 0.94830 1.69880 1.17603 1.41499 1.24372 0.86916 0.81249 0.78392 0.82106 1.20472 1.22205 1.18854 0.92705 0.92424 0.92625 0.89921 0.91643 0.90652 0.90482 0.86797 0.86730 0.86817 0.91790 0.91206 0.91912 0.84848 0.93560 0.92355 0.89904 0.93322 0.92686 0.94939 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.77 37.16 0.36 -0.98 16 2 C -0.13 -1.49 5.05 -26.72 -0.14 -1.63 16 3 C -0.10 -1.44 1.36 -91.78 -0.12 -1.57 16 4 H 0.09 1.30 7.39 -51.93 -0.38 0.91 16 5 C -0.06 -0.80 4.46 -27.89 -0.12 -0.93 16 6 C -0.08 -1.23 4.73 -104.62 -0.49 -1.72 16 7 C -0.13 -1.79 9.73 -39.58 -0.39 -2.17 16 8 C -0.13 -1.77 10.05 -39.59 -0.40 -2.16 16 9 C -0.13 -1.85 9.70 -39.58 -0.38 -2.23 16 10 C -0.09 -1.50 5.88 -104.63 -0.62 -2.11 16 11 C -0.11 -1.56 10.01 36.01 0.36 -1.20 16 12 C -0.07 -1.27 7.65 -39.58 -0.30 -1.57 16 13 C 0.51 9.90 6.84 -10.99 -0.08 9.82 16 14 O -0.55 -12.13 11.73 5.56 0.07 -12.07 16 15 N -0.59 -11.92 2.75 -175.27 -0.48 -12.41 16 16 C 0.08 1.32 7.80 59.85 0.47 1.79 16 17 C 0.23 5.55 2.23 -69.08 -0.15 5.40 16 18 H 0.06 1.65 5.95 -51.93 -0.31 1.34 16 19 C -0.16 -3.44 8.68 37.16 0.32 -3.12 16 20 C -0.53 -14.60 8.57 -34.44 -0.30 -14.90 16 21 H 0.08 2.33 7.58 -52.48 -0.40 1.93 16 22 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 23 N -0.90 -27.17 13.96 55.43 0.77 -26.39 16 24 Si 0.88 22.05 24.38 -169.99 -4.14 17.90 16 25 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 27 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.48 6.27 -51.93 -0.33 0.16 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.95 4.44 -51.93 -0.23 0.72 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.81 6.19 -51.93 -0.32 0.49 16 34 H 0.08 1.09 7.76 -51.92 -0.40 0.69 16 35 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 40 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 41 H 0.13 2.43 6.63 -52.49 -0.35 2.08 16 42 H 0.05 0.64 6.86 -51.93 -0.36 0.28 16 43 H 0.06 0.80 6.06 -51.93 -0.31 0.49 16 44 H 0.08 1.50 7.02 -51.93 -0.36 1.14 16 45 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 46 H 0.05 1.11 7.67 -51.93 -0.40 0.71 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -32.16 363.74 -8.10 -40.26 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.73 Total: 4.45 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.07 Total: -17.24 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.29 Total: -38.80 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.16 -8.10 -40.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874357725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.227 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds