Wall clock time and date at job start Tue Mar 31 2020 10:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46733 * 2 1 4 4 H 1.08993 * 109.49311 * 305.03161 * 3 2 1 5 5 C 1.53089 * 109.47835 * 184.99847 * 3 2 1 6 6 C 1.53184 * 109.16275 * 182.41064 * 5 3 2 7 7 H 1.08994 * 109.54223 * 297.02751 * 6 5 3 8 8 N 1.46901 * 109.54247 * 176.85093 * 6 5 3 9 9 C 1.46900 * 110.99753 * 298.94999 * 8 6 5 10 10 C 1.50702 * 109.46780 * 170.00396 * 9 8 6 11 11 H 1.08002 * 120.00299 * 120.00624 * 10 9 8 12 12 C 1.37884 * 119.99942 * 299.72183 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.46898 * 110.99697 * 175.00110 * 8 6 5 19 19 C 1.50705 * 109.47032 * 189.99750 * 18 8 6 20 20 C 1.38236 * 119.99848 * 269.72381 * 19 18 8 21 21 C 1.38238 * 119.99740 * 179.76392 * 20 19 18 22 22 C 1.38241 * 119.99894 * 0.51308 * 21 20 19 23 23 C 1.38239 * 119.99840 * 359.73926 * 22 21 20 24 24 C 1.38233 * 119.99691 * 90.00247 * 19 18 8 25 25 C 1.53170 * 109.03418 * 56.98159 * 6 5 3 26 26 C 1.53088 * 109.16654 * 303.01795 * 25 6 5 27 27 O 1.42903 * 109.47687 * 65.05914 * 3 2 1 28 28 H 1.08998 * 109.47596 * 299.99422 * 1 2 3 29 29 H 1.09001 * 109.47184 * 60.00199 * 1 2 3 30 30 H 1.09004 * 109.47121 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47145 * 240.00573 * 2 1 3 32 32 H 1.09001 * 109.47616 * 120.00119 * 2 1 3 33 33 H 1.08998 * 109.52450 * 62.50662 * 5 3 2 34 34 H 1.09001 * 109.57838 * 302.35106 * 5 3 2 35 35 H 1.08994 * 109.47148 * 50.00752 * 9 8 6 36 36 H 1.09001 * 109.47278 * 290.00262 * 9 8 6 37 37 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.47476 * 309.99812 * 18 8 6 39 39 H 1.08999 * 109.47626 * 70.00015 * 18 8 6 40 40 H 1.07997 * 119.99997 * 0.02562 * 20 19 18 41 41 H 1.08001 * 120.00201 * 180.23328 * 21 20 19 42 42 H 1.07994 * 119.99878 * 179.72124 * 22 21 20 43 43 H 1.08000 * 119.99570 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.00312 * 359.97438 * 24 19 18 45 45 H 1.09001 * 109.52593 * 62.92543 * 25 6 5 46 46 H 1.09001 * 109.52346 * 183.11362 * 25 6 5 47 47 H 1.08995 * 109.48486 * 297.62932 * 26 25 6 48 48 H 1.08997 * 109.49386 * 177.59396 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6050 1.9820 -0.8413 5 6 3.5656 1.4447 -0.1258 6 6 4.0732 2.8887 -0.0644 7 1 3.6802 3.4496 -0.9123 8 7 5.5415 2.8957 -0.1086 9 6 6.1061 2.1717 1.0381 10 6 7.5879 1.9868 0.8353 11 1 8.2863 2.4002 1.5479 12 6 8.0519 1.2850 -0.2571 13 7 9.3449 1.1190 -0.4312 14 14 6.8441 0.5700 -1.4896 15 1 6.5767 1.5676 -2.5566 16 1 7.4215 -0.6578 -2.0934 17 1 5.5739 0.2315 -0.7988 18 6 6.0597 4.2689 -0.1711 19 6 7.5382 4.2351 -0.4611 20 6 8.4460 4.1923 0.5805 21 6 9.8020 4.1564 0.3144 22 6 10.2505 4.1741 -0.9931 23 6 9.3427 4.2223 -2.0346 24 6 7.9866 4.2529 -1.7685 25 6 3.5967 3.5306 1.2421 26 6 2.0698 3.4480 1.3151 27 8 1.6630 2.0812 1.2216 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 3.8533 0.9976 -1.0773 34 1 4.0003 0.8707 0.6926 35 1 5.6267 1.1966 1.1239 36 1 5.9327 2.7433 1.9499 37 1 9.6713 0.6255 -1.1998 38 1 5.5466 4.8152 -0.9624 39 1 5.8880 4.7659 0.7837 40 1 8.0957 4.1825 1.6021 41 1 10.5112 4.1191 1.1281 42 1 11.3100 4.1507 -1.2009 43 1 9.6932 4.2366 -3.0560 44 1 7.2774 4.2906 -2.5822 45 1 4.0311 2.9991 2.0888 46 1 3.9066 4.5753 1.2689 47 1 1.6353 4.0136 0.4909 48 1 1.7278 3.8649 2.2623 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170204029.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:35 Heat of formation + Delta-G solvation = -16.225851 kcal Electronic energy + Delta-G solvation = -26876.095338 eV Core-core repulsion = 23509.842725 eV Total energy + Delta-G solvation = -3366.252612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.12644 -39.89148 -37.87840 -34.90493 -34.53429 -33.37757 -31.56046 -31.23016 -30.72272 -29.48815 -26.47021 -24.78615 -24.52870 -23.60665 -23.05814 -22.05192 -21.51664 -20.49377 -18.49575 -17.48972 -17.35818 -17.16714 -16.65415 -15.99990 -15.97491 -15.64739 -15.45511 -15.01217 -14.84573 -14.79575 -14.54924 -14.32787 -14.11094 -13.84591 -13.59955 -13.20393 -13.15804 -12.83918 -12.74893 -12.61028 -12.46362 -12.18736 -12.05985 -11.84602 -11.75188 -11.71206 -11.56255 -11.43717 -11.34658 -11.15442 -10.91122 -10.54167 -10.34914 -9.18764 -9.04028 -8.78332 -7.97419 -5.86950 1.01304 1.08830 1.56616 1.63248 1.70636 2.67237 2.86710 3.09381 3.36014 3.65073 3.84551 3.88108 4.00161 4.16403 4.19332 4.21263 4.30540 4.35060 4.40566 4.48715 4.50559 4.53272 4.56293 4.63873 4.73616 4.77877 4.84136 4.85838 4.91719 4.94979 5.05171 5.09635 5.11264 5.15271 5.18138 5.22048 5.27232 5.39367 5.45328 5.63499 5.64107 5.74848 6.01327 6.10550 6.17544 6.24911 6.34206 6.49713 6.64677 6.71506 6.94655 7.66368 9.07850 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021262 B = 0.005264 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.607808 B = 5317.939138 C = 5949.035201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.098 3.902 4 H 0.068 0.932 5 C -0.143 4.143 6 C 0.078 3.922 7 H 0.084 0.916 8 N -0.539 5.539 9 C 0.163 3.837 10 C -0.506 4.506 11 H 0.058 0.942 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.940 3.060 15 H -0.285 1.285 16 H -0.348 1.348 17 H -0.238 1.238 18 C 0.113 3.887 19 C -0.059 4.059 20 C -0.022 4.022 21 C -0.138 4.138 22 C -0.106 4.106 23 C -0.157 4.157 24 C -0.127 4.127 25 C -0.179 4.179 26 C 0.069 3.931 27 O -0.392 6.392 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.028 0.972 36 H 0.006 0.994 37 H 0.250 0.750 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.242 5.711 -0.363 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.040 3.960 4 H 0.086 0.914 5 C -0.181 4.181 6 C -0.030 4.030 7 H 0.102 0.898 8 N -0.263 5.263 9 C 0.038 3.962 10 C -0.543 4.543 11 H 0.076 0.924 12 C -0.135 4.135 13 N -0.537 5.537 14 Si 0.774 3.226 15 H -0.212 1.212 16 H -0.281 1.281 17 H -0.162 1.162 18 C -0.014 4.014 19 C -0.060 4.060 20 C -0.040 4.040 21 C -0.157 4.157 22 C -0.124 4.124 23 C -0.175 4.175 24 C -0.145 4.145 25 C -0.218 4.218 26 C -0.008 4.008 27 O -0.312 6.312 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.075 0.925 46 H 0.100 0.900 47 H 0.082 0.918 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.092 5.302 -0.721 15.074 hybrid contribution 0.381 -0.401 -0.189 0.585 sum -13.711 4.901 -0.910 14.589 Atomic orbital electron populations 1.21657 0.93928 1.02106 1.02145 1.21578 0.97641 0.93858 1.02592 1.22154 0.92111 0.94665 0.87073 0.91365 1.22459 0.96407 0.97039 1.02206 1.21837 0.88201 0.95881 0.97077 0.89805 1.62333 1.04655 1.14511 1.44822 1.20057 0.94291 0.93788 0.88079 1.21122 0.90764 1.33424 1.09013 0.92430 1.25105 0.95069 0.95193 0.98097 1.70038 1.14172 1.40648 1.28874 0.85850 0.81506 0.74623 0.80623 1.21160 1.28072 1.16165 1.20782 0.91549 0.89249 0.99798 1.19326 0.94804 0.99102 0.92737 1.20446 0.92856 0.93240 0.97502 1.20643 0.95449 1.03408 0.96223 1.20742 0.98419 1.00131 0.93120 1.20813 0.93664 1.04842 0.98192 1.20675 0.95165 1.02897 0.95807 1.22791 0.98020 1.01976 0.99061 1.22586 0.92586 0.82536 1.03092 1.87879 1.78446 1.25705 1.39139 0.92681 0.92161 0.91816 0.90240 0.92249 0.91795 0.92534 0.95374 0.97547 0.94158 0.90324 0.94114 0.88574 0.88310 0.87470 0.87129 0.87885 0.92479 0.89996 0.91836 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.81 71.98 0.71 -1.93 16 2 C -0.12 -2.74 5.64 30.59 0.17 -2.57 16 3 C 0.10 2.49 2.64 30.63 0.08 2.57 16 4 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 5 C -0.14 -4.52 3.32 30.69 0.10 -4.42 16 6 C 0.08 2.42 2.31 45.03 0.10 2.52 16 7 H 0.08 2.35 8.03 -2.39 -0.02 2.33 16 8 N -0.54 -20.47 2.15 -879.38 -1.89 -22.36 16 9 C 0.16 7.04 3.45 85.56 0.30 7.34 16 10 C -0.51 -25.76 5.63 25.60 0.14 -25.61 16 11 H 0.06 3.22 5.72 -2.91 -0.02 3.20 16 12 C 0.07 3.66 4.40 84.66 0.37 4.04 16 13 N -0.90 -51.74 13.43 21.45 0.29 -51.45 16 14 Si 0.94 46.47 25.46 68.60 1.75 48.21 16 15 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 16 H -0.35 -18.50 7.11 99.48 0.71 -17.79 16 17 H -0.24 -10.74 4.00 99.48 0.40 -10.34 16 18 C 0.11 4.01 4.57 85.56 0.39 4.40 16 19 C -0.06 -2.44 3.54 -19.86 -0.07 -2.51 16 20 C -0.02 -0.94 5.46 22.27 0.12 -0.81 16 21 C -0.14 -6.04 9.49 22.27 0.21 -5.83 16 22 C -0.11 -4.47 9.97 22.27 0.22 -4.25 16 23 C -0.16 -6.50 10.05 22.27 0.22 -6.28 16 24 C -0.13 -5.27 9.55 22.27 0.21 -5.06 16 25 C -0.18 -4.74 4.73 30.68 0.15 -4.59 16 26 C 0.07 1.52 6.84 72.01 0.49 2.01 16 27 O -0.39 -10.33 9.94 -148.98 -1.48 -11.82 16 28 H 0.05 1.10 7.82 -2.39 -0.02 1.08 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 2.17 6.59 -2.39 -0.02 2.15 16 34 H 0.06 2.05 5.98 -2.39 -0.01 2.04 16 35 H 0.03 1.28 4.88 -2.39 -0.01 1.27 16 36 H 0.01 0.27 6.72 -2.39 -0.02 0.25 16 37 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.08 2.45 7.94 -2.39 -0.02 2.43 16 39 H 0.04 1.35 6.91 -2.39 -0.02 1.33 16 40 H 0.10 4.11 7.10 -2.91 -0.02 4.09 16 41 H 0.10 4.12 8.06 -2.91 -0.02 4.10 16 42 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 43 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 44 H 0.10 4.03 8.06 -2.91 -0.02 4.01 16 45 H 0.06 1.76 6.46 -2.39 -0.02 1.74 16 46 H 0.08 1.97 6.94 -2.39 -0.02 1.95 16 47 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -59.75 349.23 3.20 -56.55 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.61 Total: 21.85 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.93 Total: -40.99 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -1.60 Total: -73.81 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -1.48 Total: -11.82 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 1.75 Total: 48.21 kcal Total: -59.75 3.20 -56.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170204029.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.322 kcal (2) G-P(sol) polarization free energy of solvation -59.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds