Wall clock time and date at job start Tue Mar 31 2020 09:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47312 * 2 1 4 4 C 1.52998 * 109.47312 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47416 * 180.02562 * 4 3 2 6 6 C 1.36873 * 120.00120 * 270.00161 * 5 4 3 7 7 H 1.07993 * 120.00317 * 139.32138 * 6 5 4 8 8 C 1.39056 * 120.00133 * 319.32861 * 6 5 4 9 9 N 1.31360 * 120.00107 * 161.49243 * 8 6 5 10 10 Si 1.86805 * 119.99720 * 341.49547 * 8 6 5 11 11 H 1.48498 * 109.47102 * 95.26655 * 10 8 6 12 12 H 1.48502 * 109.47017 * 215.26875 * 10 8 6 13 13 H 1.48498 * 109.47021 * 335.26378 * 10 8 6 14 14 C 1.34774 * 120.00192 * 90.00048 * 5 4 3 15 15 O 1.21593 * 119.99803 * 3.70522 * 14 5 4 16 16 C 1.47728 * 120.00175 * 183.70013 * 14 5 4 17 17 C 1.39649 * 120.14752 * 147.77500 * 16 14 5 18 18 C 1.37942 * 119.84207 * 180.02562 * 17 16 14 19 19 C 1.38373 * 120.15377 * 359.97438 * 18 17 16 20 20 C 1.50693 * 119.84727 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47543 * 89.99933 * 20 19 18 22 22 C 1.53004 * 109.46822 * 295.00009 * 21 20 19 23 23 C 1.52999 * 109.47180 * 175.00212 * 21 20 19 24 24 C 1.38378 * 120.30455 * 0.25456 * 19 18 17 25 25 C 1.37933 * 120.15131 * 359.49203 * 24 19 18 26 26 H 1.09001 * 109.47068 * 299.99498 * 1 2 3 27 27 H 1.09003 * 109.47456 * 59.99438 * 1 2 3 28 28 H 1.09002 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46670 * 240.00153 * 2 1 3 30 30 H 1.09003 * 109.47456 * 120.00562 * 2 1 3 31 31 H 1.08999 * 109.47128 * 60.00434 * 3 2 1 32 32 H 1.08995 * 109.47839 * 300.00275 * 3 2 1 33 33 H 1.09001 * 109.47068 * 60.00502 * 4 3 2 34 34 H 1.09003 * 109.47456 * 300.00562 * 4 3 2 35 35 H 0.97003 * 119.99742 * 180.02562 * 9 8 6 36 36 H 1.07995 * 120.07495 * 0.02562 * 17 16 14 37 37 H 1.08002 * 119.92018 * 179.97438 * 18 17 16 38 38 H 1.09000 * 109.47126 * 329.99849 * 20 19 18 39 39 H 1.09001 * 109.47220 * 210.00060 * 20 19 18 40 40 H 1.09005 * 109.47092 * 54.99879 * 21 20 19 41 41 H 1.08995 * 109.47151 * 299.99992 * 22 21 20 42 42 H 1.08998 * 109.47174 * 60.00232 * 22 21 20 43 43 H 1.08997 * 109.46930 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.46506 * 180.02562 * 23 21 20 45 45 H 1.09003 * 109.47171 * 299.99439 * 23 21 20 46 46 H 1.08993 * 109.47175 * 60.00271 * 23 21 20 47 47 H 1.08001 * 119.92487 * 179.74798 * 24 19 18 48 48 H 1.08002 * 120.08111 * 180.25374 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2860 3.4696 -1.1851 7 1 4.0060 4.5065 -1.2974 8 6 4.8777 2.7906 -2.2446 9 7 4.7731 3.2611 -3.4666 10 14 5.8212 1.2093 -1.9301 11 1 4.9263 0.0458 -2.1552 12 1 6.9783 1.1305 -2.8576 13 1 6.3091 1.1946 -0.5277 14 6 4.2836 3.4583 1.1674 15 8 4.1461 2.8636 2.2190 16 6 4.6974 4.8764 1.1694 17 6 4.3079 5.7192 2.2125 18 6 4.6975 7.0425 2.2078 19 6 5.4729 7.5350 1.1729 20 6 5.8941 8.9819 1.1744 21 6 7.2314 9.1231 1.9042 22 6 7.0499 8.7529 3.3776 23 6 7.7201 10.5691 1.7981 24 6 5.8584 6.7066 0.1338 25 6 5.4803 5.3801 0.1285 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 3.9329 0.9288 -0.8909 34 1 3.9338 0.9284 0.8891 35 1 5.1855 2.7872 -4.2057 36 1 3.7032 5.3359 3.0210 37 1 4.3967 7.6955 3.0137 38 1 5.1378 9.5800 1.6829 39 1 6.0023 9.3299 0.1471 40 1 7.9653 8.4573 1.4500 41 1 6.3161 9.4187 3.8318 42 1 6.7017 7.7228 3.4532 43 1 8.0027 8.8531 3.8974 44 1 8.6731 10.6695 2.3177 45 1 7.8494 10.8328 0.7484 46 1 6.9863 11.2348 2.2523 47 1 6.4602 7.0985 -0.6729 48 1 5.7853 4.7335 -0.6811 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192474861.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:02 Heat of formation + Delta-G solvation = -43.718148 kcal Electronic energy + Delta-G solvation = -25144.245521 eV Core-core repulsion = 21776.800754 eV Total energy + Delta-G solvation = -3367.444768 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29465 -39.75972 -37.41401 -36.87809 -35.68536 -33.89597 -32.49377 -31.83657 -30.08181 -27.98510 -27.72073 -26.82865 -25.01693 -23.35414 -22.94153 -22.15930 -21.04931 -20.73047 -19.42380 -18.14339 -17.27184 -16.74848 -16.34300 -16.27451 -16.16052 -15.74633 -15.20244 -15.10696 -14.98482 -14.72772 -14.46881 -14.43310 -14.13389 -13.97161 -13.65505 -13.38014 -13.22332 -13.06188 -12.95320 -12.92009 -12.71548 -12.46376 -12.21166 -12.12714 -11.98835 -11.83410 -11.81975 -11.62751 -11.56305 -11.48616 -11.42338 -11.09748 -10.54720 -9.84342 -9.62446 -9.45975 -8.52442 -6.14737 0.14014 0.61074 1.15033 1.28096 1.38194 1.95074 2.14062 2.53245 2.81176 3.12084 3.83911 3.87888 3.97026 4.00354 4.12619 4.14494 4.17545 4.22207 4.24918 4.31030 4.44961 4.50150 4.61935 4.64774 4.72086 4.82587 4.84653 4.89140 4.89608 4.90552 5.01668 5.02223 5.12374 5.13061 5.17258 5.19024 5.26094 5.31048 5.37079 5.39038 5.46442 5.49110 5.54038 5.58189 5.72660 5.78849 6.02738 6.15532 6.23358 6.89413 7.32774 7.69769 8.59075 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.003987 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.429743 B = 7021.663608 C = 7970.204890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.095 3.905 5 N -0.466 5.466 6 C -0.336 4.336 7 H 0.090 0.910 8 C 0.039 3.961 9 N -0.887 5.887 10 Si 0.916 3.084 11 H -0.255 1.255 12 H -0.280 1.280 13 H -0.276 1.276 14 C 0.512 3.488 15 O -0.620 6.620 16 C -0.141 4.141 17 C -0.084 4.084 18 C -0.126 4.126 19 C -0.058 4.058 20 C -0.072 4.072 21 C -0.090 4.090 22 C -0.151 4.151 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.078 4.078 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.281 0.719 36 H 0.120 0.880 37 H 0.150 0.850 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.134 0.866 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 8.171 6.941 10.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C -0.154 4.154 4 C -0.027 4.027 5 N -0.185 5.185 6 C -0.463 4.463 7 H 0.107 0.893 8 C -0.167 4.167 9 N -0.524 5.524 10 Si 0.743 3.257 11 H -0.181 1.181 12 H -0.206 1.206 13 H -0.201 1.201 14 C 0.303 3.697 15 O -0.508 6.508 16 C -0.144 4.144 17 C -0.103 4.103 18 C -0.144 4.144 19 C -0.058 4.058 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.208 4.208 23 C -0.199 4.199 24 C -0.159 4.159 25 C -0.096 4.096 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.168 0.832 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.152 0.848 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.936 7.832 7.194 10.676 hybrid contribution 0.458 -1.109 -0.407 1.267 sum 1.394 6.723 6.787 9.654 Atomic orbital electron populations 1.21712 0.94060 1.02518 1.01847 1.21482 0.97432 0.94697 1.02219 1.21753 0.93875 0.98467 1.01333 1.21794 0.95941 0.84238 1.00714 1.43718 1.56923 1.12445 1.05394 1.18960 1.40602 0.98569 0.88176 0.89272 1.25714 0.96413 1.00159 0.94376 1.69750 1.41749 1.41652 0.99224 0.86278 0.79561 0.81550 0.78359 1.18117 1.20632 1.20087 1.18866 0.79238 0.88260 0.83295 1.90573 1.58715 1.69091 1.32414 1.19877 1.03237 0.93243 0.98055 1.21245 0.98664 0.94031 0.96406 1.21092 0.99515 0.94254 0.99557 1.20293 0.95328 0.96998 0.93208 1.20755 0.97809 0.90255 1.02110 1.21062 0.95807 0.97956 0.96068 1.21926 1.01962 1.01358 0.95572 1.21808 1.01322 0.94705 1.02097 1.21214 1.01939 0.93036 0.99688 1.22127 0.94442 0.96585 0.96457 0.92733 0.92849 0.90847 0.91869 0.91448 0.93096 0.92507 0.91978 0.91627 0.90849 0.86180 0.83201 0.89412 0.90249 0.92341 0.91525 0.93699 0.92486 0.92264 0.92360 0.91777 0.84819 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.12 -3.70 5.93 30.59 0.18 -3.52 16 3 C -0.12 -4.55 5.54 30.59 0.17 -4.38 16 4 C 0.10 4.32 4.20 86.38 0.36 4.68 16 5 N -0.47 -23.32 2.13 -638.94 -1.36 -24.68 16 6 C -0.34 -17.51 6.58 84.10 0.55 -16.95 16 7 H 0.09 4.99 6.38 -2.91 -0.02 4.97 16 8 C 0.04 2.00 5.32 84.96 0.45 2.45 16 9 N -0.89 -47.74 13.95 21.68 0.30 -47.44 16 10 Si 0.92 41.73 24.92 68.60 1.71 43.44 16 11 H -0.26 -10.87 6.73 99.48 0.67 -10.20 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 C 0.51 25.80 7.41 86.75 0.64 26.44 16 15 O -0.62 -33.17 16.32 -4.01 -0.07 -33.24 16 16 C -0.14 -6.30 5.52 -20.09 -0.11 -6.42 16 17 C -0.08 -3.17 9.61 22.54 0.22 -2.95 16 18 C -0.13 -3.74 7.93 22.23 0.18 -3.56 16 19 C -0.06 -1.65 4.72 -19.80 -0.09 -1.75 16 20 C -0.07 -1.48 4.83 29.85 0.14 -1.33 16 21 C -0.09 -1.70 2.91 -10.79 -0.03 -1.73 16 22 C -0.15 -2.82 8.75 71.98 0.63 -2.19 16 23 C -0.14 -2.06 9.19 71.98 0.66 -1.39 16 24 C -0.14 -4.81 9.68 22.23 0.22 -4.60 16 25 C -0.08 -3.29 7.75 22.54 0.17 -3.12 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.06 2.80 3.39 -2.39 -0.01 2.80 16 34 H 0.07 2.98 7.37 -2.39 -0.02 2.97 16 35 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.12 4.43 7.96 -2.91 -0.02 4.41 16 37 H 0.15 3.39 8.03 -2.91 -0.02 3.37 16 38 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 39 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 40 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.04 1.01 6.26 -2.39 -0.01 1.00 16 43 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 48 H 0.14 6.49 5.40 -2.91 -0.02 6.47 16 Total: -1.00 -61.74 377.23 6.52 -55.21 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.88 Total: 29.97 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: 5.06 Total: -23.26 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -1.06 Total: -72.12 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.07 Total: -33.24 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.71 Total: 43.44 kcal Total: -61.74 6.52 -55.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192474861.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.496 kcal (2) G-P(sol) polarization free energy of solvation -61.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds