Wall clock time and date at job start Tue Mar 31 2020 11:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 H 1.08998 * 109.47198 * 181.49775 * 3 2 1 5 5 C 1.52996 * 109.47222 * 61.49726 * 3 2 1 6 6 C 1.50699 * 109.47410 * 64.99638 * 5 3 2 7 7 C 1.38257 * 119.99899 * 89.99787 * 6 5 3 8 8 C 1.38207 * 120.00248 * 179.97438 * 7 6 5 9 9 C 1.38258 * 120.00125 * 359.97438 * 8 7 6 10 10 C 1.38214 * 119.99664 * 0.02562 * 9 8 7 11 11 C 1.50704 * 120.00027 * 179.97438 * 10 9 8 12 12 C 1.38217 * 120.00318 * 269.73138 * 6 5 3 13 13 C 1.50700 * 109.47259 * 301.49690 * 3 2 1 14 14 O 1.21282 * 120.00142 * 94.17982 * 13 3 2 15 15 N 1.34778 * 119.99969 * 274.18491 * 13 3 2 16 16 C 1.46493 * 120.00184 * 175.73275 * 15 13 3 17 17 C 1.53001 * 109.47579 * 179.97438 * 16 15 13 18 18 C 1.52993 * 109.47435 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47307 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00147 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00603 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00576 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99420 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46991 * 90.00503 * 23 21 19 25 25 H 1.48501 * 109.46891 * 210.00000 * 23 21 19 26 26 H 1.48498 * 109.47508 * 330.00100 * 23 21 19 27 27 H 1.08994 * 109.47296 * 54.82882 * 1 2 3 28 28 H 1.09001 * 109.46944 * 294.82406 * 1 2 3 29 29 H 1.09000 * 109.46595 * 174.82673 * 1 2 3 30 30 H 1.08994 * 109.47377 * 120.00100 * 2 1 3 31 31 H 1.08993 * 109.47331 * 240.00152 * 2 1 3 32 32 H 1.09000 * 109.47347 * 184.99843 * 5 3 2 33 33 H 1.09008 * 109.47279 * 304.99784 * 5 3 2 34 34 H 1.08004 * 120.00199 * 0.02562 * 7 6 5 35 35 H 1.08006 * 120.00218 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.00325 * 180.02562 * 9 8 7 37 37 H 1.08994 * 109.47017 * 89.99692 * 11 10 9 38 38 H 1.08998 * 109.46898 * 210.00232 * 11 10 9 39 39 H 1.09005 * 109.46871 * 329.99962 * 11 10 9 40 40 H 1.07998 * 119.99812 * 359.97438 * 12 6 5 41 41 H 0.96999 * 119.99763 * 355.72853 * 15 13 3 42 42 H 1.09003 * 109.47103 * 299.99492 * 16 15 13 43 43 H 1.09004 * 109.47418 * 59.99527 * 16 15 13 44 44 H 1.09003 * 109.46718 * 300.00008 * 17 16 15 45 45 H 1.09004 * 109.46903 * 59.99491 * 17 16 15 46 46 H 1.09003 * 109.47299 * 299.99804 * 18 17 16 47 47 H 1.08997 * 109.47517 * 60.00271 * 18 17 16 48 48 H 0.96998 * 120.00682 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 -0.0269 5 6 1.5609 2.1528 1.2676 6 6 2.1917 1.5069 2.4743 7 6 3.4042 1.9695 2.9513 8 6 3.9825 1.3775 4.0583 9 6 3.3484 0.3231 4.6889 10 6 2.1363 -0.1392 4.2120 11 6 1.4453 -1.2889 4.8990 12 6 1.5556 0.4558 3.1073 13 6 1.5075 2.1636 -1.2115 14 8 0.4878 2.8150 -1.1299 15 7 2.1645 2.0844 -2.3856 16 6 1.5988 2.7070 -3.5850 17 6 2.5357 2.4725 -4.7716 18 6 1.9446 3.1222 -6.0243 19 6 2.8671 2.8907 -7.1932 20 1 3.7833 2.3353 -7.0565 21 6 2.5417 3.3879 -8.4374 22 7 3.3470 3.1863 -9.4574 23 14 0.9568 4.3478 -8.6742 24 1 1.2127 5.7915 -8.4386 25 1 0.4624 4.1527 -10.0608 26 1 -0.0645 3.8625 -7.7116 27 1 -0.3633 0.5919 -0.8400 28 1 -0.3633 0.4315 0.9327 29 1 -0.3632 -1.0235 -0.0927 30 1 1.8934 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8482 3.2034 1.2261 33 1 0.4760 2.0754 1.3396 34 1 3.8990 2.7939 2.4595 35 1 4.9294 1.7391 4.4312 36 1 3.8000 -0.1392 5.5541 37 1 0.7855 -0.9040 5.6764 38 1 0.8598 -1.8489 4.1698 39 1 2.1910 -1.9453 5.3475 40 1 0.6063 0.0975 2.7375 41 1 3.0120 1.6152 -2.4364 42 1 0.6249 2.2664 -3.7981 43 1 1.4845 3.7782 -3.4188 44 1 3.5095 2.9134 -4.5583 45 1 2.6504 1.4014 -4.9379 46 1 0.9710 2.6809 -6.2375 47 1 1.8297 4.1933 -5.8584 48 1 3.1179 3.5357 -10.3327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874371748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:44 Heat of formation + Delta-G solvation = -53.903043 kcal Electronic energy + Delta-G solvation = -24006.345133 eV Core-core repulsion = 20638.458715 eV Total energy + Delta-G solvation = -3367.886418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.41832 -39.37859 -36.15433 -35.28037 -33.34596 -33.15489 -31.70760 -31.37241 -29.21088 -27.39011 -27.06337 -25.26649 -23.23250 -22.45175 -21.99838 -20.81144 -20.36504 -19.13555 -17.05274 -16.84268 -16.54506 -16.07817 -15.78600 -15.52828 -15.08579 -14.67472 -14.53963 -14.09014 -14.02992 -13.70102 -13.39797 -13.14653 -13.02134 -12.84778 -12.70251 -12.68101 -12.25518 -12.06439 -11.98690 -11.90788 -11.50941 -11.33605 -11.17084 -11.08367 -11.00225 -10.89130 -10.79791 -10.16866 -9.95189 -9.77322 -9.46439 -9.23518 -9.02536 -8.85639 -8.80807 -8.56454 -6.07132 -4.05870 1.07714 1.12576 2.73792 3.28884 3.30663 3.38175 3.42382 3.53037 4.43566 4.44123 4.46952 4.59110 4.65181 4.73812 4.79222 4.88930 5.02351 5.15121 5.18789 5.24112 5.26886 5.28154 5.28583 5.43037 5.46106 5.50730 5.58176 5.64530 5.70574 5.76531 5.78754 5.86845 5.90922 6.00928 6.02422 6.19322 6.22059 6.32168 6.37127 6.41391 6.43956 6.70086 6.76320 6.79286 7.21834 7.35284 7.64842 7.76113 8.34761 8.49543 8.96637 9.55090 11.06052 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.002214 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.842275 B =12642.014004 C =12875.402968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C -0.101 4.101 4 H 0.090 0.910 5 C -0.066 4.066 6 C -0.071 4.071 7 C -0.123 4.123 8 C -0.115 4.115 9 C -0.127 4.127 10 C -0.087 4.087 11 C -0.115 4.115 12 C -0.115 4.115 13 C 0.515 3.485 14 O -0.543 6.543 15 N -0.726 5.726 16 C 0.114 3.886 17 C -0.113 4.113 18 C -0.011 4.011 19 C -0.522 4.522 20 H 0.072 0.928 21 C 0.066 3.934 22 N -0.903 5.903 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.265 1.265 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.123 0.877 41 H 0.399 0.601 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.018 0.982 47 H 0.014 0.986 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -8.152 30.076 31.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.152 4.152 3 C -0.122 4.122 4 H 0.108 0.892 5 C -0.104 4.104 6 C -0.071 4.071 7 C -0.141 4.141 8 C -0.133 4.133 9 C -0.145 4.145 10 C -0.087 4.087 11 C -0.172 4.172 12 C -0.133 4.133 13 C 0.301 3.699 14 O -0.420 6.420 15 N -0.377 5.377 16 C -0.009 4.009 17 C -0.151 4.151 18 C -0.049 4.049 19 C -0.560 4.560 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.542 5.542 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.141 0.859 41 H 0.233 0.767 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.195 -7.651 29.909 30.950 hybrid contribution -0.188 0.351 -0.398 0.563 sum -2.384 -7.301 29.511 30.494 Atomic orbital electron populations 1.21910 0.95196 1.01653 1.02831 1.21497 0.96907 0.93799 1.02965 1.21310 1.01532 0.96465 0.92897 0.89194 1.20479 1.01551 0.98823 0.89524 1.19866 0.94884 0.95942 0.96457 1.21081 0.95505 1.00456 0.97037 1.21118 0.99800 0.96344 0.95999 1.21011 0.95485 0.97736 1.00310 1.19922 0.95283 0.97505 0.95984 1.20799 1.00302 0.95740 1.00338 1.21007 1.00170 0.96427 0.95712 1.20520 0.84309 0.80782 0.84313 1.90686 1.24841 1.41533 1.84985 1.46217 1.25284 1.56904 1.09249 1.21639 0.97764 0.97824 0.83674 1.21701 0.98076 1.01429 0.93901 1.19502 0.96926 0.95574 0.92909 1.21096 1.07334 1.35549 0.92022 0.91016 1.25032 0.96743 0.95782 0.95958 1.69905 1.37209 1.46327 1.00714 0.86775 0.84426 0.80680 0.77414 1.20241 1.21358 1.18918 0.91814 0.92347 0.92723 0.90502 0.91398 0.90594 0.89430 0.86093 0.86162 0.86368 0.91235 0.91485 0.91618 0.85917 0.76697 0.91931 0.91817 0.92144 0.92129 0.96346 0.96765 0.92692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.14 37.16 0.34 -1.22 16 2 C -0.11 -1.03 5.33 -26.73 -0.14 -1.17 16 3 C -0.10 -1.00 2.49 -91.77 -0.23 -1.23 16 4 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.07 -0.66 4.11 -27.89 -0.11 -0.77 16 6 C -0.07 -0.65 4.71 -104.62 -0.49 -1.14 16 7 C -0.12 -1.06 9.70 -39.59 -0.38 -1.44 16 8 C -0.11 -0.90 10.05 -39.59 -0.40 -1.30 16 9 C -0.13 -0.98 9.70 -39.58 -0.38 -1.36 16 10 C -0.09 -0.69 5.88 -104.62 -0.62 -1.30 16 11 C -0.12 -0.66 10.01 36.01 0.36 -0.30 16 12 C -0.12 -0.98 7.60 -39.58 -0.30 -1.28 16 13 C 0.51 6.99 5.90 -10.98 -0.06 6.92 16 14 O -0.54 -9.32 15.38 5.56 0.09 -9.23 16 15 N -0.73 -9.74 5.55 -60.29 -0.33 -10.07 16 16 C 0.11 1.87 5.68 -4.04 -0.02 1.85 16 17 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 18 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 19 C -0.52 -14.71 9.66 -34.44 -0.33 -15.04 16 20 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 23 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 27 H 0.06 0.80 6.46 -51.93 -0.34 0.46 16 28 H 0.06 0.54 5.45 -51.93 -0.28 0.25 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.63 6.18 -51.93 -0.32 0.31 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.09 0.94 6.16 -51.92 -0.32 0.62 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 39 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 40 H 0.12 0.95 6.76 -52.49 -0.35 0.59 16 41 H 0.40 4.35 8.48 -40.82 -0.35 4.01 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 47 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 48 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -32.50 381.96 -9.74 -42.25 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -8.22 Total: 0.74 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -3.13 Total: -19.59 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.44 Total: -37.03 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.50 -9.74 -42.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874371748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.657 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds