Wall clock time and date at job start Tue Mar 31 2020 11:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46987 * 2 1 4 4 H 1.09000 * 109.46591 * 305.38604 * 3 2 1 5 5 C 1.52994 * 109.47160 * 65.38624 * 3 2 1 6 6 C 1.50695 * 109.47028 * 187.22801 * 5 3 2 7 7 C 1.38262 * 119.99887 * 82.49451 * 6 5 3 8 8 C 1.38207 * 120.00110 * 180.02562 * 7 6 5 9 9 C 1.38258 * 120.00239 * 359.95693 * 8 7 6 10 10 C 1.38216 * 119.99762 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99749 * 179.97438 * 10 9 8 12 12 C 1.38221 * 120.00545 * 262.21815 * 6 5 3 13 13 C 1.50693 * 109.46854 * 185.38760 * 3 2 1 14 14 O 1.21280 * 120.00111 * 239.99866 * 13 3 2 15 15 N 1.34780 * 120.00206 * 60.00002 * 13 3 2 16 16 C 1.46508 * 119.99842 * 359.97438 * 15 13 3 17 17 C 1.46498 * 120.00456 * 180.02562 * 15 13 3 18 18 H 1.09001 * 109.46872 * 359.97438 * 17 15 13 19 19 C 1.52998 * 109.47352 * 119.99888 * 17 15 13 20 20 C 1.50700 * 109.47122 * 240.00196 * 17 15 13 21 21 H 1.08005 * 119.99950 * 359.97438 * 20 17 15 22 22 C 1.37872 * 120.00112 * 179.97438 * 20 17 15 23 23 N 1.31519 * 120.00120 * 179.97438 * 22 20 17 24 24 Si 1.86802 * 120.00183 * 359.97438 * 22 20 17 25 25 H 1.48495 * 109.46986 * 90.00163 * 24 22 20 26 26 H 1.48499 * 109.47140 * 210.00203 * 24 22 20 27 27 H 1.48497 * 109.46743 * 330.00399 * 24 22 20 28 28 H 1.08994 * 109.47164 * 183.93118 * 1 2 3 29 29 H 1.08995 * 109.47331 * 303.93323 * 1 2 3 30 30 H 1.08998 * 109.46769 * 63.93558 * 1 2 3 31 31 H 1.08999 * 109.47327 * 239.99506 * 2 1 3 32 32 H 1.09002 * 109.46446 * 119.99613 * 2 1 3 33 33 H 1.09001 * 109.47454 * 307.23401 * 5 3 2 34 34 H 1.09008 * 109.47299 * 67.23380 * 5 3 2 35 35 H 1.07998 * 120.00040 * 359.97438 * 7 6 5 36 36 H 1.08001 * 120.00175 * 179.97438 * 8 7 6 37 37 H 1.08000 * 120.00268 * 180.02562 * 9 8 7 38 38 H 1.09006 * 109.47134 * 90.00265 * 11 10 9 39 39 H 1.09001 * 109.46857 * 209.99878 * 11 10 9 40 40 H 1.08993 * 109.47453 * 330.00375 * 11 10 9 41 41 H 1.07997 * 119.99437 * 359.97438 * 12 6 5 42 42 H 1.08999 * 109.46938 * 270.00280 * 16 15 13 43 43 H 1.08992 * 109.47032 * 29.99860 * 16 15 13 44 44 H 1.08995 * 109.47313 * 150.00188 * 16 15 13 45 45 H 1.09001 * 109.46589 * 179.97438 * 19 17 15 46 46 H 1.09001 * 109.47266 * 60.00077 * 19 17 15 47 47 H 1.08999 * 109.47131 * 299.99651 * 19 17 15 48 48 H 0.96999 * 120.00048 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6001 1.9834 -0.8378 5 6 1.6436 2.1236 1.3114 6 6 1.9877 3.5890 1.2403 7 6 1.1252 4.4722 0.6177 8 6 1.4409 5.8161 0.5520 9 6 2.6188 6.2776 1.1097 10 6 3.4809 5.3948 1.7325 11 6 4.7651 5.8977 2.3399 12 6 3.1627 4.0512 1.8026 13 6 3.5411 1.4446 -0.1334 14 8 4.2264 1.9419 0.7349 15 7 4.1221 0.8938 -1.2177 16 6 3.2943 0.2926 -2.2664 17 6 5.5813 0.8953 -1.3472 18 1 6.0227 1.3816 -0.4772 19 6 6.0868 -0.5459 -1.4376 20 6 5.9742 1.6447 -2.5942 21 1 5.2130 2.0763 -3.2272 22 6 7.3054 1.7793 -2.9270 23 7 7.6483 2.4329 -4.0156 24 14 8.6221 1.0334 -1.8318 25 1 8.9077 -0.3544 -2.2761 26 1 9.8609 1.8471 -1.9226 27 1 8.1441 1.0146 -0.4259 28 1 -0.3633 -1.0252 0.0705 29 1 -0.3634 0.5736 0.8526 30 1 -0.3633 0.4515 -0.9231 31 1 1.8935 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.5714 2.0094 1.4705 34 1 2.1847 1.6631 2.1381 35 1 0.2051 4.1118 0.1819 36 1 0.7674 6.5060 0.0653 37 1 2.8654 7.3279 1.0588 38 1 4.5909 6.1762 3.3792 39 1 5.5198 5.1124 2.2958 40 1 5.1136 6.7681 1.7840 41 1 3.8341 3.3621 2.2932 42 1 3.1336 -0.7620 -2.0425 43 1 2.3334 0.8054 -2.3094 44 1 3.7999 0.3872 -3.2273 45 1 7.1725 -0.5447 -1.5344 46 1 5.6454 -1.0319 -2.3077 47 1 5.8027 -1.0879 -0.5356 48 1 8.5848 2.5273 -4.2499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874357725.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:12 Heat of formation + Delta-G solvation = -36.178911 kcal Electronic energy + Delta-G solvation = -26077.927648 eV Core-core repulsion = 22710.809806 eV Total energy + Delta-G solvation = -3367.117842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35625 -39.98548 -37.37514 -36.64126 -34.75102 -33.76549 -32.59173 -32.07988 -29.42695 -27.75729 -27.64496 -27.17803 -26.26869 -23.43089 -22.89888 -22.05346 -21.25266 -19.67856 -18.90502 -18.03440 -17.49434 -17.19379 -16.53107 -16.17367 -16.09938 -15.57677 -15.13415 -15.03677 -14.80508 -14.58234 -14.35304 -14.06665 -13.99474 -13.84731 -13.63047 -13.46442 -13.31326 -13.12879 -13.05720 -13.01130 -12.69498 -12.64737 -12.60509 -12.36366 -12.05825 -11.97787 -11.67944 -11.60699 -11.54673 -11.35411 -11.30608 -10.81095 -10.37347 -9.53664 -9.39370 -9.26135 -8.36958 -6.40547 0.51867 0.62347 1.22417 1.31992 1.40668 1.88246 2.25018 2.36683 2.92188 2.98749 3.66242 3.80763 3.95020 4.05730 4.10398 4.27065 4.28582 4.37434 4.44122 4.46883 4.50614 4.56572 4.58373 4.62188 4.66771 4.68398 4.75891 4.77370 4.82987 4.87981 4.94535 4.97957 5.02889 5.07563 5.14188 5.28184 5.28568 5.33069 5.35218 5.40771 5.51131 5.55894 5.63995 5.74359 5.80974 5.89916 6.20803 6.26632 6.61420 6.82889 7.22177 7.49765 8.79346 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011648 B = 0.005699 C = 0.004365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.214602 B = 4912.133639 C = 6413.512896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.088 4.088 4 H 0.102 0.898 5 C -0.055 4.055 6 C -0.092 4.092 7 C -0.130 4.130 8 C -0.130 4.130 9 C -0.138 4.138 10 C -0.117 4.117 11 C -0.110 4.110 12 C -0.104 4.104 13 C 0.498 3.502 14 O -0.582 6.582 15 N -0.598 5.598 16 C 0.080 3.920 17 C 0.234 3.766 18 H 0.028 0.972 19 C -0.151 4.151 20 C -0.523 4.523 21 H 0.042 0.958 22 C 0.022 3.978 23 N -0.940 5.940 24 Si 0.941 3.059 25 H -0.253 1.253 26 H -0.296 1.296 27 H -0.264 1.264 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.133 0.867 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.039 0.961 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.970 -2.117 9.916 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.109 4.109 4 H 0.119 0.881 5 C -0.092 4.092 6 C -0.092 4.092 7 C -0.148 4.148 8 C -0.148 4.148 9 C -0.156 4.156 10 C -0.117 4.117 11 C -0.167 4.167 12 C -0.122 4.122 13 C 0.287 3.713 14 O -0.463 6.463 15 N -0.329 5.329 16 C -0.062 4.062 17 C 0.130 3.870 18 H 0.046 0.954 19 C -0.209 4.209 20 C -0.561 4.561 21 H 0.060 0.940 22 C -0.176 4.176 23 N -0.580 5.580 24 Si 0.768 3.232 25 H -0.179 1.179 26 H -0.224 1.224 27 H -0.189 1.189 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.080 0.920 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.467 -1.825 10.232 19.473 hybrid contribution 1.558 0.107 -0.085 1.564 sum -14.909 -1.718 10.148 18.117 Atomic orbital electron populations 1.21804 0.92888 1.02811 1.02808 1.21793 0.98213 0.92579 1.03645 1.21345 0.89556 0.99879 1.00149 0.88057 1.20500 1.02632 0.90003 0.96072 1.20051 0.94591 0.96432 0.98106 1.21289 1.00264 0.93296 0.99968 1.21392 0.97235 0.96288 0.99838 1.21255 0.95111 0.99871 0.99365 1.20257 0.97527 0.94072 0.99837 1.20759 0.93627 1.01034 1.01260 1.21174 0.96584 0.94548 0.99894 1.21430 0.91987 0.76836 0.81022 1.90580 1.66588 1.46919 1.42213 1.47909 1.07032 1.57242 1.20669 1.21974 0.94906 0.98391 0.90958 1.18863 0.78869 0.93597 0.95663 0.95423 1.22284 0.99572 0.97510 1.01541 1.21388 0.92722 1.34222 1.07804 0.93956 1.25636 1.00622 0.95330 0.96039 1.70007 1.18220 1.43445 1.26332 0.85980 0.78259 0.78751 0.80177 1.17859 1.22370 1.18917 0.91338 0.91687 0.91708 0.89756 0.92084 0.87092 0.91953 0.83674 0.83781 0.84890 0.89747 0.93394 0.90974 0.87468 0.90318 0.89610 0.92384 0.94281 0.91243 0.92617 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.77 71.99 0.70 -1.25 16 2 C -0.12 -2.46 5.05 30.60 0.15 -2.31 16 3 C -0.09 -2.34 1.36 -11.54 -0.02 -2.35 16 4 H 0.10 2.54 7.39 -2.39 -0.02 2.52 16 5 C -0.05 -1.39 4.46 29.84 0.13 -1.25 16 6 C -0.09 -2.77 4.73 -19.86 -0.09 -2.87 16 7 C -0.13 -3.36 9.73 22.27 0.22 -3.14 16 8 C -0.13 -3.32 10.05 22.27 0.22 -3.10 16 9 C -0.14 -3.94 9.70 22.27 0.22 -3.72 16 10 C -0.12 -3.84 5.88 -19.87 -0.12 -3.96 16 11 C -0.11 -3.19 10.01 71.24 0.71 -2.48 16 12 C -0.10 -3.69 7.65 22.27 0.17 -3.52 16 13 C 0.50 19.26 6.84 87.65 0.60 19.86 16 14 O -0.58 -26.88 11.73 -3.03 -0.04 -26.92 16 15 N -0.60 -24.15 2.75 -826.81 -2.28 -26.43 16 16 C 0.08 2.47 7.80 127.77 1.00 3.47 16 17 C 0.23 11.41 2.23 44.25 0.10 11.51 16 18 H 0.03 1.54 5.95 -2.39 -0.01 1.53 16 19 C -0.15 -6.33 8.68 71.98 0.62 -5.71 16 20 C -0.52 -29.97 8.57 25.60 0.22 -29.75 16 21 H 0.04 2.66 7.58 -2.91 -0.02 2.64 16 22 C 0.02 1.30 5.45 84.65 0.46 1.77 16 23 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 24 Si 0.94 46.13 24.38 68.60 1.67 47.81 16 25 H -0.25 -11.36 6.87 99.48 0.68 -10.67 16 26 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.26 -12.88 6.53 99.48 0.65 -12.23 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.79 6.27 -2.39 -0.01 0.77 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.64 4.44 -2.39 -0.01 1.63 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.11 1.99 6.19 -2.39 -0.01 1.98 16 34 H 0.06 1.76 7.76 -2.38 -0.02 1.74 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 37 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.05 1.55 8.09 -2.39 -0.02 1.53 16 40 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 41 H 0.11 4.26 6.63 -2.91 -0.02 4.24 16 42 H 0.08 1.93 6.86 -2.39 -0.02 1.91 16 43 H 0.09 2.15 6.06 -2.39 -0.01 2.13 16 44 H 0.06 2.09 7.02 -2.39 -0.02 2.07 16 45 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 46 H 0.07 2.67 7.67 -2.39 -0.02 2.65 16 47 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -74.01 363.74 5.82 -68.18 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.86 Total: 24.53 kcal Atomic # 6 Polarization: -34.10 SS G_CDS: 5.30 Total: -28.79 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -1.98 Total: -84.81 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.04 Total: -26.92 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.67 Total: 47.81 kcal Total: -74.01 5.82 -68.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874357725.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.005 kcal (2) G-P(sol) polarization free energy of solvation -74.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds