Wall clock time and date at job start Tue Mar 31 2020 08:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99500 * 2 1 4 4 C 1.53003 * 109.47293 * 60.00430 * 3 2 1 5 5 C 1.53001 * 109.47559 * 300.00302 * 3 2 1 6 6 C 1.53008 * 109.46998 * 180.02562 * 3 2 1 7 7 H 1.08999 * 110.42178 * 178.56703 * 6 3 2 8 8 C 1.54903 * 110.37081 * 300.88006 * 6 3 2 9 9 C 1.55138 * 101.65230 * 155.89883 * 8 6 3 10 10 C 1.54318 * 103.01918 * 324.34337 * 9 8 6 11 11 N 1.47441 * 107.23175 * 22.28592 * 10 9 8 12 12 C 1.46903 * 111.00385 * 123.25371 * 11 10 9 13 13 C 1.50704 * 109.46920 * 62.11238 * 12 11 10 14 14 C 1.37642 * 120.12615 * 254.20103 * 13 12 11 15 15 C 1.38618 * 120.24647 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.50093 * 0.02562 * 15 14 13 17 17 C 1.37597 * 120.24784 * 359.97438 * 16 15 14 18 18 C 1.40694 * 120.12958 * 74.16786 * 13 12 11 19 19 C 1.41398 * 120.24098 * 0.02562 * 18 13 12 20 20 H 1.07999 * 120.00385 * 322.91560 * 19 18 13 21 21 C 1.39956 * 119.99964 * 142.91232 * 19 18 13 22 22 N 1.30820 * 119.99623 * 351.09838 * 21 19 18 23 23 Si 1.86797 * 119.99823 * 171.09700 * 21 19 18 24 24 H 1.48493 * 109.47528 * 59.99964 * 23 21 19 25 25 H 1.48502 * 109.46932 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47305 * 299.99876 * 23 21 19 27 27 H 1.09006 * 109.46764 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47328 * 299.99184 * 1 2 3 29 29 H 1.08997 * 109.47918 * 59.99867 * 1 2 3 30 30 H 1.09005 * 109.46802 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.46744 * 299.99563 * 4 3 2 32 32 H 1.08999 * 109.47041 * 59.99481 * 4 3 2 33 33 H 1.09006 * 109.47000 * 306.37893 * 5 3 2 34 34 H 1.09002 * 109.47013 * 66.37638 * 5 3 2 35 35 H 1.08998 * 109.47514 * 186.37968 * 5 3 2 36 36 H 1.09003 * 110.99463 * 37.80802 * 8 6 3 37 37 H 1.09000 * 110.98881 * 273.99133 * 8 6 3 38 38 H 1.08998 * 110.70492 * 205.96508 * 9 8 6 39 39 H 1.09004 * 110.70625 * 82.72773 * 9 8 6 40 40 H 1.08994 * 109.88996 * 262.87606 * 10 9 8 41 41 H 1.09004 * 110.01992 * 141.75898 * 10 9 8 42 42 H 1.09005 * 109.47188 * 302.11596 * 12 11 10 43 43 H 1.08993 * 109.47445 * 182.11090 * 12 11 10 44 44 H 1.07993 * 119.87550 * 0.24978 * 14 13 12 45 45 H 1.07996 * 119.74591 * 179.97438 * 15 14 13 46 46 H 1.07998 * 119.87738 * 179.97438 * 16 15 14 47 47 H 1.08002 * 120.12607 * 180.02562 * 17 16 15 48 48 H 0.97007 * 119.99639 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5586 2.0648 -1.2492 6 6 3.5354 1.1847 -0.0006 7 1 3.9951 2.1727 -0.0262 8 6 4.0147 0.3990 1.2453 9 6 5.3850 -0.1462 0.7640 10 6 5.1349 -0.4459 -0.7290 11 7 3.9873 0.3768 -1.1534 12 6 4.3467 1.2357 -2.2896 13 6 4.7319 0.3768 -3.4665 14 6 6.0537 0.2575 -3.8314 15 6 6.4109 -0.5323 -4.9131 16 6 5.4437 -1.2099 -5.6396 17 6 4.1162 -1.1052 -5.2928 18 6 3.7420 -0.3068 -4.1960 19 6 2.3810 -0.1918 -3.8303 20 1 2.1047 -0.1375 -2.7876 21 6 1.3918 -0.1482 -4.8194 22 7 1.7302 -0.0381 -6.0783 23 14 -0.4114 -0.2474 -4.3420 24 1 -0.7495 0.8878 -3.4464 25 1 -1.2515 -0.1811 -5.5648 26 1 -0.6668 -1.5284 -3.6355 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 2.0024 3.0604 1.2495 31 1 0.4721 2.1507 1.2493 32 1 1.8804 1.5237 2.1392 33 1 1.7795 1.4700 -2.1356 34 1 0.4858 2.2499 -1.1939 35 1 2.0888 3.0153 -1.3081 36 1 3.3305 -0.4166 1.4797 37 1 4.1372 1.0621 2.1017 38 1 5.6474 -1.0576 1.3012 39 1 6.1626 0.6087 0.8806 40 1 4.9028 -1.5026 -0.8613 41 1 6.0159 -0.1836 -1.3150 42 1 5.1879 1.8713 -2.0129 43 1 3.4936 1.8587 -2.5583 44 1 6.8158 0.7776 -3.2701 45 1 7.4504 -0.6198 -5.1926 46 1 5.7332 -1.8221 -6.4809 47 1 3.3645 -1.6342 -5.8598 48 1 1.0446 -0.0083 -6.7640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235522705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:31 Heat of formation + Delta-G solvation = -21.575873 kcal Electronic energy + Delta-G solvation = -27138.927833 eV Core-core repulsion = 23772.443227 eV Total energy + Delta-G solvation = -3366.484607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -39.66685 -37.75559 -36.79286 -33.42309 -32.51555 -32.32019 -29.44927 -29.11033 -27.86074 -27.00524 -26.27038 -25.33955 -24.15216 -21.23871 -20.88746 -20.66540 -19.19614 -19.14392 -16.99133 -16.11607 -15.97171 -15.29723 -14.88746 -14.70318 -14.55410 -14.12117 -13.82830 -13.43349 -13.13734 -13.04506 -12.74891 -12.46311 -12.16734 -12.14113 -12.10810 -11.86163 -11.68315 -11.50173 -11.32841 -11.11818 -11.01690 -10.95219 -10.88605 -10.68112 -10.49668 -10.35328 -10.21711 -10.04445 -9.77081 -9.40078 -9.19266 -9.04457 -9.00526 -7.47496 -7.29306 -7.06583 -6.54904 -4.19029 2.88456 3.02287 3.14736 3.18206 3.30671 4.08169 4.19987 4.51488 4.82335 4.94428 5.06471 5.22507 5.36719 5.43239 5.47723 5.62079 5.68549 5.72790 5.77226 5.80248 5.88316 5.93535 6.01847 6.03709 6.09032 6.15951 6.19485 6.21256 6.23231 6.30367 6.36579 6.46106 6.53397 6.54481 6.58495 6.72378 6.87132 7.05630 7.24539 7.37720 7.48089 7.65782 7.72135 7.76630 7.92867 8.02960 8.12717 8.33818 8.44083 8.86231 9.08769 9.15352 10.44118 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.008231 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.295297 B = 3400.901002 C = 5329.635654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.350 6.350 3 C 0.132 3.868 4 C -0.178 4.178 5 C -0.199 4.199 6 C 0.086 3.914 7 H 0.056 0.944 8 C -0.119 4.119 9 C -0.143 4.143 10 C 0.052 3.948 11 N -0.493 5.493 12 C 0.114 3.886 13 C -0.182 4.182 14 C -0.094 4.094 15 C -0.235 4.235 16 C -0.111 4.111 17 C -0.150 4.150 18 C 0.138 3.862 19 C -0.455 4.455 20 H 0.106 0.894 21 C 0.073 3.927 22 N -0.815 5.815 23 Si 0.896 3.104 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.078 0.922 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.010 0.990 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 3.131 12.006 12.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.268 6.268 3 C 0.092 3.908 4 C -0.236 4.236 5 C -0.256 4.256 6 C -0.023 4.023 7 H 0.074 0.926 8 C -0.157 4.157 9 C -0.182 4.182 10 C -0.076 4.076 11 N -0.216 5.216 12 C -0.013 4.013 13 C -0.184 4.184 14 C -0.113 4.113 15 C -0.255 4.255 16 C -0.130 4.130 17 C -0.170 4.170 18 C 0.135 3.865 19 C -0.486 4.486 20 H 0.124 0.876 21 C -0.142 4.142 22 N -0.442 5.442 23 Si 0.721 3.279 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.189 1.189 27 H 0.097 0.903 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.028 0.972 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.126 0.874 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.734 2.675 11.593 11.920 hybrid contribution -0.411 0.817 0.145 0.926 sum -1.145 3.492 11.738 12.300 Atomic orbital electron populations 1.22737 0.83109 1.02049 0.99389 1.88088 1.17721 1.26321 1.94685 1.21261 0.92760 0.83510 0.93253 1.22462 1.01525 1.00735 0.98902 1.22836 1.00250 1.01135 1.01347 1.22485 0.92601 0.95855 0.91341 0.92572 1.22675 0.96685 1.00017 0.96312 1.22811 0.97076 1.00665 0.97604 1.22688 0.92935 0.99288 0.92719 1.63450 1.32408 1.21685 1.04103 1.21001 0.97985 0.93126 0.89141 1.19610 0.92988 1.04718 1.01043 1.20399 0.94695 0.99054 0.97104 1.20311 0.96858 1.07041 1.01274 1.20673 0.94157 0.99740 0.98412 1.21269 0.93720 1.01317 1.00680 1.17366 0.92740 0.87133 0.89268 1.19868 0.90107 1.43407 0.95187 0.87602 1.25867 1.00782 0.92969 0.94581 1.69794 1.35445 1.38133 1.00827 0.86584 0.82755 0.80019 0.78520 1.19047 1.20988 1.18868 0.90306 0.94865 0.94056 0.92025 0.92399 0.91965 0.87067 0.93457 0.92696 0.89801 0.91996 0.91415 0.92358 0.91048 0.92640 0.97179 0.90012 0.90025 0.89844 0.89754 0.87423 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.21 101.05 1.03 1.39 16 2 O -0.35 -6.06 9.34 -35.23 -0.33 -6.39 16 3 C 0.13 2.05 0.60 -90.61 -0.05 1.99 16 4 C -0.18 -2.19 8.03 37.16 0.30 -1.89 16 5 C -0.20 -3.35 6.66 37.16 0.25 -3.10 16 6 C 0.09 1.35 1.90 -66.18 -0.13 1.22 16 7 H 0.06 0.85 7.81 -51.93 -0.41 0.44 16 8 C -0.12 -1.62 5.35 -24.60 -0.13 -1.76 16 9 C -0.14 -1.96 6.94 -24.91 -0.17 -2.14 16 10 C 0.05 0.89 6.32 -2.84 -0.02 0.88 16 11 N -0.49 -9.18 3.77 -224.81 -0.85 -10.02 16 12 C 0.11 2.31 3.66 -4.97 -0.02 2.29 16 13 C -0.18 -4.24 4.68 -103.91 -0.49 -4.72 16 14 C -0.09 -2.08 8.59 -39.66 -0.34 -2.43 16 15 C -0.24 -5.32 10.05 -39.29 -0.39 -5.71 16 16 C -0.11 -2.65 10.02 -39.66 -0.40 -3.04 16 17 C -0.15 -3.92 8.62 -38.87 -0.34 -4.26 16 18 C 0.14 3.56 5.44 -106.83 -0.58 2.98 16 19 C -0.46 -11.65 7.21 -37.74 -0.27 -11.92 16 20 H 0.11 2.67 5.06 -52.49 -0.27 2.41 16 21 C 0.07 1.83 5.25 -17.34 -0.09 1.74 16 22 N -0.81 -21.43 11.34 55.55 0.63 -20.80 16 23 Si 0.90 19.20 29.57 -169.99 -5.03 14.18 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.03 0.41 6.42 -51.93 -0.33 0.08 16 29 H 0.04 0.65 6.56 -51.93 -0.34 0.31 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 32 H 0.06 0.72 7.21 -51.93 -0.37 0.34 16 33 H 0.11 2.26 3.53 -51.93 -0.18 2.08 16 34 H 0.05 0.75 6.90 -51.93 -0.36 0.39 16 35 H 0.05 0.84 8.01 -51.93 -0.42 0.43 16 36 H 0.08 1.24 7.38 -51.93 -0.38 0.85 16 37 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 1.00 6.21 -51.93 -0.32 0.67 16 42 H 0.01 0.19 7.94 -51.93 -0.41 -0.22 16 43 H 0.08 1.73 4.91 -51.93 -0.25 1.47 16 44 H 0.08 1.63 7.92 -52.49 -0.42 1.21 16 45 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 47 H 0.11 2.92 6.82 -52.49 -0.36 2.57 16 48 H 0.27 6.75 8.30 -40.82 -0.34 6.42 16 LS Contribution 357.22 15.07 5.38 5.38 Total: -1.00 -27.09 357.22 -9.70 -36.79 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -7.67 Total: 9.34 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: -1.84 Total: -28.48 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: -0.22 Total: -30.82 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.33 Total: -6.39 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.09 -9.70 -36.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.218 kcal (2) G-P(sol) polarization free energy of solvation -27.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds