Wall clock time and date at job start Tue Mar 31 2020 11:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46837 * 2 1 4 4 H 1.08998 * 109.47198 * 181.49775 * 3 2 1 5 5 C 1.52996 * 109.47222 * 61.49726 * 3 2 1 6 6 C 1.50699 * 109.47410 * 64.99638 * 5 3 2 7 7 C 1.38257 * 119.99899 * 89.99787 * 6 5 3 8 8 C 1.38207 * 120.00248 * 179.97438 * 7 6 5 9 9 C 1.38258 * 120.00125 * 359.97438 * 8 7 6 10 10 C 1.38214 * 119.99664 * 0.02562 * 9 8 7 11 11 C 1.50704 * 120.00027 * 179.97438 * 10 9 8 12 12 C 1.38217 * 120.00318 * 269.73138 * 6 5 3 13 13 C 1.50700 * 109.47259 * 301.49690 * 3 2 1 14 14 O 1.21282 * 120.00142 * 94.17982 * 13 3 2 15 15 N 1.34778 * 119.99969 * 274.18491 * 13 3 2 16 16 C 1.46493 * 120.00184 * 175.73275 * 15 13 3 17 17 C 1.53001 * 109.47579 * 179.97438 * 16 15 13 18 18 C 1.52993 * 109.47435 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47307 * 180.02562 * 18 17 16 20 20 H 1.08005 * 120.00147 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00603 * 180.02562 * 19 18 17 22 22 N 1.31506 * 120.00576 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99420 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46991 * 90.00503 * 23 21 19 25 25 H 1.48501 * 109.46891 * 210.00000 * 23 21 19 26 26 H 1.48498 * 109.47508 * 330.00100 * 23 21 19 27 27 H 1.08994 * 109.47296 * 54.82882 * 1 2 3 28 28 H 1.09001 * 109.46944 * 294.82406 * 1 2 3 29 29 H 1.09000 * 109.46595 * 174.82673 * 1 2 3 30 30 H 1.08994 * 109.47377 * 120.00100 * 2 1 3 31 31 H 1.08993 * 109.47331 * 240.00152 * 2 1 3 32 32 H 1.09000 * 109.47347 * 184.99843 * 5 3 2 33 33 H 1.09008 * 109.47279 * 304.99784 * 5 3 2 34 34 H 1.08004 * 120.00199 * 0.02562 * 7 6 5 35 35 H 1.08006 * 120.00218 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.00325 * 180.02562 * 9 8 7 37 37 H 1.08994 * 109.47017 * 89.99692 * 11 10 9 38 38 H 1.08998 * 109.46898 * 210.00232 * 11 10 9 39 39 H 1.09005 * 109.46871 * 329.99962 * 11 10 9 40 40 H 1.07998 * 119.99812 * 359.97438 * 12 6 5 41 41 H 0.96999 * 119.99763 * 355.72853 * 15 13 3 42 42 H 1.09003 * 109.47103 * 299.99492 * 16 15 13 43 43 H 1.09004 * 109.47418 * 59.99527 * 16 15 13 44 44 H 1.09003 * 109.46718 * 300.00008 * 17 16 15 45 45 H 1.09004 * 109.46903 * 59.99491 * 17 16 15 46 46 H 1.09003 * 109.47299 * 299.99804 * 18 17 16 47 47 H 1.08997 * 109.47517 * 60.00271 * 18 17 16 48 48 H 0.96998 * 120.00682 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 -0.0269 5 6 1.5609 2.1528 1.2676 6 6 2.1917 1.5069 2.4743 7 6 3.4042 1.9695 2.9513 8 6 3.9825 1.3775 4.0583 9 6 3.3484 0.3231 4.6889 10 6 2.1363 -0.1392 4.2120 11 6 1.4453 -1.2889 4.8990 12 6 1.5556 0.4558 3.1073 13 6 1.5075 2.1636 -1.2115 14 8 0.4878 2.8150 -1.1299 15 7 2.1645 2.0844 -2.3856 16 6 1.5988 2.7070 -3.5850 17 6 2.5357 2.4725 -4.7716 18 6 1.9446 3.1222 -6.0243 19 6 2.8671 2.8907 -7.1932 20 1 3.7833 2.3353 -7.0565 21 6 2.5417 3.3879 -8.4374 22 7 3.3470 3.1863 -9.4574 23 14 0.9568 4.3478 -8.6742 24 1 1.2127 5.7915 -8.4386 25 1 0.4624 4.1527 -10.0608 26 1 -0.0645 3.8625 -7.7116 27 1 -0.3633 0.5919 -0.8400 28 1 -0.3633 0.4315 0.9327 29 1 -0.3632 -1.0235 -0.0927 30 1 1.8934 -0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8482 3.2034 1.2261 33 1 0.4760 2.0754 1.3396 34 1 3.8990 2.7939 2.4595 35 1 4.9294 1.7391 4.4312 36 1 3.8000 -0.1392 5.5541 37 1 0.7855 -0.9040 5.6764 38 1 0.8598 -1.8489 4.1698 39 1 2.1910 -1.9453 5.3475 40 1 0.6063 0.0975 2.7375 41 1 3.0120 1.6152 -2.4364 42 1 0.6249 2.2664 -3.7981 43 1 1.4845 3.7782 -3.4188 44 1 3.5095 2.9134 -4.5583 45 1 2.6504 1.4014 -4.9379 46 1 0.9710 2.6809 -6.2375 47 1 1.8297 4.1933 -5.8584 48 1 3.1179 3.5357 -10.3327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874371748.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:43 Heat of formation + Delta-G solvation = -71.874951 kcal Electronic energy + Delta-G solvation = -24007.124453 eV Core-core repulsion = 20638.458715 eV Total energy + Delta-G solvation = -3368.665738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33154 -40.16447 -37.27144 -36.45426 -35.14086 -33.79541 -33.25583 -32.25519 -30.10232 -28.88203 -27.65555 -26.21447 -24.67115 -23.25780 -22.82671 -22.23366 -21.41503 -20.13951 -18.95050 -17.93226 -17.24071 -17.04408 -16.92128 -16.51298 -16.19615 -15.89788 -15.71030 -15.28477 -14.79817 -14.71101 -14.55107 -14.22815 -14.03927 -13.81383 -13.69078 -13.58300 -13.49630 -13.21643 -12.87182 -12.74134 -12.71786 -12.70069 -12.31859 -11.95037 -11.90631 -11.81361 -11.76704 -11.74927 -11.60307 -11.52142 -11.34039 -10.77176 -10.66352 -10.05904 -9.62445 -9.43032 -8.30149 -6.34012 0.46880 0.53290 1.35955 1.37506 1.49305 1.65970 2.23687 2.35398 2.88712 3.05386 3.61604 3.78286 3.89429 4.03292 4.04343 4.11246 4.12630 4.19687 4.30769 4.37442 4.44907 4.50052 4.51861 4.57789 4.64381 4.73343 4.84107 4.86477 4.87999 4.91908 4.96304 5.01057 5.03072 5.05943 5.14647 5.16076 5.26763 5.36263 5.40760 5.43944 5.51427 5.54659 5.63192 5.64366 5.74845 5.78233 6.18579 6.26593 6.59828 6.74042 7.27774 7.30760 8.86144 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.031780 B = 0.002214 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.842275 B =12642.014004 C =12875.402968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.091 4.091 4 H 0.110 0.890 5 C -0.060 4.060 6 C -0.080 4.080 7 C -0.135 4.135 8 C -0.120 4.120 9 C -0.134 4.134 10 C -0.094 4.094 11 C -0.115 4.115 12 C -0.124 4.124 13 C 0.515 3.485 14 O -0.581 6.581 15 N -0.719 5.719 16 C 0.127 3.873 17 C -0.100 4.100 18 C -0.012 4.012 19 C -0.530 4.530 20 H 0.038 0.962 21 C 0.004 3.996 22 N -0.949 5.949 23 Si 0.947 3.053 24 H -0.268 1.268 25 H -0.284 1.284 26 H -0.249 1.249 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.127 0.873 41 H 0.413 0.587 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.020 0.980 47 H 0.019 0.981 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -8.717 32.175 33.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C -0.113 4.113 4 H 0.128 0.872 5 C -0.097 4.097 6 C -0.080 4.080 7 C -0.153 4.153 8 C -0.138 4.138 9 C -0.152 4.152 10 C -0.094 4.094 11 C -0.171 4.171 12 C -0.142 4.142 13 C 0.302 3.698 14 O -0.461 6.461 15 N -0.371 5.371 16 C 0.003 3.997 17 C -0.138 4.138 18 C -0.050 4.050 19 C -0.568 4.568 20 H 0.056 0.944 21 C -0.193 4.193 22 N -0.590 5.590 23 Si 0.771 3.229 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.172 1.172 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.145 0.855 41 H 0.250 0.750 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.038 0.962 47 H 0.037 0.963 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.553 -8.238 32.032 33.173 hybrid contribution 0.006 0.481 -1.005 1.114 sum -2.547 -7.757 31.027 32.083 Atomic orbital electron populations 1.21879 0.95883 1.01868 1.01737 1.21496 0.96214 0.93080 1.03861 1.21311 1.02524 0.96482 0.90955 0.87193 1.20366 1.00862 0.98447 0.90072 1.19792 0.95318 0.96469 0.96393 1.21241 0.95562 1.00884 0.97588 1.21378 1.00481 0.96285 0.95675 1.21313 0.95450 0.97625 1.00764 1.20211 0.95489 0.97946 0.95781 1.20837 1.00597 0.95208 1.00475 1.21120 1.00435 0.96508 0.96151 1.21136 0.83579 0.80113 0.84928 1.90670 1.26574 1.43233 1.85580 1.46076 1.25854 1.56721 1.08425 1.21268 0.96891 0.97528 0.84003 1.21475 0.98329 1.01188 0.92785 1.19468 0.96080 0.96288 0.93196 1.21460 1.06955 1.34543 0.93881 0.94399 1.25989 1.00529 0.97089 0.95698 1.70050 1.39514 1.48025 1.01404 0.85699 0.80135 0.79347 0.77737 1.19266 1.20963 1.17215 0.94705 0.92007 0.91452 0.89091 0.90887 0.91504 0.90644 0.85512 0.84484 0.84593 0.90671 0.91072 0.90578 0.85533 0.75030 0.92639 0.92638 0.91779 0.91719 0.96157 0.96310 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.14 71.98 0.66 -2.28 16 2 C -0.11 -1.78 5.33 30.60 0.16 -1.61 16 3 C -0.09 -1.70 2.49 -11.54 -0.03 -1.73 16 4 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 5 C -0.06 -1.15 4.11 29.85 0.12 -1.02 16 6 C -0.08 -1.34 4.71 -19.87 -0.09 -1.44 16 7 C -0.13 -2.12 9.70 22.27 0.22 -1.90 16 8 C -0.12 -1.65 10.05 22.27 0.22 -1.43 16 9 C -0.13 -1.76 9.70 22.27 0.22 -1.54 16 10 C -0.09 -1.30 5.88 -19.86 -0.12 -1.42 16 11 C -0.11 -1.06 10.01 71.24 0.71 -0.34 16 12 C -0.12 -1.93 7.60 22.27 0.17 -1.76 16 13 C 0.51 13.52 5.90 87.66 0.52 14.04 16 14 O -0.58 -19.91 15.38 -3.04 -0.05 -19.95 16 15 N -0.72 -18.33 5.55 -463.06 -2.57 -20.90 16 16 C 0.13 4.04 5.68 86.38 0.49 4.53 16 17 C -0.10 -3.61 5.27 30.59 0.16 -3.45 16 18 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 19 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 20 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 21 C 0.00 0.23 5.47 84.66 0.46 0.69 16 22 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 23 Si 0.95 44.58 27.47 68.60 1.88 46.46 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 26 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 27 H 0.03 0.86 6.46 -2.39 -0.02 0.84 16 28 H 0.06 1.09 5.45 -2.39 -0.01 1.08 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.28 6.18 -2.39 -0.01 1.27 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 33 H 0.08 1.62 6.16 -2.38 -0.01 1.60 16 34 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 39 H 0.08 0.54 8.09 -2.38 -0.02 0.52 16 40 H 0.13 1.78 6.76 -2.91 -0.02 1.76 16 41 H 0.41 8.21 8.48 -92.71 -0.79 7.42 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.25 16 45 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 46 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 47 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 48 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -70.51 381.96 3.90 -66.61 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.09 Total: 17.93 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 4.24 Total: -31.06 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -2.27 Total: -79.99 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -70.51 3.90 -66.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874371748.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.265 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds