Wall clock time and date at job start Tue Mar 31 2020 09:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47003 * 2 1 4 4 C 1.52994 * 109.47099 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46984 * 179.97438 * 4 3 2 6 6 C 1.37089 * 120.00446 * 272.76587 * 5 4 3 7 7 H 1.07998 * 120.00212 * 135.39842 * 6 5 4 8 8 C 1.38958 * 119.99817 * 315.39841 * 6 5 4 9 9 N 1.31404 * 119.99799 * 348.96337 * 8 6 5 10 10 Si 1.86803 * 119.99878 * 168.96496 * 8 6 5 11 11 H 1.48508 * 109.46948 * 60.00026 * 10 8 6 12 12 H 1.48494 * 109.47035 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47284 * 300.00069 * 10 8 6 14 14 C 1.34777 * 119.99538 * 92.76360 * 5 4 3 15 15 O 1.21295 * 120.00130 * 5.98416 * 14 5 4 16 16 C 1.50696 * 120.00006 * 185.97704 * 14 5 4 17 17 C 1.53001 * 109.47245 * 189.55522 * 16 14 5 18 18 C 1.53000 * 109.46825 * 69.55547 * 16 14 5 19 19 C 1.50695 * 109.47262 * 309.55861 * 16 14 5 20 20 C 1.38262 * 120.00183 * 118.59659 * 19 16 14 21 21 C 1.38214 * 119.99425 * 180.27442 * 20 19 16 22 22 C 1.38252 * 120.00641 * 359.74638 * 21 20 19 23 23 C 1.38213 * 119.99919 * 359.97438 * 22 21 20 24 24 C 1.38218 * 120.00020 * 298.34209 * 19 16 14 25 25 C 1.50701 * 119.99638 * 359.97438 * 24 19 16 26 26 H 1.09006 * 109.46850 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47802 * 299.99791 * 1 2 3 28 28 H 1.08997 * 109.47400 * 60.00421 * 1 2 3 29 29 H 1.08996 * 109.47802 * 240.00209 * 2 1 3 30 30 H 1.08997 * 109.47400 * 119.99579 * 2 1 3 31 31 H 1.09000 * 109.46659 * 60.00011 * 3 2 1 32 32 H 1.08997 * 109.46699 * 300.00008 * 3 2 1 33 33 H 1.09000 * 109.46910 * 60.00711 * 4 3 2 34 34 H 1.08997 * 109.47798 * 299.99881 * 4 3 2 35 35 H 0.97003 * 119.99814 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46909 * 172.71122 * 17 16 14 37 37 H 1.09009 * 109.46676 * 292.70485 * 17 16 14 38 38 H 1.08993 * 109.46987 * 52.70951 * 17 16 14 39 39 H 1.09002 * 109.47375 * 306.05127 * 18 16 14 40 40 H 1.09000 * 109.47440 * 66.04903 * 18 16 14 41 41 H 1.09003 * 109.47240 * 186.04659 * 18 16 14 42 42 H 1.07996 * 119.99938 * 0.04051 * 20 19 16 43 43 H 1.08009 * 119.99577 * 179.76893 * 21 20 19 44 44 H 1.07999 * 120.00174 * 180.02562 * 22 21 20 45 45 H 1.07996 * 120.00158 * 179.97438 * 23 22 21 46 46 H 1.08995 * 109.47544 * 268.90284 * 25 24 19 47 47 H 1.08999 * 109.47103 * 148.90182 * 25 24 19 48 48 H 1.09000 * 109.47177 * 28.90242 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2332 3.4887 -1.1861 7 1 3.8909 4.5077 -1.2896 8 6 4.8510 2.8512 -2.2552 9 7 5.4589 1.7008 -2.0718 10 14 4.8174 3.6299 -3.9528 11 1 5.4746 4.9606 -3.9001 12 1 5.5424 2.7581 -4.9117 13 1 3.4092 3.7904 -4.3961 14 6 4.3353 3.4411 1.1657 15 8 4.2851 2.8213 2.2071 16 6 4.7077 4.9013 1.1752 17 6 5.1995 5.2932 2.5700 18 6 3.4825 5.7424 0.8114 19 6 5.8024 5.1471 0.1691 20 6 5.5852 6.0049 -0.8932 21 6 6.5874 6.2259 -1.8190 22 6 7.8088 5.5933 -1.6799 23 6 8.0280 4.7403 -0.6147 24 6 7.0255 4.5191 0.3113 25 6 7.2643 3.5891 1.4728 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.9288 -0.8892 34 1 3.9330 0.9290 0.8908 35 1 5.8899 1.2556 -2.8182 36 1 5.5895 6.3107 2.5451 37 1 4.3706 5.2390 3.2760 38 1 5.9884 4.6092 2.8825 39 1 3.0679 5.3908 -0.1334 40 1 2.7312 5.6480 1.5953 41 1 3.7756 6.7877 0.7130 42 1 4.6312 6.4993 -1.0017 43 1 6.4165 6.8931 -2.6510 44 1 8.5920 5.7663 -2.4031 45 1 8.9819 4.2458 -0.5063 46 1 7.6803 4.1512 2.3089 47 1 7.9648 2.8087 1.1753 48 1 6.3206 3.1345 1.7743 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182463876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:26 Heat of formation + Delta-G solvation = -17.159654 kcal Electronic energy + Delta-G solvation = -27418.735682 eV Core-core repulsion = 24052.442577 eV Total energy + Delta-G solvation = -3366.293105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.15212 -37.82295 -35.58107 -34.28476 -33.79048 -32.06236 -31.36711 -29.04182 -28.40697 -26.93303 -25.84688 -24.88827 -23.76982 -22.11095 -20.73373 -20.53719 -20.02831 -18.60271 -16.95643 -16.17663 -15.37022 -14.83873 -14.64773 -14.59926 -14.27043 -13.85061 -13.72714 -13.48747 -13.24562 -13.13640 -12.61596 -12.32625 -12.17429 -12.14360 -11.63581 -11.58428 -11.57158 -11.41539 -11.31278 -11.17193 -11.14267 -10.86396 -10.78041 -10.57495 -10.51152 -10.45258 -10.28960 -10.09034 -9.91548 -9.72702 -9.63676 -9.00681 -8.52123 -7.88699 -7.61190 -7.19847 -6.23137 -4.01717 2.23135 2.25211 3.19062 3.24488 3.27017 3.91770 4.19302 4.56220 4.77712 5.12738 5.39142 5.48967 5.52268 5.56272 5.65084 5.67197 5.67470 5.76844 5.82518 6.01014 6.08199 6.10712 6.17143 6.24949 6.25189 6.29684 6.33682 6.38340 6.40548 6.43041 6.52131 6.54672 6.64507 6.66841 6.73257 6.77245 6.81026 6.84842 6.89128 7.07143 7.17653 7.27657 7.31340 7.45057 7.54161 7.62302 7.86245 8.11066 8.45056 9.17556 9.56330 10.00627 10.77033 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013028 B = 0.007699 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.682208 B = 3635.794319 C = 4716.894790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.125 4.125 4 C 0.110 3.890 5 N -0.431 5.431 6 C -0.330 4.330 7 H 0.093 0.907 8 C 0.059 3.941 9 N -0.860 5.860 10 Si 0.892 3.108 11 H -0.256 1.256 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.492 3.508 15 O -0.604 6.604 16 C -0.030 4.030 17 C -0.132 4.132 18 C -0.143 4.143 19 C -0.012 4.012 20 C -0.103 4.103 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.114 4.114 24 C -0.067 4.067 25 C -0.128 4.128 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.266 0.734 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 4.990 1.178 5.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.013 4.013 5 N -0.148 5.148 6 C -0.457 4.457 7 H 0.110 0.890 8 C -0.147 4.147 9 N -0.496 5.496 10 Si 0.719 3.281 11 H -0.180 1.180 12 H -0.213 1.213 13 H -0.203 1.203 14 C 0.281 3.719 15 O -0.491 6.491 16 C -0.033 4.033 17 C -0.190 4.190 18 C -0.201 4.201 19 C -0.012 4.012 20 C -0.121 4.121 21 C -0.144 4.144 22 C -0.154 4.154 23 C -0.132 4.132 24 C -0.067 4.067 25 C -0.185 4.185 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.133 0.867 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.926 4.506 1.534 4.849 hybrid contribution 0.044 0.208 -1.350 1.366 sum -0.882 4.713 0.184 4.799 Atomic orbital electron populations 1.21754 0.96719 1.00627 1.01412 1.21428 0.94878 0.97873 1.01559 1.21891 0.98113 0.95295 1.01079 1.21437 0.90867 0.85558 1.03455 1.43295 1.55289 1.11699 1.04498 1.19472 1.38127 0.99182 0.88924 0.88987 1.25257 0.94029 0.95867 0.99554 1.69793 1.31902 1.16100 1.31822 0.86537 0.78391 0.80416 0.82754 1.18049 1.21311 1.20303 1.20154 0.79204 0.88207 0.84369 1.90516 1.58462 1.67111 1.33021 1.19456 0.94379 0.94687 0.94818 1.21885 1.01960 1.00476 0.94644 1.21983 0.96619 0.98842 1.02609 1.19051 0.92595 0.94978 0.94576 1.20833 0.98165 0.98808 0.94334 1.20799 0.93977 1.00924 0.98677 1.20776 0.97218 0.99165 0.98200 1.20730 0.98357 0.98977 0.95171 1.19433 0.93403 0.96984 0.96850 1.21162 1.04165 0.97700 0.95432 0.93480 0.93163 0.93057 0.92240 0.92520 0.93439 0.92222 0.87742 0.92919 0.92364 0.93244 0.92564 0.91004 0.90620 0.92968 0.92391 0.86679 0.87636 0.87722 0.87555 0.92482 0.92802 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.50 5.53 -26.73 -0.15 -2.65 16 4 C 0.11 2.57 5.09 -4.04 -0.02 2.55 16 5 N -0.43 -10.32 2.48 -114.81 -0.28 -10.60 16 6 C -0.33 -7.83 5.96 -14.93 -0.09 -7.92 16 7 H 0.09 2.11 3.53 -52.49 -0.19 1.93 16 8 C 0.06 1.45 5.17 -17.47 -0.09 1.36 16 9 N -0.86 -22.26 11.32 55.50 0.63 -21.64 16 10 Si 0.89 19.42 29.57 -169.99 -5.03 14.39 16 11 H -0.26 -5.33 6.11 56.52 0.35 -4.98 16 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 C 0.49 11.47 4.45 -10.99 -0.05 11.42 16 15 O -0.60 -15.41 14.40 5.54 0.08 -15.33 16 16 C -0.03 -0.60 0.49 -156.82 -0.08 -0.68 16 17 C -0.13 -2.37 7.41 37.16 0.28 -2.09 16 18 C -0.14 -2.49 7.04 37.16 0.26 -2.23 16 19 C -0.01 -0.23 2.84 -104.62 -0.30 -0.53 16 20 C -0.10 -1.94 6.86 -39.58 -0.27 -2.21 16 21 C -0.13 -2.27 9.08 -39.59 -0.36 -2.63 16 22 C -0.14 -2.45 10.05 -39.59 -0.40 -2.85 16 23 C -0.11 -2.18 9.71 -39.58 -0.38 -2.57 16 24 C -0.07 -1.35 5.67 -104.62 -0.59 -1.95 16 25 C -0.13 -2.56 8.03 36.01 0.29 -2.27 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.10 2.61 5.62 -51.93 -0.29 2.32 16 34 H 0.05 1.29 7.27 -51.93 -0.38 0.92 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 37 H 0.06 0.98 8.12 -51.92 -0.42 0.56 16 38 H 0.07 1.33 4.55 -51.93 -0.24 1.10 16 39 H 0.08 1.40 5.34 -51.93 -0.28 1.12 16 40 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 41 H 0.06 0.86 7.19 -51.93 -0.37 0.49 16 42 H 0.12 1.96 5.74 -52.49 -0.30 1.66 16 43 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 44 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 46 H 0.06 0.98 7.26 -51.93 -0.38 0.61 16 47 H 0.05 1.05 8.09 -51.93 -0.42 0.63 16 48 H 0.09 2.12 3.43 -51.93 -0.18 1.94 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -27.37 359.18 -8.63 -36.01 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -7.70 Total: 10.85 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -1.74 Total: -19.09 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.34 Total: -32.24 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.08 Total: -15.33 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.37 -8.63 -36.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182463876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.846 kcal (2) G-P(sol) polarization free energy of solvation -27.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds