Wall clock time and date at job start Tue Mar 31 2020 09:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46763 * 2 1 4 4 C 1.53008 * 109.46876 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46960 * 185.21408 * 4 3 2 6 6 C 1.46894 * 111.00076 * 160.50841 * 5 4 3 7 7 C 1.50701 * 109.47046 * 293.10048 * 6 5 4 8 8 H 1.08006 * 120.00071 * 355.71861 * 7 6 5 9 9 C 1.37882 * 120.00136 * 175.71148 * 7 6 5 10 10 N 1.31505 * 119.99786 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99780 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47289 * 60.00614 * 11 9 7 13 13 H 1.48504 * 109.47045 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47385 * 300.00108 * 11 9 7 15 15 C 1.46901 * 111.00041 * 284.46296 * 5 4 3 16 16 H 1.08994 * 110.73174 * 51.59745 * 15 5 4 17 17 C 1.54341 * 110.99089 * 288.06806 * 15 5 4 18 18 C 1.51383 * 105.18119 * 268.07262 * 17 15 5 19 19 C 1.38550 * 130.32912 * 162.80550 * 18 17 15 20 20 C 1.37998 * 120.28893 * 180.25816 * 19 18 17 21 21 C 1.38747 * 119.88516 * 359.48771 * 20 19 18 22 22 O 1.35895 * 120.09592 * 180.23302 * 21 20 19 23 23 C 1.42894 * 117.00181 * 0.27424 * 22 21 20 24 24 C 1.38602 * 119.81210 * 0.50450 * 21 20 19 25 25 C 1.38266 * 109.73682 * 342.79816 * 18 17 15 26 26 C 1.51374 * 109.75441 * 359.97438 * 25 18 17 27 27 H 1.08998 * 109.46786 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46747 * 299.99619 * 1 2 3 29 29 H 1.09000 * 109.47498 * 59.99754 * 1 2 3 30 30 H 1.09000 * 109.47259 * 240.00836 * 2 1 3 31 31 H 1.08990 * 109.47573 * 120.00296 * 2 1 3 32 32 H 1.09006 * 109.47178 * 60.00645 * 3 2 1 33 33 H 1.09000 * 109.47314 * 300.00358 * 3 2 1 34 34 H 1.08998 * 109.46740 * 65.22180 * 4 3 2 35 35 H 1.08998 * 109.46965 * 305.21771 * 4 3 2 36 36 H 1.08998 * 109.47246 * 53.10113 * 6 5 4 37 37 H 1.09005 * 109.47347 * 173.10488 * 6 5 4 38 38 H 0.97004 * 120.00333 * 179.97438 * 10 9 7 39 39 H 1.09001 * 110.30019 * 149.14150 * 17 15 5 40 40 H 1.09001 * 110.29811 * 27.00080 * 17 15 5 41 41 H 1.08004 * 119.85445 * 359.97438 * 19 18 17 42 42 H 1.08008 * 120.05772 * 179.71944 * 20 19 18 43 43 H 1.09004 * 109.47403 * 59.99944 * 23 22 21 44 44 H 1.09002 * 109.47562 * 180.02562 * 23 22 21 45 45 H 1.09007 * 109.46998 * 300.00014 * 23 22 21 46 46 H 1.07998 * 119.91698 * 179.77104 * 24 21 20 47 47 H 1.09001 * 110.30348 * 136.12907 * 26 25 18 48 48 H 1.09002 * 110.30450 * 258.27738 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8218 0.1252 6 6 5.4542 2.8454 0.5863 7 6 5.5245 2.3288 2.0002 8 1 4.6169 2.0797 2.5300 9 6 6.7476 2.1741 2.6176 10 7 7.8528 2.4777 1.9728 11 14 6.8348 1.5331 4.3700 12 1 6.2276 0.1794 4.4328 13 1 8.2543 1.4597 4.8003 14 1 6.0920 2.4510 5.2704 15 6 3.9116 3.5507 -1.1416 16 1 2.8930 3.4645 -1.5196 17 6 4.9296 3.0515 -2.1889 18 6 6.1360 3.9520 -2.0296 19 6 7.4415 3.7870 -2.4632 20 6 8.3911 4.7518 -2.1954 21 6 8.0351 5.8974 -1.4982 22 8 8.9657 6.8525 -1.2362 23 6 10.2914 6.6149 -1.7137 24 6 6.7290 6.0623 -1.0647 25 6 5.7800 5.0903 -1.3302 26 6 4.3102 5.0323 -0.9726 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6765 1.9564 -0.8899 34 1 3.9329 1.0121 -0.9339 35 1 3.9337 0.8499 0.8387 36 1 6.0619 2.2140 -0.0619 37 1 5.8304 3.8680 0.5539 38 1 8.7133 2.3693 2.4072 39 1 4.5165 3.1467 -3.1931 40 1 5.2018 2.0154 -1.9877 41 1 7.7183 2.8971 -3.0092 42 1 9.4088 4.6173 -2.5312 43 1 10.2740 6.5128 -2.7988 44 1 10.9326 7.4519 -1.4375 45 1 10.6790 5.6984 -1.2687 46 1 6.4509 6.9516 -0.5186 47 1 4.1593 5.3487 0.0595 48 1 3.7311 5.6601 -1.6499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168274473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:31 Heat of formation + Delta-G solvation = -19.353878 kcal Electronic energy + Delta-G solvation = -25747.272105 eV Core-core repulsion = 22380.883851 eV Total energy + Delta-G solvation = -3366.388254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.27525 -38.73155 -36.51449 -34.57081 -33.03534 -31.91541 -30.94278 -28.52159 -27.99695 -27.74723 -26.03564 -25.47298 -22.87967 -22.44839 -21.11151 -20.68149 -20.28145 -18.68134 -17.22664 -16.55577 -15.98144 -15.42699 -15.21576 -15.02386 -14.73518 -14.58937 -14.12601 -13.78149 -13.65931 -13.04720 -12.93014 -12.85583 -12.67238 -12.31691 -12.02634 -11.93281 -11.60516 -11.47989 -11.37349 -11.25096 -11.06834 -10.84302 -10.75721 -10.74663 -10.62465 -10.56409 -10.28960 -10.16628 -10.07416 -9.93421 -9.55056 -9.11094 -8.37943 -8.15610 -7.48917 -7.10848 -5.91900 -3.93070 1.88057 1.97886 3.36820 3.40988 3.43893 3.57655 4.25092 4.48332 4.82566 5.02354 5.07840 5.21272 5.25867 5.32954 5.35760 5.39803 5.42131 5.44014 5.52806 5.61139 5.70922 5.76788 5.80494 5.86065 5.93663 6.04883 6.08800 6.10736 6.13831 6.15594 6.20911 6.30202 6.37145 6.50990 6.51914 6.56424 6.66939 6.78353 6.81165 6.87727 6.92501 7.21934 7.23635 7.48868 7.55172 7.82831 7.90076 8.24253 8.31432 8.67373 9.14972 9.69673 11.17274 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.005472 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.381398 B = 5115.655424 C = 7101.983425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.112 4.112 4 C 0.059 3.941 5 N -0.525 5.525 6 C 0.192 3.808 7 C -0.509 4.509 8 H 0.060 0.940 9 C 0.058 3.942 10 N -0.891 5.891 11 Si 0.891 3.109 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.085 3.915 16 H 0.083 0.917 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.065 4.065 20 C -0.204 4.204 21 C 0.125 3.875 22 O -0.321 6.321 23 C 0.031 3.969 24 C -0.137 4.137 25 C -0.042 4.042 26 C -0.074 4.074 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.020 0.980 35 H 0.084 0.916 36 H -0.004 1.004 37 H 0.040 0.960 38 H 0.259 0.741 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.055 0.945 46 H 0.122 0.878 47 H 0.088 0.912 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 2.906 -10.403 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.069 4.069 5 N -0.248 5.248 6 C 0.067 3.933 7 C -0.548 4.548 8 H 0.078 0.922 9 C -0.144 4.144 10 N -0.530 5.530 11 Si 0.719 3.281 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.203 1.203 15 C -0.025 4.025 16 H 0.101 0.899 17 C -0.148 4.148 18 C -0.115 4.115 19 C -0.083 4.083 20 C -0.223 4.223 21 C 0.080 3.920 22 O -0.235 6.235 23 C -0.065 4.065 24 C -0.156 4.156 25 C -0.042 4.042 26 C -0.112 4.112 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.038 0.962 35 H 0.103 0.897 36 H 0.014 0.986 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.068 0.932 44 H 0.112 0.888 45 H 0.074 0.926 46 H 0.140 0.860 47 H 0.107 0.893 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.342 3.333 -9.905 11.317 hybrid contribution 1.173 -1.031 0.318 1.594 sum -3.168 2.302 -9.588 10.357 Atomic orbital electron populations 1.21757 0.96459 1.00887 1.01538 1.21503 0.95168 0.97819 1.01768 1.21605 0.96348 0.95323 1.01704 1.22020 0.93493 0.91002 1.00394 1.62322 1.25589 1.13119 1.23796 1.19852 0.81308 0.97604 0.94523 1.21175 0.92218 1.42934 0.98492 0.92207 1.24949 0.95783 0.95931 0.97723 1.69976 0.97450 1.48651 1.36950 0.86686 0.76707 0.79375 0.85358 1.20420 1.21517 1.20280 1.22377 0.97096 0.93374 0.89681 0.89899 1.21670 0.94105 0.99258 0.99738 1.20311 0.94372 0.96519 1.00333 1.20221 0.91731 0.97617 0.98732 1.20886 0.99847 0.95592 1.05965 1.18666 0.89009 0.88335 0.95982 1.86005 1.18813 1.43262 1.75388 1.22960 0.81901 1.02741 0.98856 1.19626 0.90076 1.01019 1.04877 1.20232 0.95525 0.93237 0.95185 1.21127 0.90612 0.96738 1.02685 0.93359 0.92829 0.93138 0.92612 0.91984 0.91447 0.93123 0.96174 0.89746 0.98618 0.94243 0.93184 0.91326 0.90865 0.86852 0.86129 0.93163 0.88802 0.92615 0.86022 0.89324 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.11 -1.70 5.25 -26.72 -0.14 -1.84 16 4 C 0.06 1.11 4.67 -3.82 -0.02 1.10 16 5 N -0.53 -10.93 4.41 -226.39 -1.00 -11.93 16 6 C 0.19 4.91 3.21 -4.98 -0.02 4.89 16 7 C -0.51 -14.34 8.16 -34.44 -0.28 -14.62 16 8 H 0.06 1.67 7.53 -52.48 -0.40 1.28 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 11 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C 0.08 1.47 3.18 -66.30 -0.21 1.26 16 16 H 0.08 1.26 6.83 -51.93 -0.35 0.90 16 17 C -0.11 -1.87 5.56 -26.85 -0.15 -2.02 16 18 C -0.12 -2.17 4.75 -104.16 -0.49 -2.67 16 19 C -0.06 -1.19 10.03 -39.55 -0.40 -1.58 16 20 C -0.20 -3.62 9.04 -39.48 -0.36 -3.97 16 21 C 0.12 2.32 6.68 -39.26 -0.26 2.06 16 22 O -0.32 -5.47 10.50 -19.41 -0.20 -5.67 16 23 C 0.03 0.38 9.81 101.05 0.99 1.37 16 24 C -0.14 -2.62 9.98 -39.38 -0.39 -3.02 16 25 C -0.04 -0.79 4.23 -104.22 -0.44 -1.23 16 26 C -0.07 -1.27 5.85 -26.84 -0.16 -1.43 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.71 7.01 -51.93 -0.36 0.35 16 34 H 0.02 0.37 6.48 -51.93 -0.34 0.03 16 35 H 0.08 1.81 6.72 -51.93 -0.35 1.46 16 36 H 0.00 -0.11 6.68 -51.93 -0.35 -0.46 16 37 H 0.04 1.09 5.32 -51.93 -0.28 0.82 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.37 5.96 -51.93 -0.31 1.06 16 41 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.12 1.81 6.31 -52.48 -0.33 1.48 16 43 H 0.05 0.53 7.68 -51.93 -0.40 0.13 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 0.70 7.65 -51.92 -0.40 0.31 16 46 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 47 H 0.09 1.64 8.03 -51.93 -0.42 1.23 16 48 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -31.33 370.67 -10.18 -41.50 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.06 Total: 2.80 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -2.21 Total: -23.24 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.26 Total: -37.97 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.20 Total: -5.67 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.33 -10.18 -41.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168274473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.148 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds