Wall clock time and date at job start Tue Mar 31 2020 09:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00656 * 2 1 4 4 C 1.50703 * 109.46928 * 124.99544 * 3 2 1 5 5 C 1.38161 * 120.03264 * 264.99808 * 4 3 2 6 6 C 1.38237 * 120.06118 * 180.02562 * 5 4 3 7 7 C 1.38295 * 120.11044 * 359.97438 * 6 5 4 8 8 C 1.38119 * 120.05285 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.02845 * 180.02562 * 8 7 6 10 10 N 1.46891 * 109.47458 * 254.50674 * 9 8 7 11 11 C 1.46902 * 111.00178 * 197.22883 * 10 9 8 12 12 C 1.50700 * 109.46862 * 75.59085 * 11 10 9 13 13 H 1.08000 * 120.00077 * 3.41881 * 12 11 10 14 14 C 1.37876 * 120.00083 * 183.42061 * 12 11 10 15 15 N 1.31517 * 120.00042 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99924 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.47123 * 90.00080 * 16 14 12 18 18 H 1.48502 * 109.47524 * 209.99870 * 16 14 12 19 19 H 1.48501 * 109.47448 * 330.00454 * 16 14 12 20 20 C 1.46903 * 110.99910 * 73.27586 * 10 9 8 21 21 C 1.53006 * 109.47237 * 189.99842 * 20 10 9 22 22 C 1.52997 * 109.47076 * 180.02562 * 21 20 10 23 23 C 1.52996 * 109.47156 * 180.02562 * 22 21 20 24 24 C 1.38710 * 120.02463 * 84.98599 * 4 3 2 25 25 O 1.35896 * 120.05855 * 0.03550 * 24 4 3 26 26 H 1.08006 * 119.99485 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.00348 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99485 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.46902 * 5.00362 * 3 2 1 30 30 H 1.08996 * 109.47383 * 245.00033 * 3 2 1 31 31 H 1.08008 * 119.96886 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.94755 * 179.70380 * 6 5 4 33 33 H 1.07995 * 119.97251 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.46976 * 14.50774 * 9 8 7 35 35 H 1.09000 * 109.47373 * 134.50577 * 9 8 7 36 36 H 1.09004 * 109.46803 * 195.58274 * 11 10 9 37 37 H 1.08993 * 109.47442 * 315.58871 * 11 10 9 38 38 H 0.96997 * 119.99838 * 179.97438 * 15 14 12 39 39 H 1.08991 * 109.47517 * 310.00255 * 20 10 9 40 40 H 1.09007 * 109.46813 * 70.00387 * 20 10 9 41 41 H 1.09002 * 109.47016 * 300.00128 * 21 20 10 42 42 H 1.08995 * 109.47012 * 60.00215 * 21 20 10 43 43 H 1.09005 * 109.47532 * 300.00593 * 22 21 20 44 44 H 1.09003 * 109.47403 * 60.00286 * 22 21 20 45 45 H 1.09002 * 109.47237 * 180.02562 * 23 22 21 46 46 H 1.08996 * 109.47623 * 300.00613 * 23 22 21 47 47 H 1.09007 * 109.46738 * 60.00380 * 23 22 21 48 48 H 0.96706 * 114.00006 * 85.08398 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0637 1.3050 0.0000 4 6 3.0205 1.3324 1.1640 5 6 2.6462 1.9283 2.3529 6 6 3.5236 1.9543 3.4208 7 6 4.7778 1.3837 3.3023 8 6 5.1568 0.7868 2.1158 9 6 6.5234 0.1647 1.9875 10 7 7.3807 1.0309 1.1674 11 6 8.5567 0.2980 0.6796 12 6 8.1471 -0.6167 -0.4459 13 1 7.1281 -0.6100 -0.8036 14 6 9.0733 -1.4621 -1.0190 15 7 8.7158 -2.2607 -2.0009 16 14 10.8360 -1.4732 -0.4008 17 1 10.9711 -2.4697 0.6920 18 1 11.7492 -1.8337 -1.5150 19 1 11.1892 -0.1251 0.1122 20 6 7.7808 2.2324 1.9119 21 6 8.4567 3.2211 0.9596 22 6 8.8739 4.4722 1.7351 23 6 9.5492 5.4610 0.7827 24 6 4.2778 0.7592 1.0426 25 8 4.6486 0.1729 -0.1260 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5401 -0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3588 2.1315 0.0896 30 1 2.6214 1.4025 -0.9313 31 1 1.6674 2.3750 2.4479 32 1 3.2309 2.4248 4.3478 33 1 5.4616 1.4057 4.1378 34 1 6.9645 0.0493 2.9776 35 1 6.4347 -0.8126 1.5131 36 1 9.3024 1.0065 0.3188 37 1 8.9796 -0.2926 1.4921 38 1 9.3675 -2.8551 -2.4043 39 1 6.8990 2.6974 2.3525 40 1 8.4783 1.9547 2.7022 41 1 9.3386 2.7561 0.5190 42 1 7.7593 3.4988 0.1693 43 1 7.9923 4.9373 2.1761 44 1 9.5715 4.1941 2.5252 45 1 9.8469 6.3522 1.3353 46 1 10.4307 4.9962 0.3413 47 1 8.8512 5.7390 -0.0071 48 1 5.0116 0.7888 -0.7773 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138629244.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:08 Heat of formation + Delta-G solvation = -30.047638 kcal Electronic energy + Delta-G solvation = -25306.461627 eV Core-core repulsion = 21939.609657 eV Total energy + Delta-G solvation = -3366.851970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.03494 -38.78167 -37.33774 -36.15288 -35.52156 -34.51386 -32.56963 -31.06902 -30.45769 -28.82206 -27.25939 -26.14644 -24.32858 -22.97388 -22.47864 -21.64138 -21.17882 -20.57630 -19.10588 -18.80300 -17.11109 -16.91503 -16.63286 -16.23930 -16.10374 -15.93205 -15.72130 -15.29680 -14.89781 -14.58424 -14.38120 -14.36961 -14.16764 -13.90020 -13.53520 -13.36726 -13.27332 -13.02514 -12.77641 -12.69977 -12.55652 -12.45380 -12.22470 -12.01297 -11.97035 -11.82893 -11.71903 -11.62034 -11.38541 -11.27714 -11.08322 -10.71729 -10.21083 -9.54386 -9.31426 -8.99061 -8.21611 -6.21898 0.42567 0.45064 1.32538 1.33845 1.43938 1.44414 2.36177 2.73173 3.11191 3.30791 3.58476 3.83541 3.92351 4.02627 4.06672 4.18090 4.23023 4.32800 4.36144 4.38323 4.47726 4.52165 4.60953 4.64875 4.69265 4.81631 4.82097 4.88886 4.92840 4.99413 5.05125 5.06173 5.10006 5.14638 5.15110 5.23126 5.29480 5.43668 5.50382 5.57417 5.59858 5.64753 5.72430 5.77870 5.90384 6.06041 6.08489 6.41950 6.72168 6.89400 7.00560 7.40437 8.94871 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.004996 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.857741 B = 5603.656274 C = 7351.201346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C -0.043 4.043 4 C -0.120 4.120 5 C -0.105 4.105 6 C -0.125 4.125 7 C -0.111 4.111 8 C -0.109 4.109 9 C 0.111 3.889 10 N -0.525 5.525 11 C 0.170 3.830 12 C -0.500 4.500 13 H 0.052 0.948 14 C 0.008 3.992 15 N -0.949 5.949 16 Si 0.936 3.064 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.251 1.251 20 C 0.056 3.944 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.150 4.150 24 C 0.114 3.886 25 O -0.501 6.501 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.036 0.964 35 H 0.054 0.946 36 H 0.034 0.966 37 H -0.023 1.023 38 H 0.263 0.737 39 H 0.080 0.920 40 H 0.023 0.977 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.045 0.955 47 H 0.053 0.947 48 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 14.678 11.194 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.176 4.176 3 C -0.079 4.079 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.143 4.143 7 C -0.129 4.129 8 C -0.110 4.110 9 C -0.016 4.016 10 N -0.249 5.249 11 C 0.043 3.957 12 C -0.539 4.539 13 H 0.070 0.930 14 C -0.189 4.189 15 N -0.590 5.590 16 Si 0.760 3.240 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.175 1.175 20 C -0.071 4.071 21 C -0.150 4.150 22 C -0.153 4.153 23 C -0.207 4.207 24 C 0.069 3.931 25 O -0.312 6.312 26 H 0.134 0.866 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.152 0.848 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.052 0.948 37 H -0.005 1.005 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -11.006 14.184 10.930 21.018 hybrid contribution 1.795 -0.897 0.026 2.007 sum -9.211 13.287 10.955 19.530 Atomic orbital electron populations 1.23985 0.94952 1.02938 1.00272 1.22804 0.96397 0.97725 1.00679 1.19582 0.96500 0.96211 0.95648 1.20311 0.94354 0.99662 0.97698 1.21190 1.00559 0.98954 0.91549 1.21364 0.93080 1.00044 0.99817 1.21138 0.97705 0.97866 0.96235 1.20220 0.95100 1.00485 0.95178 1.20664 0.90204 0.95921 0.94825 1.61816 1.18733 1.06890 1.37456 1.20006 0.89553 0.92700 0.93399 1.21336 0.97545 1.18990 1.15994 0.93020 1.25737 1.02811 0.95085 0.95219 1.70057 1.36200 1.25887 1.26879 0.85890 0.80386 0.79557 0.78136 1.19946 1.20897 1.17460 1.22181 0.98936 0.91206 0.94807 1.21592 0.99622 0.95406 0.98365 1.21444 1.00797 0.94782 0.98256 1.21752 1.00332 0.99085 0.99559 1.18449 0.92314 0.95338 0.87046 1.84789 1.83605 1.37869 1.24970 0.86596 0.87916 0.89856 0.88449 0.91006 0.83296 0.82873 0.84836 0.94635 0.92773 0.94783 1.00491 0.92836 0.90189 0.95879 0.93723 0.92331 0.91011 0.91983 0.91283 0.93545 0.92784 0.75020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.60 14.32 67.78 0.97 -2.63 16 2 C -0.16 -3.96 9.50 25.64 0.24 -3.72 16 3 C -0.04 -1.01 5.51 29.10 0.16 -0.85 16 4 C -0.12 -3.27 5.13 -19.77 -0.10 -3.37 16 5 C -0.10 -2.29 9.68 22.25 0.22 -2.07 16 6 C -0.13 -2.64 10.04 22.28 0.22 -2.41 16 7 C -0.11 -2.88 8.96 22.25 0.20 -2.68 16 8 C -0.11 -3.65 4.73 -19.77 -0.09 -3.74 16 9 C 0.11 4.39 4.54 85.56 0.39 4.78 16 10 N -0.53 -21.26 4.36 -905.36 -3.95 -25.21 16 11 C 0.17 8.17 3.67 85.56 0.31 8.48 16 12 C -0.50 -28.86 9.06 25.60 0.23 -28.63 16 13 H 0.05 3.31 7.92 -2.91 -0.02 3.29 16 14 C 0.01 0.47 5.47 84.65 0.46 0.94 16 15 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 16 Si 0.94 44.98 27.40 68.60 1.88 46.86 16 17 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.25 -11.21 6.64 99.48 0.66 -10.55 16 20 C 0.06 1.83 4.80 86.30 0.41 2.24 16 21 C -0.11 -3.41 5.19 30.60 0.16 -3.25 16 22 C -0.11 -2.62 5.93 30.59 0.18 -2.43 16 23 C -0.15 -3.09 9.91 71.98 0.71 -2.38 16 24 C 0.11 3.89 6.65 22.51 0.15 4.04 16 25 O -0.50 -19.95 11.84 -92.38 -1.09 -21.05 16 26 H 0.12 1.73 7.84 -2.91 -0.02 1.71 16 27 H 0.10 1.83 8.06 -2.91 -0.02 1.80 16 28 H 0.08 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.10 1.75 7.70 -2.39 -0.02 1.73 16 30 H 0.07 1.84 7.69 -2.39 -0.02 1.82 16 31 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.13 2.97 8.00 -2.91 -0.02 2.95 16 34 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 35 H 0.05 2.60 7.20 -2.39 -0.02 2.59 16 36 H 0.03 1.63 5.18 -2.39 -0.01 1.62 16 37 H -0.02 -1.10 7.24 -2.39 -0.02 -1.12 16 38 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.08 2.34 6.76 -2.39 -0.02 2.32 16 40 H 0.02 0.73 8.12 -2.38 -0.02 0.72 16 41 H 0.04 1.55 6.25 -2.39 -0.01 1.53 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.39 14.55 9.06 -74.05 -0.67 13.87 16 Total: -1.00 -68.82 387.70 2.17 -66.65 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.20 Total: 30.43 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 4.83 Total: -37.69 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -3.65 Total: -85.20 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -1.09 Total: -21.05 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -68.82 2.17 -66.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138629244.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.601 kcal (2) G-P(sol) polarization free energy of solvation -68.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds