Wall clock time and date at job start Tue Mar 31 2020 09:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47312 * 2 1 4 4 C 1.52998 * 109.47312 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47416 * 180.02562 * 4 3 2 6 6 C 1.36873 * 120.00120 * 270.00161 * 5 4 3 7 7 H 1.07993 * 120.00317 * 139.32138 * 6 5 4 8 8 C 1.39056 * 120.00133 * 319.32861 * 6 5 4 9 9 N 1.31360 * 120.00107 * 161.49243 * 8 6 5 10 10 Si 1.86805 * 119.99720 * 341.49547 * 8 6 5 11 11 H 1.48498 * 109.47102 * 95.26655 * 10 8 6 12 12 H 1.48502 * 109.47017 * 215.26875 * 10 8 6 13 13 H 1.48498 * 109.47021 * 335.26378 * 10 8 6 14 14 C 1.34774 * 120.00192 * 90.00048 * 5 4 3 15 15 O 1.21593 * 119.99803 * 3.70522 * 14 5 4 16 16 C 1.47728 * 120.00175 * 183.70013 * 14 5 4 17 17 C 1.39649 * 120.14752 * 147.77500 * 16 14 5 18 18 C 1.37942 * 119.84207 * 180.02562 * 17 16 14 19 19 C 1.38373 * 120.15377 * 359.97438 * 18 17 16 20 20 C 1.50693 * 119.84727 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47543 * 89.99933 * 20 19 18 22 22 C 1.53004 * 109.46822 * 295.00009 * 21 20 19 23 23 C 1.52999 * 109.47180 * 175.00212 * 21 20 19 24 24 C 1.38378 * 120.30455 * 0.25456 * 19 18 17 25 25 C 1.37933 * 120.15131 * 359.49203 * 24 19 18 26 26 H 1.09001 * 109.47068 * 299.99498 * 1 2 3 27 27 H 1.09003 * 109.47456 * 59.99438 * 1 2 3 28 28 H 1.09002 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46670 * 240.00153 * 2 1 3 30 30 H 1.09003 * 109.47456 * 120.00562 * 2 1 3 31 31 H 1.08999 * 109.47128 * 60.00434 * 3 2 1 32 32 H 1.08995 * 109.47839 * 300.00275 * 3 2 1 33 33 H 1.09001 * 109.47068 * 60.00502 * 4 3 2 34 34 H 1.09003 * 109.47456 * 300.00562 * 4 3 2 35 35 H 0.97003 * 119.99742 * 180.02562 * 9 8 6 36 36 H 1.07995 * 120.07495 * 0.02562 * 17 16 14 37 37 H 1.08002 * 119.92018 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47126 * 329.99849 * 20 19 18 39 39 H 1.09001 * 109.47220 * 210.00060 * 20 19 18 40 40 H 1.09005 * 109.47092 * 54.99879 * 21 20 19 41 41 H 1.08995 * 109.47151 * 299.99992 * 22 21 20 42 42 H 1.08998 * 109.47174 * 60.00232 * 22 21 20 43 43 H 1.08997 * 109.46930 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.46506 * 180.02562 * 23 21 20 45 45 H 1.09003 * 109.47171 * 299.99439 * 23 21 20 46 46 H 1.08993 * 109.47175 * 60.00271 * 23 21 20 47 47 H 1.08001 * 119.92487 * 179.74798 * 24 19 18 48 48 H 1.08002 * 120.08111 * 180.25374 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2860 3.4696 -1.1851 7 1 4.0060 4.5065 -1.2974 8 6 4.8777 2.7906 -2.2446 9 7 4.7731 3.2611 -3.4666 10 14 5.8212 1.2093 -1.9301 11 1 4.9263 0.0458 -2.1552 12 1 6.9783 1.1305 -2.8576 13 1 6.3091 1.1946 -0.5277 14 6 4.2836 3.4583 1.1674 15 8 4.1461 2.8636 2.2190 16 6 4.6974 4.8764 1.1694 17 6 4.3079 5.7192 2.2125 18 6 4.6975 7.0425 2.2078 19 6 5.4729 7.5350 1.1729 20 6 5.8941 8.9819 1.1744 21 6 7.2314 9.1231 1.9042 22 6 7.0499 8.7529 3.3776 23 6 7.7201 10.5691 1.7981 24 6 5.8584 6.7066 0.1338 25 6 5.4803 5.3801 0.1285 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9338 0.9284 0.8891 35 1 5.1855 2.7872 -4.2057 36 1 3.7032 5.3359 3.0210 37 1 4.3967 7.6955 3.0137 38 1 5.1378 9.5800 1.6829 39 1 6.0023 9.3299 0.1471 40 1 7.9653 8.4573 1.4500 41 1 6.3161 9.4187 3.8318 42 1 6.7017 7.7228 3.4532 43 1 8.0027 8.8531 3.8974 44 1 8.6731 10.6695 2.3177 45 1 7.8494 10.8328 0.7484 46 1 6.9863 11.2348 2.2523 47 1 6.4602 7.0985 -0.6729 48 1 5.7853 4.7335 -0.6811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192474861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:03 Heat of formation + Delta-G solvation = -31.631949 kcal Electronic energy + Delta-G solvation = -25143.721424 eV Core-core repulsion = 21776.800754 eV Total energy + Delta-G solvation = -3366.920671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -39.61702 -38.27364 -35.97154 -35.44596 -34.12503 -31.96979 -31.18232 -30.39490 -28.61871 -27.15316 -26.47279 -24.97860 -23.55615 -21.90217 -21.53801 -20.72817 -19.87994 -19.16815 -17.63549 -16.32915 -15.60854 -15.37006 -14.88777 -14.76360 -14.59705 -14.28230 -14.17893 -13.81413 -13.38437 -13.26701 -13.09919 -12.80929 -12.59881 -12.51505 -12.35289 -12.20058 -11.97971 -11.81715 -11.67062 -11.42013 -11.34803 -11.15865 -10.80466 -10.71932 -10.65367 -10.62673 -10.54753 -10.44551 -10.25142 -10.01080 -9.78506 -9.23723 -8.66142 -8.30207 -8.01432 -7.78348 -6.54646 -4.15475 1.64118 2.05751 3.00663 3.17023 3.25596 3.70246 4.05658 4.28438 4.50412 4.84520 4.89824 4.94689 5.01403 5.34308 5.34816 5.37324 5.46520 5.50989 5.56045 5.60061 5.68166 5.70332 5.76998 5.82419 5.89017 5.92093 5.97595 6.09288 6.10339 6.11314 6.14443 6.21365 6.22913 6.28073 6.34415 6.37216 6.41216 6.48666 6.57213 6.70732 6.76882 6.88623 7.00564 7.16651 7.26823 7.31009 7.61393 8.00324 8.19170 8.85948 9.26801 9.61527 10.53513 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.003987 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.429743 B = 7021.663608 C = 7970.204890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.102 3.898 5 N -0.457 5.457 6 C -0.346 4.346 7 H 0.112 0.888 8 C 0.067 3.933 9 N -0.856 5.856 10 Si 0.873 3.127 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.260 1.260 14 C 0.520 3.480 15 O -0.595 6.595 16 C -0.106 4.106 17 C -0.078 4.078 18 C -0.139 4.139 19 C -0.075 4.075 20 C -0.074 4.074 21 C -0.092 4.092 22 C -0.150 4.150 23 C -0.146 4.146 24 C -0.138 4.138 25 C -0.063 4.063 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.276 0.724 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.117 0.883 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 6.754 6.104 9.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.021 4.021 5 N -0.176 5.176 6 C -0.473 4.473 7 H 0.129 0.871 8 C -0.141 4.141 9 N -0.490 5.490 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.184 1.184 14 C 0.310 3.690 15 O -0.481 6.481 16 C -0.109 4.109 17 C -0.097 4.097 18 C -0.157 4.157 19 C -0.075 4.075 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.208 4.208 23 C -0.204 4.204 24 C -0.156 4.156 25 C -0.081 4.081 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.135 0.865 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.975 6.422 6.372 9.099 hybrid contribution 0.411 -0.807 -0.226 0.934 sum 1.386 5.615 6.146 8.439 Atomic orbital electron populations 1.21740 0.96140 1.00890 1.01765 1.21480 0.95614 0.97430 1.01618 1.21844 0.95918 0.96026 1.02595 1.21654 0.94065 0.85232 1.01150 1.43581 1.56637 1.11728 1.05659 1.19198 1.40888 0.99274 0.87914 0.87109 1.25343 0.96017 0.98021 0.94673 1.69711 1.40470 1.40233 0.98609 0.86956 0.80101 0.83366 0.79495 1.19911 1.21350 1.18405 1.18334 0.79921 0.87028 0.83691 1.90622 1.57509 1.68178 1.31820 1.19904 1.00851 0.94091 0.96021 1.21121 0.98459 0.92920 0.97242 1.20743 1.00841 0.95286 0.98823 1.19887 0.97486 0.95354 0.94816 1.20657 0.96695 0.92925 1.00883 1.21082 0.96868 0.96731 0.96346 1.21920 1.01102 1.02324 0.95415 1.21851 1.00763 0.96209 1.01540 1.21020 1.01940 0.94207 0.98435 1.22411 0.93236 0.95332 0.97140 0.92923 0.92752 0.93264 0.92261 0.92267 0.92085 0.91137 0.91779 0.91211 0.91320 0.86176 0.86726 0.91423 0.91193 0.91018 0.92996 0.91713 0.93212 0.92885 0.92754 0.92841 0.86479 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.96 5.93 -26.74 -0.16 -2.12 16 3 C -0.13 -2.42 5.54 -26.74 -0.15 -2.57 16 4 C 0.10 2.25 4.20 -4.04 -0.02 2.23 16 5 N -0.46 -10.99 2.13 -115.93 -0.25 -11.24 16 6 C -0.35 -8.64 6.58 -15.00 -0.10 -8.74 16 7 H 0.11 2.93 6.38 -52.49 -0.34 2.60 16 8 C 0.07 1.70 5.32 -17.45 -0.09 1.61 16 9 N -0.86 -22.52 13.95 55.50 0.77 -21.74 16 10 Si 0.87 19.98 24.92 -169.99 -4.24 15.74 16 11 H -0.27 -6.01 6.73 56.52 0.38 -5.63 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.52 12.56 7.41 -12.38 -0.09 12.47 16 15 O -0.60 -15.37 16.32 5.28 0.09 -15.28 16 16 C -0.11 -2.28 5.52 -104.97 -0.58 -2.86 16 17 C -0.08 -1.47 9.61 -39.16 -0.38 -1.85 16 18 C -0.14 -2.19 7.93 -39.64 -0.31 -2.51 16 19 C -0.08 -1.15 4.72 -104.52 -0.49 -1.64 16 20 C -0.07 -0.89 4.83 -27.89 -0.13 -1.02 16 21 C -0.09 -1.00 2.91 -90.62 -0.26 -1.26 16 22 C -0.15 -1.63 8.75 37.16 0.33 -1.30 16 23 C -0.15 -1.32 9.19 37.16 0.34 -0.97 16 24 C -0.14 -2.38 9.68 -39.64 -0.38 -2.76 16 25 C -0.06 -1.29 7.75 -39.17 -0.30 -1.59 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.06 1.43 3.39 -51.93 -0.18 1.26 16 34 H 0.07 1.55 7.37 -51.93 -0.38 1.16 16 35 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.12 2.20 7.96 -52.49 -0.42 1.78 16 37 H 0.11 1.51 8.03 -52.49 -0.42 1.09 16 38 H 0.07 0.74 8.08 -51.93 -0.42 0.33 16 39 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.81 6.26 -51.93 -0.33 0.48 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 48 H 0.16 3.68 5.40 -52.49 -0.28 3.40 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -27.69 377.23 -8.62 -36.31 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -8.26 Total: 7.05 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -2.42 Total: -16.52 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.53 Total: -32.98 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.09 Total: -15.28 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.24 Total: 15.74 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.69 -8.62 -36.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192474861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.676 kcal (2) G-P(sol) polarization free energy of solvation -27.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds