Wall clock time and date at job start Tue Mar 31 2020 10:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46733 * 2 1 4 4 H 1.08993 * 109.49311 * 305.03161 * 3 2 1 5 5 C 1.53089 * 109.47835 * 184.99847 * 3 2 1 6 6 C 1.53184 * 109.16275 * 182.41064 * 5 3 2 7 7 H 1.08994 * 109.54223 * 297.02751 * 6 5 3 8 8 N 1.46901 * 109.54247 * 176.85093 * 6 5 3 9 9 C 1.46900 * 110.99753 * 298.94999 * 8 6 5 10 10 C 1.50702 * 109.46780 * 170.00396 * 9 8 6 11 11 H 1.08002 * 120.00299 * 120.00624 * 10 9 8 12 12 C 1.37884 * 119.99942 * 299.72183 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.46898 * 110.99697 * 175.00110 * 8 6 5 19 19 C 1.50705 * 109.47032 * 189.99750 * 18 8 6 20 20 C 1.38236 * 119.99848 * 269.72381 * 19 18 8 21 21 C 1.38238 * 119.99740 * 179.76392 * 20 19 18 22 22 C 1.38241 * 119.99894 * 0.51308 * 21 20 19 23 23 C 1.38239 * 119.99840 * 359.73926 * 22 21 20 24 24 C 1.38233 * 119.99691 * 90.00247 * 19 18 8 25 25 C 1.53170 * 109.03418 * 56.98159 * 6 5 3 26 26 C 1.53088 * 109.16654 * 303.01795 * 25 6 5 27 27 O 1.42903 * 109.47687 * 65.05914 * 3 2 1 28 28 H 1.08998 * 109.47596 * 299.99422 * 1 2 3 29 29 H 1.09001 * 109.47184 * 60.00199 * 1 2 3 30 30 H 1.09004 * 109.47121 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47145 * 240.00573 * 2 1 3 32 32 H 1.09001 * 109.47616 * 120.00119 * 2 1 3 33 33 H 1.08998 * 109.52450 * 62.50662 * 5 3 2 34 34 H 1.09001 * 109.57838 * 302.35106 * 5 3 2 35 35 H 1.08994 * 109.47148 * 50.00752 * 9 8 6 36 36 H 1.09001 * 109.47278 * 290.00262 * 9 8 6 37 37 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.47476 * 309.99812 * 18 8 6 39 39 H 1.08999 * 109.47626 * 70.00015 * 18 8 6 40 40 H 1.07997 * 119.99997 * 0.02562 * 20 19 18 41 41 H 1.08001 * 120.00201 * 180.23328 * 21 20 19 42 42 H 1.07994 * 119.99878 * 179.72124 * 22 21 20 43 43 H 1.08000 * 119.99570 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.00312 * 359.97438 * 24 19 18 45 45 H 1.09001 * 109.52593 * 62.92543 * 25 6 5 46 46 H 1.09001 * 109.52346 * 183.11362 * 25 6 5 47 47 H 1.08995 * 109.48486 * 297.62932 * 26 25 6 48 48 H 1.08997 * 109.49386 * 177.59396 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6050 1.9820 -0.8413 5 6 3.5656 1.4447 -0.1258 6 6 4.0732 2.8887 -0.0644 7 1 3.6802 3.4496 -0.9123 8 7 5.5415 2.8957 -0.1086 9 6 6.1061 2.1717 1.0381 10 6 7.5879 1.9868 0.8353 11 1 8.2863 2.4002 1.5479 12 6 8.0519 1.2850 -0.2571 13 7 9.3449 1.1190 -0.4312 14 14 6.8441 0.5700 -1.4896 15 1 6.5767 1.5676 -2.5566 16 1 7.4215 -0.6578 -2.0934 17 1 5.5739 0.2315 -0.7988 18 6 6.0597 4.2689 -0.1711 19 6 7.5382 4.2351 -0.4611 20 6 8.4460 4.1923 0.5805 21 6 9.8020 4.1564 0.3144 22 6 10.2505 4.1741 -0.9931 23 6 9.3427 4.2223 -2.0346 24 6 7.9866 4.2529 -1.7685 25 6 3.5967 3.5306 1.2421 26 6 2.0698 3.4480 1.3151 27 8 1.6630 2.0812 1.2216 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 3.8533 0.9976 -1.0773 34 1 4.0003 0.8707 0.6926 35 1 5.6267 1.1966 1.1239 36 1 5.9327 2.7433 1.9499 37 1 9.6713 0.6255 -1.1998 38 1 5.5466 4.8152 -0.9624 39 1 5.8880 4.7659 0.7837 40 1 8.0957 4.1825 1.6021 41 1 10.5112 4.1191 1.1281 42 1 11.3100 4.1507 -1.2009 43 1 9.6932 4.2366 -3.0560 44 1 7.2774 4.2906 -2.5822 45 1 4.0311 2.9991 2.0888 46 1 3.9066 4.5753 1.2689 47 1 1.6353 4.0136 0.4909 48 1 1.7278 3.8649 2.2623 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170204029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:36 Heat of formation + Delta-G solvation = -2.196387 kcal Electronic energy + Delta-G solvation = -26875.486975 eV Core-core repulsion = 23509.842725 eV Total energy + Delta-G solvation = -3365.644249 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.82121 -38.37280 -36.41512 -33.90129 -32.71887 -31.79671 -29.93308 -29.74512 -29.46917 -27.73730 -25.15807 -23.47832 -23.16781 -22.00248 -21.37162 -20.93636 -19.97310 -19.02832 -16.63710 -16.36567 -16.02407 -15.65973 -14.97105 -14.61751 -14.36985 -14.34798 -13.81921 -13.71788 -13.51146 -13.42898 -13.16663 -12.99608 -12.55954 -12.18585 -12.08921 -11.83311 -11.61382 -11.45677 -11.32021 -11.27231 -11.07489 -10.79184 -10.66491 -10.57584 -10.41586 -10.05408 -9.90255 -9.82820 -9.76893 -9.62005 -9.28816 -9.04086 -8.42436 -7.51937 -7.32620 -7.17247 -5.90857 -3.81971 2.68585 2.78794 3.59173 3.64564 3.73108 3.89613 4.56363 4.72544 4.92706 5.02256 5.08199 5.15830 5.20668 5.28941 5.37138 5.42720 5.53859 5.57488 5.66918 5.75441 5.81322 5.89956 5.91065 5.94630 5.97839 6.10560 6.12392 6.14955 6.18259 6.21630 6.27147 6.30942 6.35329 6.46096 6.62368 6.68906 6.80206 6.83527 6.94926 7.28923 7.31381 7.39084 7.65517 7.69629 7.79392 7.86942 7.96459 8.17485 8.34870 8.57325 8.96562 9.71237 11.13782 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021262 B = 0.005264 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.607808 B = 5317.939138 C = 5949.035201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.092 3.908 4 H 0.052 0.948 5 C -0.145 4.145 6 C 0.081 3.919 7 H 0.067 0.933 8 N -0.525 5.525 9 C 0.149 3.851 10 C -0.518 4.518 11 H 0.083 0.917 12 C 0.098 3.902 13 N -0.868 5.868 14 Si 0.906 3.094 15 H -0.279 1.279 16 H -0.325 1.325 17 H -0.260 1.260 18 C 0.112 3.888 19 C -0.054 4.054 20 C -0.009 4.009 21 C -0.129 4.129 22 C -0.093 4.093 23 C -0.151 4.151 24 C -0.115 4.115 25 C -0.188 4.188 26 C 0.069 3.931 27 O -0.381 6.381 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.002 0.998 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.028 0.972 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.044 0.956 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.643 4.641 0.109 12.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.070 0.930 5 C -0.182 4.182 6 C -0.029 4.029 7 H 0.085 0.915 8 N -0.249 5.249 9 C 0.025 3.975 10 C -0.554 4.554 11 H 0.101 0.899 12 C -0.109 4.109 13 N -0.502 5.502 14 Si 0.738 3.262 15 H -0.205 1.205 16 H -0.255 1.255 17 H -0.185 1.185 18 C -0.015 4.015 19 C -0.054 4.054 20 C -0.028 4.028 21 C -0.148 4.148 22 C -0.112 4.112 23 C -0.170 4.170 24 C -0.134 4.134 25 C -0.227 4.227 26 C -0.008 4.008 27 O -0.300 6.300 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.046 0.954 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.458 4.212 -0.264 12.210 hybrid contribution -0.459 -0.139 -0.369 0.605 sum -11.917 4.073 -0.634 12.610 Atomic orbital electron populations 1.21710 0.95561 1.01193 1.01992 1.21539 0.96215 0.94758 1.02889 1.22169 0.94215 0.93578 0.86607 0.92957 1.22506 0.94215 0.97476 1.04041 1.21733 0.90525 0.95374 0.95223 0.91493 1.62632 1.02315 1.13884 1.46112 1.20353 0.96497 0.93688 0.86983 1.21044 0.89263 1.34697 1.10423 0.89930 1.24758 0.94648 0.94511 0.96959 1.69925 1.13017 1.38722 1.28526 0.86398 0.81657 0.76219 0.81922 1.20490 1.25532 1.18490 1.20729 0.92891 0.89550 0.98337 1.19065 0.93485 0.99873 0.93023 1.20368 0.92628 0.92509 0.97326 1.20428 0.95016 1.03697 0.95681 1.20518 0.97449 1.00016 0.93186 1.20507 0.93508 1.05713 0.97250 1.20430 0.94773 1.02916 0.95306 1.22894 0.96524 1.01923 1.01363 1.22449 0.94162 0.83049 1.01185 1.87873 1.78573 1.24693 1.38855 0.92066 0.93171 0.93017 0.90733 0.91057 0.90447 0.90136 0.94506 0.98011 0.93193 0.92535 0.95370 0.88316 0.88614 0.88837 0.88896 0.88846 0.90408 0.91228 0.93810 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.81 37.16 0.36 -1.21 16 2 C -0.12 -1.46 5.64 -26.73 -0.15 -1.61 16 3 C 0.09 1.30 2.64 -26.68 -0.07 1.23 16 4 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.14 -2.42 3.32 -26.59 -0.09 -2.51 16 6 C 0.08 1.35 2.31 -67.53 -0.16 1.19 16 7 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 8 N -0.53 -10.48 2.15 -229.30 -0.49 -10.97 16 9 C 0.15 3.27 3.45 -4.98 -0.02 3.26 16 10 C -0.52 -13.14 5.63 -34.44 -0.19 -13.33 16 11 H 0.08 2.26 5.72 -52.49 -0.30 1.96 16 12 C 0.10 2.62 4.40 -17.82 -0.08 2.54 16 13 N -0.87 -24.51 13.43 55.43 0.74 -23.76 16 14 Si 0.91 22.61 25.46 -169.99 -4.33 18.28 16 15 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.33 -8.58 7.11 56.52 0.40 -8.18 16 17 H -0.26 -6.02 4.00 56.52 0.23 -5.79 16 18 C 0.11 2.12 4.57 -4.97 -0.02 2.10 16 19 C -0.05 -1.14 3.54 -104.62 -0.37 -1.51 16 20 C -0.01 -0.21 5.46 -39.58 -0.22 -0.42 16 21 C -0.13 -2.80 9.49 -39.58 -0.38 -3.18 16 22 C -0.09 -1.98 9.97 -39.58 -0.39 -2.38 16 23 C -0.15 -3.20 10.05 -39.58 -0.40 -3.60 16 24 C -0.12 -2.47 9.55 -39.58 -0.38 -2.85 16 25 C -0.19 -2.75 4.73 -26.60 -0.13 -2.88 16 26 C 0.07 0.89 6.84 37.20 0.25 1.14 16 27 O -0.38 -5.56 9.94 -35.23 -0.35 -5.91 16 28 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.39 6.59 -51.93 -0.34 1.04 16 34 H 0.08 1.50 5.98 -51.93 -0.31 1.19 16 35 H 0.04 0.84 4.88 -51.93 -0.25 0.59 16 36 H 0.00 0.04 6.72 -51.93 -0.35 -0.31 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 38 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 39 H 0.03 0.50 6.91 -51.93 -0.36 0.15 16 40 H 0.10 2.10 7.10 -52.49 -0.37 1.72 16 41 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 42 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 45 H 0.08 1.27 6.46 -51.93 -0.34 0.94 16 46 H 0.07 0.96 6.94 -51.93 -0.36 0.60 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 349.23 15.07 5.26 5.26 Total: -1.00 -27.97 349.23 -9.76 -37.73 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.18 Total: 3.39 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.42 Total: -24.03 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.25 Total: -34.73 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.35 Total: -5.91 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.33 Total: 18.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.97 -9.76 -37.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170204029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.537 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds