Wall clock time and date at job start Tue Mar 31 2020 09:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46763 * 2 1 4 4 C 1.53008 * 109.46876 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46960 * 185.21408 * 4 3 2 6 6 C 1.46894 * 111.00076 * 160.50841 * 5 4 3 7 7 C 1.50701 * 109.47046 * 293.10048 * 6 5 4 8 8 H 1.08006 * 120.00071 * 355.71861 * 7 6 5 9 9 C 1.37882 * 120.00136 * 175.71148 * 7 6 5 10 10 N 1.31505 * 119.99786 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99780 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47289 * 60.00614 * 11 9 7 13 13 H 1.48504 * 109.47045 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47385 * 300.00108 * 11 9 7 15 15 C 1.46901 * 111.00041 * 284.46296 * 5 4 3 16 16 H 1.08994 * 110.73174 * 51.59745 * 15 5 4 17 17 C 1.54341 * 110.99089 * 288.06806 * 15 5 4 18 18 C 1.51383 * 105.18119 * 268.07262 * 17 15 5 19 19 C 1.38550 * 130.32912 * 162.80550 * 18 17 15 20 20 C 1.37998 * 120.28893 * 180.25816 * 19 18 17 21 21 C 1.38747 * 119.88516 * 359.48771 * 20 19 18 22 22 O 1.35895 * 120.09592 * 180.23302 * 21 20 19 23 23 C 1.42894 * 117.00181 * 0.27424 * 22 21 20 24 24 C 1.38602 * 119.81210 * 0.50450 * 21 20 19 25 25 C 1.38266 * 109.73682 * 342.79816 * 18 17 15 26 26 C 1.51374 * 109.75441 * 359.97438 * 25 18 17 27 27 H 1.08998 * 109.46786 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46747 * 299.99619 * 1 2 3 29 29 H 1.09000 * 109.47498 * 59.99754 * 1 2 3 30 30 H 1.09000 * 109.47259 * 240.00836 * 2 1 3 31 31 H 1.08990 * 109.47573 * 120.00296 * 2 1 3 32 32 H 1.09006 * 109.47178 * 60.00645 * 3 2 1 33 33 H 1.09000 * 109.47314 * 300.00358 * 3 2 1 34 34 H 1.08998 * 109.46740 * 65.22180 * 4 3 2 35 35 H 1.08998 * 109.46965 * 305.21771 * 4 3 2 36 36 H 1.08998 * 109.47246 * 53.10113 * 6 5 4 37 37 H 1.09005 * 109.47347 * 173.10488 * 6 5 4 38 38 H 0.97004 * 120.00333 * 179.97438 * 10 9 7 39 39 H 1.09001 * 110.30019 * 149.14150 * 17 15 5 40 40 H 1.09001 * 110.29811 * 27.00080 * 17 15 5 41 41 H 1.08004 * 119.85445 * 359.97438 * 19 18 17 42 42 H 1.08008 * 120.05772 * 179.71944 * 20 19 18 43 43 H 1.09004 * 109.47403 * 59.99944 * 23 22 21 44 44 H 1.09002 * 109.47562 * 180.02562 * 23 22 21 45 45 H 1.09007 * 109.46998 * 300.00014 * 23 22 21 46 46 H 1.07998 * 119.91698 * 179.77104 * 24 21 20 47 47 H 1.09001 * 110.30348 * 136.12907 * 26 25 18 48 48 H 1.09002 * 110.30450 * 258.27738 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8218 0.1252 6 6 5.4542 2.8454 0.5863 7 6 5.5245 2.3288 2.0002 8 1 4.6169 2.0797 2.5300 9 6 6.7476 2.1741 2.6176 10 7 7.8528 2.4777 1.9728 11 14 6.8348 1.5331 4.3700 12 1 6.2276 0.1794 4.4328 13 1 8.2543 1.4597 4.8003 14 1 6.0920 2.4510 5.2704 15 6 3.9116 3.5507 -1.1416 16 1 2.8930 3.4645 -1.5196 17 6 4.9296 3.0515 -2.1889 18 6 6.1360 3.9520 -2.0296 19 6 7.4415 3.7870 -2.4632 20 6 8.3911 4.7518 -2.1954 21 6 8.0351 5.8974 -1.4982 22 8 8.9657 6.8525 -1.2362 23 6 10.2914 6.6149 -1.7137 24 6 6.7290 6.0623 -1.0647 25 6 5.7800 5.0903 -1.3302 26 6 4.3102 5.0323 -0.9726 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8901 33 1 1.6765 1.9564 -0.8899 34 1 3.9329 1.0121 -0.9339 35 1 3.9337 0.8499 0.8387 36 1 6.0619 2.2140 -0.0619 37 1 5.8304 3.8680 0.5539 38 1 8.7133 2.3693 2.4072 39 1 4.5165 3.1467 -3.1931 40 1 5.2018 2.0154 -1.9877 41 1 7.7183 2.8971 -3.0092 42 1 9.4088 4.6173 -2.5312 43 1 10.2740 6.5128 -2.7988 44 1 10.9326 7.4519 -1.4375 45 1 10.6790 5.6984 -1.2687 46 1 6.4509 6.9516 -0.5186 47 1 4.1593 5.3487 0.0595 48 1 3.7311 5.6601 -1.6499 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168274473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:30 Heat of formation + Delta-G solvation = -36.974815 kcal Electronic energy + Delta-G solvation = -25748.036206 eV Core-core repulsion = 22380.883851 eV Total energy + Delta-G solvation = -3367.152355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68201 -40.09539 -37.94210 -35.78906 -34.98261 -33.54127 -32.33207 -30.08004 -29.46524 -28.97668 -27.47319 -27.01192 -24.54160 -23.88645 -22.64991 -21.89312 -21.62547 -20.20813 -18.69762 -18.42976 -17.37078 -16.80964 -16.58553 -16.48213 -16.46207 -16.00420 -15.56413 -15.26521 -15.07615 -14.35527 -14.24861 -14.19285 -14.12649 -13.76263 -13.59702 -13.23313 -13.08895 -12.92585 -12.79087 -12.64127 -12.59127 -12.51194 -12.38420 -12.17746 -11.94812 -11.91463 -11.75102 -11.60155 -11.52626 -11.39048 -11.17664 -11.05335 -10.53717 -9.62409 -8.96388 -8.74714 -8.12148 -6.21301 0.46304 0.55383 1.37487 1.40222 1.47443 2.36780 2.41128 2.83693 3.18603 3.32662 3.64131 3.71638 3.98946 4.11008 4.12786 4.24402 4.32476 4.34983 4.37606 4.39478 4.44137 4.50484 4.53766 4.60092 4.68358 4.74473 4.85623 4.89060 4.90491 4.94772 4.96654 5.08759 5.14928 5.17001 5.24637 5.27283 5.33442 5.37837 5.44756 5.48941 5.50688 5.59583 5.63409 5.72806 5.78769 5.88947 6.19373 6.49110 6.51156 6.81147 6.97706 7.46641 8.95782 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.005472 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.381398 B = 5115.655424 C = 7101.983425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.099 4.099 4 C 0.062 3.938 5 N -0.533 5.533 6 C 0.218 3.782 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.005 3.995 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.269 1.269 13 H -0.286 1.286 14 H -0.271 1.271 15 C 0.082 3.918 16 H 0.118 0.882 17 C -0.101 4.101 18 C -0.135 4.135 19 C -0.081 4.081 20 C -0.211 4.211 21 C 0.114 3.886 22 O -0.337 6.337 23 C 0.021 3.979 24 C -0.163 4.163 25 C -0.056 4.056 26 C -0.071 4.071 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.049 0.951 36 H -0.038 1.038 37 H 0.016 0.984 38 H 0.258 0.742 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.069 0.931 44 H 0.123 0.877 45 H 0.049 0.951 46 H 0.125 0.875 47 H 0.068 0.932 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 2.676 -11.181 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.137 4.137 4 C -0.066 4.066 5 N -0.255 5.255 6 C 0.092 3.908 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.193 4.193 10 N -0.565 5.565 11 Si 0.781 3.219 12 H -0.194 1.194 13 H -0.211 1.211 14 H -0.197 1.197 15 C -0.027 4.027 16 H 0.135 0.865 17 C -0.140 4.140 18 C -0.136 4.136 19 C -0.099 4.099 20 C -0.230 4.230 21 C 0.069 3.931 22 O -0.251 6.251 23 C -0.073 4.073 24 C -0.181 4.181 25 C -0.056 4.056 26 C -0.108 4.108 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.068 0.932 36 H -0.020 1.020 37 H 0.034 0.966 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.088 0.912 44 H 0.141 0.859 45 H 0.068 0.932 46 H 0.143 0.857 47 H 0.087 0.913 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.695 3.100 -10.691 12.503 hybrid contribution 1.647 -0.927 0.520 1.960 sum -4.048 2.174 -10.170 11.160 Atomic orbital electron populations 1.21715 0.94443 1.01962 1.02058 1.21484 0.96867 0.96174 1.01567 1.21497 0.93124 0.96985 1.02103 1.22007 0.96067 0.89479 0.99056 1.62253 1.22309 1.14550 1.26432 1.19323 0.83563 0.94989 0.92884 1.21539 0.92151 1.42714 0.99887 0.92631 1.25776 0.95441 0.96172 1.01899 1.70117 0.97875 1.49830 1.38673 0.85657 0.76835 0.79137 0.80320 1.19367 1.21114 1.19654 1.22575 0.98973 0.92942 0.88188 0.86451 1.21642 0.93438 0.97526 1.01370 1.20644 0.95249 0.96954 1.00711 1.20564 0.91941 0.98355 0.99027 1.21191 1.00985 0.95159 1.05625 1.18872 0.89360 0.88960 0.95941 1.85982 1.20317 1.43076 1.75763 1.23294 0.80052 1.03844 1.00110 1.19897 0.90891 1.01644 1.05699 1.20528 0.96552 0.93317 0.95192 1.21184 0.90123 0.97130 1.02345 0.92074 0.92962 0.91965 0.91898 0.93233 0.92536 0.91063 0.95755 0.93203 1.01986 0.96650 0.93285 0.87942 0.92840 0.85362 0.83765 0.91200 0.85909 0.93182 0.85725 0.91324 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.91 71.98 0.71 -2.11 16 2 C -0.12 -3.03 5.93 30.60 0.18 -2.84 16 3 C -0.10 -2.86 5.25 30.60 0.16 -2.70 16 4 C 0.06 2.34 4.67 86.31 0.40 2.74 16 5 N -0.53 -22.29 4.41 -870.17 -3.84 -26.13 16 6 C 0.22 11.57 3.21 85.56 0.27 11.85 16 7 C -0.52 -30.37 8.16 25.60 0.21 -30.16 16 8 H 0.06 3.19 7.53 -2.91 -0.02 3.16 16 9 C 0.01 0.31 5.46 84.66 0.46 0.78 16 10 N -0.92 -57.11 13.29 21.45 0.28 -56.82 16 11 Si 0.96 45.81 29.54 68.60 2.03 47.83 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 14 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 15 C 0.08 2.75 3.18 45.83 0.15 2.90 16 16 H 0.12 3.14 6.83 -2.39 -0.02 3.13 16 17 C -0.10 -3.38 5.56 30.52 0.17 -3.21 16 18 C -0.14 -5.14 4.75 -19.57 -0.09 -5.23 16 19 C -0.08 -2.99 10.03 22.29 0.22 -2.76 16 20 C -0.21 -7.53 9.04 22.33 0.20 -7.33 16 21 C 0.11 4.32 6.68 22.48 0.15 4.47 16 22 O -0.34 -11.53 10.50 -92.37 -0.97 -12.50 16 23 C 0.02 0.50 9.81 113.37 1.11 1.62 16 24 C -0.16 -6.41 9.98 22.40 0.22 -6.18 16 25 C -0.06 -2.14 4.23 -19.60 -0.08 -2.22 16 26 C -0.07 -2.37 5.85 30.52 0.18 -2.19 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.03 8.14 -2.38 -0.02 1.02 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.07 1.77 7.01 -2.39 -0.02 1.76 16 34 H 0.02 0.89 6.48 -2.39 -0.02 0.87 16 35 H 0.05 2.21 6.72 -2.39 -0.02 2.19 16 36 H -0.04 -2.21 6.68 -2.39 -0.02 -2.23 16 37 H 0.02 0.89 5.32 -2.38 -0.01 0.88 16 38 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.05 2.00 5.96 -2.39 -0.01 1.98 16 41 H 0.13 4.18 8.06 -2.91 -0.02 4.15 16 42 H 0.14 4.25 6.31 -2.91 -0.02 4.23 16 43 H 0.07 1.37 7.68 -2.38 -0.02 1.35 16 44 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 1.24 7.65 -2.38 -0.02 1.22 16 46 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 47 H 0.07 2.57 8.03 -2.39 -0.02 2.55 16 48 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -70.08 370.67 3.06 -67.01 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.93 Total: 23.21 kcal Atomic # 6 Polarization: -47.23 SS G_CDS: 4.63 Total: -42.59 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -3.55 Total: -82.96 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.97 Total: -12.50 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -70.08 3.06 -67.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168274473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.039 kcal (2) G-P(sol) polarization free energy of solvation -70.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds