Wall clock time and date at job start Tue Mar 31 2020 09:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46823 * 2 1 4 4 C 1.53003 * 109.47510 * 119.99885 * 2 1 3 5 5 H 1.09003 * 109.46833 * 53.63077 * 4 2 1 6 6 N 1.46894 * 109.46891 * 173.63362 * 4 2 1 7 7 C 1.46902 * 110.99927 * 274.99485 * 6 4 2 8 8 C 1.53002 * 109.47193 * 183.46459 * 7 6 4 9 9 C 1.50703 * 115.54971 * 30.29447 * 8 7 6 10 10 H 1.07991 * 120.00192 * 273.58069 * 9 8 7 11 11 C 1.37884 * 119.99553 * 93.57637 * 9 8 7 12 12 N 1.31509 * 120.00015 * 352.91388 * 11 9 8 13 13 Si 1.86798 * 119.99569 * 172.92269 * 11 9 8 14 14 H 1.48491 * 109.47618 * 59.99791 * 13 11 9 15 15 H 1.48510 * 109.46956 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46884 * 299.99349 * 13 11 9 17 17 C 1.53000 * 117.50224 * 244.59136 * 8 7 6 18 18 C 1.52996 * 117.50030 * 175.96383 * 8 7 6 19 19 C 1.52996 * 109.46946 * 293.63197 * 4 2 1 20 20 H 1.08997 * 109.47649 * 304.08042 * 19 4 2 21 21 O 1.42902 * 109.47105 * 64.08055 * 19 4 2 22 22 C 1.50698 * 109.47093 * 184.07684 * 19 4 2 23 23 C 1.38230 * 120.00138 * 281.06037 * 22 19 4 24 24 C 1.38236 * 120.00366 * 179.78485 * 23 22 19 25 25 C 1.38242 * 119.99685 * 0.44245 * 24 23 22 26 26 C 1.38232 * 119.99738 * 359.81213 * 25 24 23 27 27 C 1.38235 * 120.00346 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47378 * 70.06136 * 1 2 3 29 29 H 1.09001 * 109.46460 * 190.06073 * 1 2 3 30 30 H 1.09000 * 109.47248 * 310.05576 * 1 2 3 31 31 H 1.09000 * 109.47569 * 240.00383 * 2 1 3 32 32 H 1.09004 * 109.47066 * 184.78635 * 3 2 1 33 33 H 1.08997 * 109.47240 * 304.78527 * 3 2 1 34 34 H 1.08999 * 109.46873 * 64.78942 * 3 2 1 35 35 H 1.00897 * 111.00526 * 38.95397 * 6 4 2 36 36 H 1.09005 * 109.46709 * 63.47557 * 7 6 4 37 37 H 1.08988 * 109.47562 * 303.46733 * 7 6 4 38 38 H 0.97003 * 119.99886 * 180.02562 * 12 11 9 39 39 H 1.09006 * 117.49700 * 359.97438 * 17 8 7 40 40 H 1.08997 * 117.50364 * 145.02190 * 17 8 7 41 41 H 1.08999 * 117.50008 * 214.97825 * 18 8 7 42 42 H 1.09002 * 117.49546 * 359.97438 * 18 8 7 43 43 H 0.96700 * 114.00432 * 64.50989 * 21 19 4 44 44 H 1.08004 * 120.00418 * 359.97438 * 23 22 19 45 45 H 1.07998 * 120.00908 * 180.27506 * 24 23 22 46 46 H 1.08001 * 120.00322 * 179.83194 * 25 24 23 47 47 H 1.08004 * 120.00127 * 180.02562 * 26 25 24 48 48 H 1.07999 * 120.00359 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.5866 -1.7107 1.3081 6 7 3.5010 -0.8556 1.1748 7 6 3.8814 -2.0490 0.4074 8 6 5.4036 -2.2027 0.4248 9 6 6.0959 -1.6782 1.6564 10 1 6.3813 -0.6383 1.7138 11 6 6.3646 -2.5262 2.7099 12 7 5.8959 -3.7549 2.7011 13 14 7.3944 -1.9296 4.1497 14 1 6.7273 -0.7660 4.7869 15 1 7.5373 -3.0241 5.1432 16 1 8.7378 -1.5248 3.6632 17 6 6.1419 -2.0752 -0.9093 18 6 5.9959 -3.4451 -0.2434 19 6 1.6649 0.0865 2.4933 20 1 2.0574 1.0992 2.4011 21 8 0.2422 0.1366 2.6176 22 6 2.2530 -0.5709 3.7152 23 6 1.6387 -1.6795 4.2668 24 6 2.1806 -2.2853 5.3850 25 6 3.3318 -1.7767 5.9571 26 6 3.9431 -0.6649 5.4085 27 6 3.4037 -0.0618 4.2877 28 1 -0.3634 0.3504 -0.9660 29 1 -0.3632 -1.0119 0.1795 30 1 -0.3634 0.6613 0.7866 31 1 1.8934 -0.5138 -0.8900 32 1 3.1266 1.4438 -0.0858 33 1 1.6083 1.9805 -0.8440 34 1 1.7483 1.9310 0.9298 35 1 3.9211 -0.0255 0.7843 36 1 3.5387 -1.9436 -0.6220 37 1 3.4222 -2.9304 0.8548 38 1 6.0847 -4.3513 3.4425 39 1 5.5430 -1.8823 -1.7994 40 1 7.1284 -1.6119 -0.8964 41 1 6.8865 -3.8829 0.2075 42 1 5.3011 -4.1532 -0.6950 43 1 -0.1696 -0.7244 2.7729 44 1 0.7371 -2.0745 3.8224 45 1 1.7032 -3.1541 5.8135 46 1 3.7537 -2.2482 6.8323 47 1 4.8428 -0.2678 5.8551 48 1 3.8811 0.8071 3.8594 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878596501.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:29 Heat of formation + Delta-G solvation = -14.991107 kcal Electronic energy + Delta-G solvation = -26810.470638 eV Core-core repulsion = 23444.271568 eV Total energy + Delta-G solvation = -3366.199070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.87895 -39.12647 -38.24793 -36.34742 -33.85564 -33.62877 -32.19705 -31.58603 -28.69143 -28.00012 -27.29230 -25.64868 -24.13287 -23.29080 -22.82728 -22.11885 -20.88246 -20.44183 -18.43778 -17.96577 -17.00888 -16.69110 -16.54070 -16.40999 -15.81989 -15.48071 -15.35058 -15.21119 -14.67566 -14.58208 -14.16513 -13.89835 -13.84328 -13.55423 -13.45271 -13.37402 -13.17943 -12.84616 -12.74198 -12.63117 -12.37901 -12.33566 -12.21726 -12.02581 -11.90731 -11.79924 -11.65766 -11.36863 -11.18965 -10.67629 -10.56435 -10.19674 -9.80369 -9.60485 -9.38988 -8.74882 -7.89500 -5.91399 0.63372 0.71587 1.45121 1.46471 1.50590 2.56065 3.02060 3.27098 3.40854 3.61377 3.75053 3.90044 3.99219 4.12605 4.18331 4.23285 4.26991 4.34522 4.44412 4.48606 4.52746 4.60809 4.72906 4.75229 4.80079 4.86332 4.90024 4.94951 5.04260 5.08070 5.11162 5.15907 5.22340 5.26245 5.31709 5.32396 5.34700 5.48205 5.68534 5.68978 5.71930 5.72441 5.76742 5.87367 5.95858 6.29646 6.46134 6.66482 6.79826 6.92570 7.07792 7.72048 9.18949 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011131 B = 0.007876 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.856905 B = 3554.250004 C = 5255.332778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.147 4.147 4 C 0.074 3.926 5 H 0.061 0.939 6 N -0.650 5.650 7 C 0.130 3.870 8 C 0.026 3.974 9 C -0.455 4.455 10 H 0.046 0.954 11 C 0.045 3.955 12 N -0.903 5.903 13 Si 0.913 3.087 14 H -0.256 1.256 15 H -0.300 1.300 16 H -0.288 1.288 17 C -0.197 4.197 18 C -0.160 4.160 19 C 0.169 3.831 20 H 0.107 0.893 21 O -0.551 6.551 22 C -0.086 4.086 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.091 4.091 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.336 0.664 36 H 0.008 0.992 37 H 0.031 0.969 38 H 0.247 0.753 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.380 0.620 44 H 0.134 0.866 45 H 0.133 0.867 46 H 0.121 0.879 47 H 0.109 0.891 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 7.027 -0.716 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.137 4.137 3 C -0.205 4.205 4 C -0.037 4.037 5 H 0.079 0.921 6 N -0.281 5.281 7 C 0.001 3.999 8 C 0.025 3.975 9 C -0.494 4.494 10 H 0.064 0.936 11 C -0.154 4.154 12 N -0.543 5.543 13 Si 0.742 3.258 14 H -0.180 1.180 15 H -0.226 1.226 16 H -0.214 1.214 17 C -0.235 4.235 18 C -0.198 4.198 19 C 0.109 3.891 20 H 0.124 0.876 21 O -0.357 6.357 22 C -0.087 4.087 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.158 4.158 26 C -0.152 4.152 27 C -0.110 4.110 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.026 0.974 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.230 0.770 44 H 0.152 0.848 45 H 0.151 0.849 46 H 0.139 0.861 47 H 0.127 0.873 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.471 7.184 -0.074 13.535 hybrid contribution 1.051 -0.777 0.096 1.310 sum -10.420 6.408 0.022 12.233 Atomic orbital electron populations 1.21921 0.93544 1.02249 1.02133 1.21677 0.97725 0.96869 0.97386 1.21892 1.00494 0.95579 1.02488 1.22216 0.89299 0.97987 0.94163 0.92103 1.60145 1.05919 1.04970 1.57028 1.21124 0.94926 0.91882 0.91986 1.19062 0.90823 0.97184 0.90408 1.20136 1.35646 0.94320 0.99252 0.93596 1.25187 0.96303 0.95026 0.98905 1.70109 1.45702 1.06895 1.31552 0.86339 0.79709 0.78459 0.81335 1.18012 1.22644 1.21445 1.23140 1.01876 1.01008 0.97433 1.22292 1.02183 0.90696 1.04657 1.20667 0.80119 0.98977 0.89289 0.87570 1.86560 1.18385 1.36287 1.94485 1.20365 0.95734 0.96191 0.96383 1.20996 1.00817 0.95825 0.96714 1.21212 0.96450 0.99955 0.96898 1.21214 0.96803 0.96837 1.00961 1.21186 0.99270 0.97231 0.97510 1.20851 0.95255 1.00162 0.94697 0.93312 0.93316 0.89844 0.92940 0.93309 0.91813 0.91740 0.84436 0.97395 0.95019 0.94413 0.89677 0.90941 0.92649 0.91633 0.77001 0.84777 0.84873 0.86067 0.87315 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.26 71.98 0.59 -2.35 16 2 C -0.12 -2.85 2.78 -10.79 -0.03 -2.88 16 3 C -0.15 -3.32 8.54 71.98 0.61 -2.71 16 4 C 0.07 2.15 1.71 44.92 0.08 2.22 16 5 H 0.06 1.90 7.69 -2.39 -0.02 1.88 16 6 N -0.65 -23.43 4.76 -491.58 -2.34 -25.77 16 7 C 0.13 5.39 5.66 86.30 0.49 5.88 16 8 C 0.03 1.21 1.94 -52.93 -0.10 1.10 16 9 C -0.46 -23.61 7.99 25.60 0.20 -23.40 16 10 H 0.05 2.41 7.82 -2.92 -0.02 2.39 16 11 C 0.05 2.44 5.34 84.66 0.45 2.89 16 12 N -0.90 -51.43 12.47 21.45 0.27 -51.16 16 13 Si 0.91 43.66 29.54 68.60 2.03 45.69 16 14 H -0.26 -11.53 6.35 99.48 0.63 -10.90 16 15 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 16 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 17 C -0.20 -8.24 9.88 30.60 0.30 -7.93 16 18 C -0.16 -7.54 9.00 30.59 0.28 -7.26 16 19 C 0.17 4.57 2.58 29.85 0.08 4.65 16 20 H 0.11 2.89 5.83 -2.39 -0.01 2.88 16 21 O -0.55 -12.61 9.96 -148.98 -1.48 -14.09 16 22 C -0.09 -2.77 4.46 -19.87 -0.09 -2.86 16 23 C -0.13 -3.84 9.28 22.27 0.21 -3.63 16 24 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 25 C -0.14 -4.85 10.05 22.27 0.22 -4.62 16 26 C -0.13 -4.93 9.94 22.27 0.22 -4.71 16 27 C -0.09 -3.26 9.63 22.27 0.21 -3.05 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.98 8.07 -2.39 -0.02 0.96 16 30 H 0.08 1.75 5.89 -2.39 -0.01 1.74 16 31 H 0.05 1.42 7.38 -2.39 -0.02 1.40 16 32 H 0.05 1.17 6.67 -2.38 -0.02 1.15 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.43 5.96 -2.39 -0.01 1.41 16 35 H 0.34 11.83 6.76 -89.70 -0.61 11.23 16 36 H 0.01 0.31 7.16 -2.38 -0.02 0.29 16 37 H 0.03 1.48 7.97 -2.39 -0.02 1.46 16 38 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 39 H 0.08 3.10 8.03 -2.38 -0.02 3.08 16 40 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.05 2.89 8.03 -2.39 -0.02 2.87 16 42 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 43 H 0.38 6.86 7.38 -74.06 -0.55 6.31 16 44 H 0.13 3.23 6.76 -2.91 -0.02 3.21 16 45 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 46 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 47 H 0.11 3.91 7.41 -2.91 -0.02 3.89 16 48 H 0.12 3.95 8.03 -2.91 -0.02 3.93 16 Total: -1.00 -59.28 374.25 2.15 -57.13 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: -0.28 Total: 40.70 kcal Atomic # 6 Polarization: -56.44 SS G_CDS: 3.95 Total: -52.49 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -2.07 Total: -76.93 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.48 Total: -14.09 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -59.28 2.15 -57.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878596501.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.135 kcal (2) G-P(sol) polarization free energy of solvation -59.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds