Wall clock time and date at job start Tue Mar 31 2020 09:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47271 * 2 1 4 4 C 1.53004 * 109.47325 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47344 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99645 * 269.99816 * 5 4 3 7 7 H 1.08001 * 119.99611 * 142.63877 * 6 5 4 8 8 C 1.38946 * 120.00335 * 322.63924 * 6 5 4 9 9 N 1.31411 * 120.00510 * 159.79430 * 8 6 5 10 10 Si 1.86806 * 119.99666 * 339.79678 * 8 6 5 11 11 H 1.48499 * 109.47160 * 95.29971 * 10 8 6 12 12 H 1.48506 * 109.47070 * 215.29894 * 10 8 6 13 13 H 1.48504 * 109.47355 * 335.29994 * 10 8 6 14 14 C 1.34772 * 120.00065 * 89.99181 * 5 4 3 15 15 O 1.21296 * 119.99936 * 4.00862 * 14 5 4 16 16 C 1.50704 * 119.99963 * 183.99980 * 14 5 4 17 17 C 1.52997 * 109.47194 * 305.05423 * 16 14 5 18 18 C 1.53000 * 109.47070 * 185.05265 * 16 14 5 19 19 C 1.50702 * 109.46438 * 65.05598 * 16 14 5 20 20 C 1.38241 * 119.99646 * 187.92468 * 19 16 14 21 21 C 1.38232 * 120.00002 * 179.72550 * 20 19 16 22 22 C 1.38232 * 120.00183 * 0.25524 * 21 20 19 23 23 C 1.50696 * 120.00064 * 180.02562 * 22 21 20 24 24 C 1.38238 * 119.99982 * 0.02562 * 22 21 20 25 25 C 1.38232 * 120.00486 * 8.15872 * 19 16 14 26 26 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46871 * 300.00135 * 1 2 3 28 28 H 1.08997 * 109.47064 * 59.99947 * 1 2 3 29 29 H 1.08997 * 109.47248 * 240.00067 * 2 1 3 30 30 H 1.09002 * 109.47720 * 119.99832 * 2 1 3 31 31 H 1.09003 * 109.47283 * 60.00117 * 3 2 1 32 32 H 1.09006 * 109.47252 * 299.99859 * 3 2 1 33 33 H 1.08998 * 109.47242 * 59.99136 * 4 3 2 34 34 H 1.09006 * 109.46496 * 299.99900 * 4 3 2 35 35 H 0.96997 * 119.99889 * 180.02562 * 9 8 6 36 36 H 1.08998 * 109.46780 * 191.96968 * 17 16 14 37 37 H 1.08994 * 109.47461 * 311.97557 * 17 16 14 38 38 H 1.09007 * 109.46921 * 71.97581 * 17 16 14 39 39 H 1.08998 * 109.47058 * 295.24306 * 18 16 14 40 40 H 1.08992 * 109.47090 * 55.24691 * 18 16 14 41 41 H 1.08997 * 109.46643 * 175.24606 * 18 16 14 42 42 H 1.08004 * 120.00047 * 359.97438 * 20 19 16 43 43 H 1.07999 * 119.99970 * 180.27685 * 21 20 19 44 44 H 1.08995 * 109.47527 * 90.00158 * 23 22 21 45 45 H 1.09004 * 109.47036 * 209.99998 * 23 22 21 46 46 H 1.09000 * 109.47125 * 329.99584 * 23 22 21 47 47 H 1.07996 * 120.00110 * 179.97438 * 24 22 21 48 48 H 1.07996 * 120.00188 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2864 3.4706 -1.1871 7 1 4.0559 4.5214 -1.2823 8 6 4.8141 2.7744 -2.2676 9 7 4.6711 3.2455 -3.4860 10 14 5.7267 1.1686 -1.9882 11 1 4.7922 0.0294 -2.1729 12 1 6.8419 1.0570 -2.9626 13 1 6.2718 1.1427 -0.6070 14 6 4.2834 3.4584 1.1674 15 8 4.1515 2.8636 2.2163 16 6 4.6990 4.9070 1.1696 17 6 5.9462 5.0810 0.3008 18 6 5.0099 5.3461 2.6019 19 6 3.5798 5.7514 0.6170 20 6 3.7865 7.0952 0.3671 21 6 2.7616 7.8686 -0.1451 22 6 1.5285 7.2994 -0.4025 23 6 0.4114 8.1424 -0.9615 24 6 1.3200 5.9569 -0.1472 25 6 2.3451 5.1834 0.3646 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9330 0.9287 -0.8908 34 1 3.9336 0.9285 0.8892 35 1 5.0392 2.7592 -4.2402 36 1 6.3701 6.0712 0.4679 37 1 6.6819 4.3215 0.5648 38 1 5.6750 4.9746 -0.7496 39 1 4.1003 5.3023 3.2009 40 1 5.7598 4.6817 3.0310 41 1 5.3910 6.3673 2.5941 42 1 4.7499 7.5400 0.5683 43 1 2.9245 8.9175 -0.3446 44 1 0.4469 8.1168 -2.0506 45 1 -0.5462 7.7495 -0.6198 46 1 0.5255 9.1707 -0.6183 47 1 0.3565 5.5124 -0.3479 48 1 2.1824 4.1345 0.5637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180606390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:18 Heat of formation + Delta-G solvation = -18.496970 kcal Electronic energy + Delta-G solvation = -26773.919616 eV Core-core repulsion = 23407.568521 eV Total energy + Delta-G solvation = -3366.351095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 4.73 seconds Orbital eigenvalues (eV) -40.17102 -38.24698 -35.84627 -34.74203 -33.91609 -31.88318 -31.18751 -30.39205 -28.68114 -26.43671 -26.25696 -25.00203 -23.92771 -22.21857 -21.60037 -20.77048 -20.20350 -18.52517 -17.07259 -16.53356 -15.38076 -15.31348 -14.84689 -14.72380 -14.42677 -13.96972 -13.67136 -13.50617 -13.31587 -13.11426 -12.93972 -12.87686 -12.62593 -12.40051 -12.09479 -11.95316 -11.90171 -11.58829 -11.43638 -11.37637 -11.21575 -11.20208 -11.04470 -10.70404 -10.62885 -10.56800 -10.38322 -10.25080 -10.10908 -9.82217 -9.71218 -9.08661 -8.47829 -8.32173 -7.89788 -7.71853 -6.44181 -4.02138 1.89119 1.99248 3.03794 3.21296 3.28989 3.68603 4.12652 4.30523 4.33241 4.92126 5.21367 5.23810 5.34161 5.36767 5.41165 5.49514 5.51594 5.55055 5.74816 5.78630 5.81994 5.85474 5.95507 6.00422 6.07337 6.10079 6.14650 6.17380 6.22225 6.24157 6.26009 6.38173 6.40688 6.48719 6.52548 6.56461 6.63030 6.66756 6.72199 6.76915 6.89067 7.01067 7.10244 7.25248 7.27144 7.38981 7.56768 8.09759 8.29405 8.95785 9.35675 9.68276 10.64564 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011168 B = 0.006643 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.551524 B = 4213.875910 C = 4742.267464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.126 4.126 4 C 0.101 3.899 5 N -0.462 5.462 6 C -0.337 4.337 7 H 0.120 0.880 8 C 0.067 3.933 9 N -0.859 5.859 10 Si 0.870 3.130 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.491 3.509 15 O -0.596 6.596 16 C -0.025 4.025 17 C -0.144 4.144 18 C -0.118 4.118 19 C -0.050 4.050 20 C -0.111 4.111 21 C -0.126 4.126 22 C -0.099 4.099 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.089 4.089 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.273 0.727 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.052 0.948 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.113 0.887 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 4.231 4.213 7.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.022 4.022 5 N -0.181 5.181 6 C -0.464 4.464 7 H 0.137 0.863 8 C -0.140 4.140 9 N -0.494 5.494 10 Si 0.699 3.301 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.187 1.187 14 C 0.280 3.720 15 O -0.481 6.481 16 C -0.028 4.028 17 C -0.201 4.201 18 C -0.176 4.176 19 C -0.051 4.051 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.099 4.099 23 C -0.165 4.165 24 C -0.137 4.137 25 C -0.107 4.107 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.135 0.865 43 H 0.131 0.869 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.131 0.869 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.793 3.910 4.494 7.646 hybrid contribution 0.575 -0.993 -0.323 1.192 sum -4.218 2.917 4.170 6.610 Atomic orbital electron populations 1.21736 0.96138 1.00893 1.01738 1.21476 0.95596 0.97464 1.01597 1.21871 0.96101 0.96046 1.02427 1.21632 0.93913 0.85624 1.01066 1.43760 1.57010 1.11510 1.05843 1.19293 1.42773 0.97768 0.86551 0.86332 1.25282 0.96099 0.97775 0.94842 1.69748 1.41590 1.39984 0.98097 0.87047 0.80089 0.83966 0.79012 1.20305 1.21761 1.18721 1.20161 0.79527 0.88785 0.83533 1.90535 1.57127 1.68425 1.31999 1.19448 0.95103 0.91949 0.96255 1.22130 0.94677 0.99602 1.03694 1.21622 1.01774 0.99830 0.94335 1.19482 0.93985 0.93443 0.98161 1.20824 0.98637 0.93392 1.00029 1.20810 0.93029 0.99232 1.01305 1.19762 0.95310 0.94455 1.00416 1.20718 0.96390 0.98615 1.00791 1.20885 0.99016 0.93282 1.00470 1.21214 0.92395 0.99898 0.97194 0.93288 0.92934 0.92749 0.92285 0.92315 0.92194 0.91043 0.91885 0.91392 0.91625 0.93792 0.93223 0.87605 0.92635 0.92218 0.92909 0.86501 0.86850 0.91535 0.92105 0.92171 0.86855 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.15 0.37 -1.61 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.13 -2.39 5.02 -26.73 -0.13 -2.52 16 4 C 0.10 2.19 4.23 -4.04 -0.02 2.17 16 5 N -0.46 -10.68 1.43 -114.81 -0.16 -10.84 16 6 C -0.34 -8.25 6.08 -14.94 -0.09 -8.34 16 7 H 0.12 3.06 4.59 -52.49 -0.24 2.82 16 8 C 0.07 1.70 5.34 -17.47 -0.09 1.61 16 9 N -0.86 -22.98 13.96 55.50 0.77 -22.20 16 10 Si 0.87 20.27 24.88 -169.99 -4.23 16.04 16 11 H -0.28 -6.23 6.70 56.52 0.38 -5.85 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 14 C 0.49 11.20 4.89 -10.99 -0.05 11.14 16 15 O -0.60 -14.75 15.54 5.54 0.09 -14.67 16 16 C -0.02 -0.49 0.59 -156.81 -0.09 -0.58 16 17 C -0.14 -2.78 7.40 37.16 0.27 -2.50 16 18 C -0.12 -2.07 7.60 37.16 0.28 -1.79 16 19 C -0.05 -0.96 3.24 -104.62 -0.34 -1.30 16 20 C -0.11 -1.86 8.94 -39.58 -0.35 -2.22 16 21 C -0.13 -1.96 9.70 -39.59 -0.38 -2.34 16 22 C -0.10 -1.57 5.88 -104.63 -0.62 -2.18 16 23 C -0.11 -1.32 10.01 36.00 0.36 -0.96 16 24 C -0.12 -2.07 9.70 -39.58 -0.38 -2.45 16 25 C -0.09 -1.75 7.63 -39.58 -0.30 -2.05 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.15 7.73 -51.93 -0.40 0.75 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.06 1.42 3.07 -51.93 -0.16 1.26 16 34 H 0.07 1.50 7.37 -51.93 -0.38 1.11 16 35 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.04 0.71 7.40 -51.93 -0.38 0.33 16 37 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.11 2.31 4.99 -51.93 -0.26 2.06 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 41 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 42 H 0.12 1.74 7.36 -52.48 -0.39 1.35 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 46 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 47 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 48 H 0.12 2.63 5.05 -52.49 -0.26 2.37 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -27.92 366.23 -7.70 -35.62 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.96 Total: 8.55 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: -1.73 Total: -18.02 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.61 Total: -33.04 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.09 Total: -14.67 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.23 Total: 16.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.92 -7.70 -35.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180606390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.124 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.73 seconds