Wall clock time and date at job start Tue Mar 31 2020 09:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47003 * 2 1 4 4 C 1.52994 * 109.47099 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46984 * 179.97438 * 4 3 2 6 6 C 1.37089 * 120.00446 * 272.76587 * 5 4 3 7 7 H 1.07998 * 120.00212 * 135.39842 * 6 5 4 8 8 C 1.38958 * 119.99817 * 315.39841 * 6 5 4 9 9 N 1.31404 * 119.99799 * 348.96337 * 8 6 5 10 10 Si 1.86803 * 119.99878 * 168.96496 * 8 6 5 11 11 H 1.48508 * 109.46948 * 60.00026 * 10 8 6 12 12 H 1.48494 * 109.47035 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47284 * 300.00069 * 10 8 6 14 14 C 1.34777 * 119.99538 * 92.76360 * 5 4 3 15 15 O 1.21295 * 120.00130 * 5.98416 * 14 5 4 16 16 C 1.50696 * 120.00006 * 185.97704 * 14 5 4 17 17 C 1.53001 * 109.47245 * 189.55522 * 16 14 5 18 18 C 1.53000 * 109.46825 * 69.55547 * 16 14 5 19 19 C 1.50695 * 109.47262 * 309.55861 * 16 14 5 20 20 C 1.38262 * 120.00183 * 118.59659 * 19 16 14 21 21 C 1.38214 * 119.99425 * 180.27442 * 20 19 16 22 22 C 1.38252 * 120.00641 * 359.74638 * 21 20 19 23 23 C 1.38213 * 119.99919 * 359.97438 * 22 21 20 24 24 C 1.38218 * 120.00020 * 298.34209 * 19 16 14 25 25 C 1.50701 * 119.99638 * 359.97438 * 24 19 16 26 26 H 1.09006 * 109.46850 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47802 * 299.99791 * 1 2 3 28 28 H 1.08997 * 109.47400 * 60.00421 * 1 2 3 29 29 H 1.08996 * 109.47802 * 240.00209 * 2 1 3 30 30 H 1.08997 * 109.47400 * 119.99579 * 2 1 3 31 31 H 1.09000 * 109.46659 * 60.00011 * 3 2 1 32 32 H 1.08997 * 109.46699 * 300.00008 * 3 2 1 33 33 H 1.09000 * 109.46910 * 60.00711 * 4 3 2 34 34 H 1.08997 * 109.47798 * 299.99881 * 4 3 2 35 35 H 0.97003 * 119.99814 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46909 * 172.71122 * 17 16 14 37 37 H 1.09009 * 109.46676 * 292.70485 * 17 16 14 38 38 H 1.08993 * 109.46987 * 52.70951 * 17 16 14 39 39 H 1.09002 * 109.47375 * 306.05127 * 18 16 14 40 40 H 1.09000 * 109.47440 * 66.04903 * 18 16 14 41 41 H 1.09003 * 109.47240 * 186.04659 * 18 16 14 42 42 H 1.07996 * 119.99938 * 0.04051 * 20 19 16 43 43 H 1.08009 * 119.99577 * 179.76893 * 21 20 19 44 44 H 1.07999 * 120.00174 * 180.02562 * 22 21 20 45 45 H 1.07996 * 120.00158 * 179.97438 * 23 22 21 46 46 H 1.08995 * 109.47544 * 268.90284 * 25 24 19 47 47 H 1.08999 * 109.47103 * 148.90182 * 25 24 19 48 48 H 1.09000 * 109.47177 * 28.90242 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2332 3.4887 -1.1861 7 1 3.8909 4.5077 -1.2896 8 6 4.8510 2.8512 -2.2552 9 7 5.4589 1.7008 -2.0718 10 14 4.8174 3.6299 -3.9528 11 1 5.4746 4.9606 -3.9001 12 1 5.5424 2.7581 -4.9117 13 1 3.4092 3.7904 -4.3961 14 6 4.3353 3.4411 1.1657 15 8 4.2851 2.8213 2.2071 16 6 4.7077 4.9013 1.1752 17 6 5.1995 5.2932 2.5700 18 6 3.4825 5.7424 0.8114 19 6 5.8024 5.1471 0.1691 20 6 5.5852 6.0049 -0.8932 21 6 6.5874 6.2259 -1.8190 22 6 7.8088 5.5933 -1.6799 23 6 8.0280 4.7403 -0.6147 24 6 7.0255 4.5191 0.3113 25 6 7.2643 3.5891 1.4728 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.9288 -0.8892 34 1 3.9330 0.9290 0.8908 35 1 5.8899 1.2556 -2.8182 36 1 5.5895 6.3107 2.5451 37 1 4.3706 5.2390 3.2760 38 1 5.9884 4.6092 2.8825 39 1 3.0679 5.3908 -0.1334 40 1 2.7312 5.6480 1.5953 41 1 3.7756 6.7877 0.7130 42 1 4.6312 6.4993 -1.0017 43 1 6.4165 6.8931 -2.6510 44 1 8.5920 5.7663 -2.4031 45 1 8.9819 4.2458 -0.5063 46 1 7.6803 4.1512 2.3089 47 1 7.9648 2.8087 1.1753 48 1 6.3206 3.1345 1.7743 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182463876.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:25 Heat of formation + Delta-G solvation = -28.629363 kcal Electronic energy + Delta-G solvation = -27419.233046 eV Core-core repulsion = 24052.442577 eV Total energy + Delta-G solvation = -3366.790469 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.76973 -39.45204 -37.28876 -35.92565 -35.32161 -33.56228 -33.19972 -30.48310 -29.96836 -28.37130 -27.33375 -26.73369 -25.30659 -23.61699 -22.22034 -22.01284 -21.69565 -20.35376 -18.62743 -17.85736 -16.94247 -16.53590 -16.26938 -16.14838 -15.96097 -15.40841 -15.27331 -14.93740 -14.87970 -14.55369 -14.15318 -13.78662 -13.70677 -13.68784 -13.17510 -13.12360 -13.03609 -12.97525 -12.92739 -12.73726 -12.52973 -12.46320 -12.39632 -12.14442 -12.03949 -11.95676 -11.86897 -11.65725 -11.43853 -11.37470 -11.20517 -10.84572 -10.28289 -9.44841 -9.20023 -8.93489 -8.09164 -5.91435 0.77130 0.79561 1.48207 1.50668 1.54410 2.13554 2.41826 3.02442 3.12052 3.31341 3.92259 4.06086 4.09151 4.14258 4.23200 4.27882 4.30452 4.32833 4.43588 4.50183 4.55650 4.63721 4.77100 4.78791 4.84792 4.85881 4.91469 4.93987 4.97236 5.01060 5.04828 5.07817 5.13636 5.20466 5.22354 5.24353 5.36236 5.39097 5.44762 5.47683 5.54927 5.60163 5.73486 5.84485 5.87262 6.06621 6.26716 6.42943 6.57735 7.30661 7.72558 8.17081 8.91200 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.013028 B = 0.007699 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.682208 B = 3635.794319 C = 4716.894790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.111 4.111 4 C 0.112 3.888 5 N -0.443 5.443 6 C -0.323 4.323 7 H 0.105 0.895 8 C 0.023 3.977 9 N -0.894 5.894 10 Si 0.937 3.063 11 H -0.235 1.235 12 H -0.300 1.300 13 H -0.274 1.274 14 C 0.485 3.515 15 O -0.636 6.636 16 C -0.031 4.031 17 C -0.128 4.128 18 C -0.139 4.139 19 C -0.025 4.025 20 C -0.109 4.109 21 C -0.129 4.129 22 C -0.137 4.137 23 C -0.129 4.129 24 C -0.088 4.088 25 C -0.122 4.122 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.045 0.955 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 7.156 0.072 7.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.149 4.149 4 C -0.012 4.012 5 N -0.159 5.159 6 C -0.450 4.450 7 H 0.122 0.878 8 C -0.180 4.180 9 N -0.532 5.532 10 Si 0.762 3.238 11 H -0.158 1.158 12 H -0.226 1.226 13 H -0.199 1.199 14 C 0.275 3.725 15 O -0.525 6.525 16 C -0.034 4.034 17 C -0.185 4.185 18 C -0.196 4.196 19 C -0.026 4.026 20 C -0.127 4.127 21 C -0.147 4.147 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.088 4.088 25 C -0.179 4.179 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.134 0.866 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.530 6.697 0.429 6.883 hybrid contribution 0.290 -0.496 -0.951 1.110 sum -1.241 6.201 -0.522 6.346 Atomic orbital electron populations 1.21700 0.94111 1.02258 1.01796 1.21406 0.97112 0.95451 1.01450 1.21738 0.95523 0.97435 1.00251 1.21354 0.93067 0.85601 1.01186 1.43519 1.55575 1.11721 1.05086 1.19716 1.37241 0.99481 0.88584 0.87801 1.25864 0.93840 0.96116 1.02200 1.69933 1.33444 1.17585 1.32234 0.85830 0.78446 0.80421 0.79102 1.15772 1.22646 1.19933 1.20817 0.78195 0.89869 0.83579 1.90481 1.59627 1.68360 1.34002 1.19502 0.95559 0.92260 0.96049 1.21851 1.01556 1.01540 0.93574 1.21963 0.95547 1.00055 1.02010 1.19126 0.92325 0.95811 0.95296 1.21086 0.99213 0.98502 0.93866 1.21160 0.93598 1.00879 0.99098 1.21126 0.98104 0.98222 0.98032 1.20961 0.98667 0.99590 0.95463 1.19610 0.94349 0.97529 0.97321 1.21069 1.02433 0.97800 0.96555 0.91258 0.92832 0.92616 0.92366 0.92676 0.94312 0.92652 0.89521 0.95442 0.92961 0.90658 0.92642 0.92319 0.91768 0.92574 0.89303 0.84914 0.85036 0.85189 0.86608 0.90323 0.93550 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.12 -3.88 5.93 30.60 0.18 -3.69 16 3 C -0.11 -4.50 5.53 30.60 0.17 -4.33 16 4 C 0.11 5.42 5.09 86.38 0.44 5.86 16 5 N -0.44 -21.56 2.48 -635.54 -1.58 -23.14 16 6 C -0.32 -15.20 5.96 84.04 0.50 -14.70 16 7 H 0.10 4.60 3.53 -2.91 -0.01 4.59 16 8 C 0.02 1.09 5.17 84.93 0.44 1.53 16 9 N -0.89 -47.25 11.32 21.66 0.25 -47.01 16 10 Si 0.94 38.58 29.57 68.60 2.03 40.60 16 11 H -0.23 -8.75 6.11 99.48 0.61 -8.14 16 12 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 14 C 0.48 22.98 4.45 87.66 0.39 23.37 16 15 O -0.64 -33.55 14.40 -3.08 -0.04 -33.60 16 16 C -0.03 -1.19 0.49 -53.68 -0.03 -1.21 16 17 C -0.13 -4.45 7.41 71.98 0.53 -3.91 16 18 C -0.14 -4.52 7.04 71.98 0.51 -4.01 16 19 C -0.03 -0.97 2.84 -19.87 -0.06 -1.02 16 20 C -0.11 -3.75 6.86 22.27 0.15 -3.60 16 21 C -0.13 -4.21 9.08 22.27 0.20 -4.01 16 22 C -0.14 -4.55 10.05 22.27 0.22 -4.33 16 23 C -0.13 -4.74 9.71 22.27 0.22 -4.53 16 24 C -0.09 -3.52 5.67 -19.86 -0.11 -3.63 16 25 C -0.12 -4.95 8.03 71.24 0.57 -4.38 16 26 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.09 4.53 5.62 -2.39 -0.01 4.51 16 34 H 0.03 1.42 7.27 -2.39 -0.02 1.41 16 35 H 0.26 13.48 8.31 -92.71 -0.77 12.71 16 36 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 37 H 0.05 1.89 8.12 -2.38 -0.02 1.87 16 38 H 0.06 2.18 4.55 -2.39 -0.01 2.17 16 39 H 0.06 2.23 5.34 -2.39 -0.01 2.22 16 40 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 41 H 0.09 2.33 7.19 -2.39 -0.02 2.31 16 42 H 0.13 4.03 5.74 -2.91 -0.02 4.01 16 43 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 45 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 46 H 0.08 2.73 7.26 -2.39 -0.02 2.71 16 47 H 0.05 1.86 8.09 -2.39 -0.02 1.85 16 48 H 0.06 3.01 3.43 -2.39 -0.01 3.00 16 Total: -1.00 -59.88 359.18 6.54 -53.33 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: 0.84 Total: 39.44 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 5.05 Total: -29.64 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -1.33 Total: -70.14 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.04 Total: -33.60 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.60 kcal Total: -59.88 6.54 -53.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182463876.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.703 kcal (2) G-P(sol) polarization free energy of solvation -59.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds