Wall clock time and date at job start Tue Mar 31 2020 08:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99500 * 2 1 4 4 C 1.53003 * 109.47293 * 60.00430 * 3 2 1 5 5 C 1.53001 * 109.47559 * 300.00302 * 3 2 1 6 6 C 1.53008 * 109.46998 * 180.02562 * 3 2 1 7 7 H 1.08999 * 110.42178 * 178.56703 * 6 3 2 8 8 C 1.54903 * 110.37081 * 300.88006 * 6 3 2 9 9 C 1.55138 * 101.65230 * 155.89883 * 8 6 3 10 10 C 1.54318 * 103.01918 * 324.34337 * 9 8 6 11 11 N 1.47441 * 107.23175 * 22.28592 * 10 9 8 12 12 C 1.46903 * 111.00385 * 123.25371 * 11 10 9 13 13 C 1.50704 * 109.46920 * 62.11238 * 12 11 10 14 14 C 1.37642 * 120.12615 * 254.20103 * 13 12 11 15 15 C 1.38618 * 120.24647 * 179.97438 * 14 13 12 16 16 C 1.38657 * 120.50093 * 0.02562 * 15 14 13 17 17 C 1.37597 * 120.24784 * 359.97438 * 16 15 14 18 18 C 1.40694 * 120.12958 * 74.16786 * 13 12 11 19 19 C 1.41398 * 120.24098 * 0.02562 * 18 13 12 20 20 H 1.07999 * 120.00385 * 322.91560 * 19 18 13 21 21 C 1.39956 * 119.99964 * 142.91232 * 19 18 13 22 22 N 1.30820 * 119.99623 * 351.09838 * 21 19 18 23 23 Si 1.86797 * 119.99823 * 171.09700 * 21 19 18 24 24 H 1.48493 * 109.47528 * 59.99964 * 23 21 19 25 25 H 1.48502 * 109.46932 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47305 * 299.99876 * 23 21 19 27 27 H 1.09006 * 109.46764 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47328 * 299.99184 * 1 2 3 29 29 H 1.08997 * 109.47918 * 59.99867 * 1 2 3 30 30 H 1.09005 * 109.46802 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.46744 * 299.99563 * 4 3 2 32 32 H 1.08999 * 109.47041 * 59.99481 * 4 3 2 33 33 H 1.09006 * 109.47000 * 306.37893 * 5 3 2 34 34 H 1.09002 * 109.47013 * 66.37638 * 5 3 2 35 35 H 1.08998 * 109.47514 * 186.37968 * 5 3 2 36 36 H 1.09003 * 110.99463 * 37.80802 * 8 6 3 37 37 H 1.09000 * 110.98881 * 273.99133 * 8 6 3 38 38 H 1.08998 * 110.70492 * 205.96508 * 9 8 6 39 39 H 1.09004 * 110.70625 * 82.72773 * 9 8 6 40 40 H 1.08994 * 109.88996 * 262.87606 * 10 9 8 41 41 H 1.09004 * 110.01992 * 141.75898 * 10 9 8 42 42 H 1.09005 * 109.47188 * 302.11596 * 12 11 10 43 43 H 1.08993 * 109.47445 * 182.11090 * 12 11 10 44 44 H 1.07993 * 119.87550 * 0.24978 * 14 13 12 45 45 H 1.07996 * 119.74591 * 179.97438 * 15 14 13 46 46 H 1.07998 * 119.87738 * 179.97438 * 16 15 14 47 47 H 1.08002 * 120.12607 * 180.02562 * 17 16 15 48 48 H 0.97007 * 119.99639 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0647 1.2493 5 6 1.5586 2.0648 -1.2492 6 6 3.5354 1.1847 -0.0006 7 1 3.9951 2.1727 -0.0262 8 6 4.0147 0.3990 1.2453 9 6 5.3850 -0.1462 0.7640 10 6 5.1349 -0.4459 -0.7290 11 7 3.9873 0.3768 -1.1534 12 6 4.3467 1.2357 -2.2896 13 6 4.7319 0.3768 -3.4665 14 6 6.0537 0.2575 -3.8314 15 6 6.4109 -0.5323 -4.9131 16 6 5.4437 -1.2099 -5.6396 17 6 4.1162 -1.1052 -5.2928 18 6 3.7420 -0.3068 -4.1960 19 6 2.3810 -0.1918 -3.8303 20 1 2.1047 -0.1375 -2.7876 21 6 1.3918 -0.1482 -4.8194 22 7 1.7302 -0.0381 -6.0783 23 14 -0.4114 -0.2474 -4.3420 24 1 -0.7495 0.8878 -3.4464 25 1 -1.2515 -0.1811 -5.5648 26 1 -0.6668 -1.5284 -3.6355 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3635 0.5138 -0.8899 30 1 2.0024 3.0604 1.2495 31 1 0.4721 2.1507 1.2493 32 1 1.8804 1.5237 2.1392 33 1 1.7795 1.4700 -2.1356 34 1 0.4858 2.2499 -1.1939 35 1 2.0888 3.0153 -1.3081 36 1 3.3305 -0.4166 1.4797 37 1 4.1372 1.0621 2.1017 38 1 5.6474 -1.0576 1.3012 39 1 6.1626 0.6087 0.8806 40 1 4.9028 -1.5026 -0.8613 41 1 6.0159 -0.1836 -1.3150 42 1 5.1879 1.8713 -2.0129 43 1 3.4936 1.8587 -2.5583 44 1 6.8158 0.7776 -3.2701 45 1 7.4504 -0.6198 -5.1926 46 1 5.7332 -1.8221 -6.4809 47 1 3.3645 -1.6342 -5.8598 48 1 1.0446 -0.0083 -6.7640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235522705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:23 Heat of formation + Delta-G solvation = -35.227243 kcal Electronic energy + Delta-G solvation = -27139.519801 eV Core-core repulsion = 23772.443227 eV Total energy + Delta-G solvation = -3367.076574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 13.84 seconds Orbital eigenvalues (eV) -40.96266 -39.38907 -38.19943 -35.31433 -33.93805 -33.59360 -31.31889 -30.71488 -29.09499 -28.16193 -27.45619 -27.12587 -25.77284 -22.77903 -22.47502 -22.04635 -20.79871 -20.39869 -18.88221 -17.40511 -17.29578 -16.95039 -16.31750 -16.16283 -15.88942 -15.61742 -15.53293 -14.99764 -14.44384 -14.28746 -14.18606 -14.04674 -13.69527 -13.51234 -13.35295 -13.21607 -13.14953 -12.88618 -12.74850 -12.72124 -12.69622 -12.44785 -12.18229 -12.06540 -11.94840 -11.87080 -11.51941 -11.40706 -11.23977 -11.05069 -10.98328 -10.90092 -10.22568 -9.16804 -9.00834 -8.80625 -8.44595 -6.14591 1.05425 1.15963 1.36554 1.45818 1.52787 2.27713 2.89971 3.04202 3.24344 3.77441 3.81407 3.97852 4.10521 4.23301 4.29383 4.33814 4.41678 4.48134 4.51304 4.54526 4.59040 4.63567 4.70903 4.72846 4.74663 4.81372 4.88587 4.96588 4.98394 5.01700 5.05639 5.13233 5.16846 5.20729 5.26716 5.33030 5.36861 5.45911 5.53151 5.59098 5.68366 5.87344 6.06328 6.21303 6.37197 6.42294 6.48465 6.57186 6.67166 6.92898 7.17562 7.22929 8.55894 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.011397 B = 0.008231 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.295297 B = 3400.901002 C = 5329.635654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.376 6.376 3 C 0.130 3.870 4 C -0.171 4.171 5 C -0.197 4.197 6 C 0.081 3.919 7 H 0.067 0.933 8 C -0.110 4.110 9 C -0.132 4.132 10 C 0.049 3.951 11 N -0.512 5.512 12 C 0.124 3.876 13 C -0.182 4.182 14 C -0.099 4.099 15 C -0.233 4.233 16 C -0.120 4.120 17 C -0.181 4.181 18 C 0.107 3.893 19 C -0.467 4.467 20 H 0.105 0.895 21 C 0.033 3.967 22 N -0.851 5.851 23 Si 0.951 3.049 24 H -0.253 1.253 25 H -0.281 1.281 26 H -0.265 1.265 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 4.358 14.746 15.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.295 6.295 3 C 0.090 3.910 4 C -0.228 4.228 5 C -0.254 4.254 6 C -0.027 4.027 7 H 0.085 0.915 8 C -0.147 4.147 9 C -0.170 4.170 10 C -0.079 4.079 11 N -0.235 5.235 12 C -0.003 4.003 13 C -0.184 4.184 14 C -0.117 4.117 15 C -0.252 4.252 16 C -0.138 4.138 17 C -0.200 4.200 18 C 0.104 3.896 19 C -0.498 4.498 20 H 0.123 0.877 21 C -0.178 4.178 22 N -0.480 5.480 23 Si 0.774 3.226 24 H -0.177 1.177 25 H -0.206 1.206 26 H -0.190 1.190 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.120 0.880 47 H 0.101 0.899 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.061 3.905 14.347 14.869 hybrid contribution -0.497 0.422 -0.722 0.973 sum -0.558 4.327 13.625 14.307 Atomic orbital electron populations 1.22830 0.82166 1.02584 0.99959 1.88048 1.18954 1.27674 1.94864 1.21379 0.92614 0.83038 0.93990 1.22382 1.02050 1.01070 0.97316 1.22776 1.00740 1.01147 1.00776 1.22639 0.92882 0.96197 0.90978 0.91518 1.22634 0.95972 0.99854 0.96280 1.22753 0.97724 1.01880 0.94670 1.22637 0.92106 0.97658 0.95466 1.63292 1.33031 1.22245 1.04968 1.20822 0.97817 0.92692 0.88942 1.20000 0.93086 1.03939 1.01375 1.20749 0.94969 0.98889 0.97131 1.20696 0.98031 1.05834 1.00636 1.20917 0.93585 1.00152 0.99190 1.21230 0.94374 1.02704 1.01723 1.17712 0.93805 0.88012 0.90045 1.19980 0.90550 1.43966 0.95261 0.87706 1.26541 1.04415 0.92486 0.94380 1.69885 1.36539 1.39859 1.01721 0.85719 0.78273 0.80192 0.78379 1.17681 1.20582 1.18981 0.89943 0.92082 0.95563 0.90508 0.91762 0.90788 0.90721 0.93026 0.91740 0.91038 0.88890 0.90059 0.90587 0.93653 0.93468 0.95774 0.91346 0.87119 0.86845 0.87976 0.89861 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 10.21 113.37 1.16 1.76 16 2 O -0.38 -12.66 9.34 -148.98 -1.39 -14.05 16 3 C 0.13 3.77 0.60 -10.79 -0.01 3.76 16 4 C -0.17 -3.59 8.03 71.98 0.58 -3.01 16 5 C -0.20 -6.49 6.66 71.98 0.48 -6.01 16 6 C 0.08 2.36 1.90 45.39 0.09 2.45 16 7 H 0.07 1.80 7.81 -2.39 -0.02 1.79 16 8 C -0.11 -2.64 5.35 31.98 0.17 -2.47 16 9 C -0.13 -3.24 6.94 31.77 0.22 -3.02 16 10 C 0.05 1.66 6.32 86.65 0.55 2.21 16 11 N -0.51 -18.70 3.77 -865.17 -3.26 -21.96 16 12 C 0.12 4.98 3.66 85.56 0.31 5.29 16 13 C -0.18 -8.55 4.68 -19.40 -0.09 -8.64 16 14 C -0.10 -4.28 8.59 22.22 0.19 -4.09 16 15 C -0.23 -10.22 10.05 22.46 0.23 -9.99 16 16 C -0.12 -5.77 10.02 22.22 0.22 -5.54 16 17 C -0.18 -9.83 8.62 22.73 0.20 -9.63 16 18 C 0.11 5.72 5.44 -21.29 -0.12 5.60 16 19 C -0.47 -24.85 7.21 23.46 0.17 -24.69 16 20 H 0.11 5.50 5.06 -2.91 -0.01 5.48 16 21 C 0.03 1.71 5.25 85.26 0.45 2.15 16 22 N -0.85 -46.87 11.34 21.83 0.25 -46.62 16 23 Si 0.95 40.61 29.57 68.60 2.03 42.64 16 24 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.06 1.36 6.42 -2.39 -0.02 1.34 16 29 H 0.03 0.81 6.56 -2.39 -0.02 0.79 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.06 1.27 6.54 -2.39 -0.02 1.25 16 32 H 0.07 1.40 7.21 -2.39 -0.02 1.38 16 33 H 0.07 3.08 3.53 -2.38 -0.01 3.07 16 34 H 0.05 1.59 6.90 -2.39 -0.02 1.57 16 35 H 0.06 1.91 8.01 -2.39 -0.02 1.89 16 36 H 0.07 1.93 7.38 -2.39 -0.02 1.91 16 37 H 0.09 1.70 8.02 -2.39 -0.02 1.68 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.64 6.21 -2.38 -0.01 1.62 16 42 H 0.02 0.88 7.94 -2.38 -0.02 0.86 16 43 H 0.07 2.92 4.91 -2.39 -0.01 2.91 16 44 H 0.11 4.11 7.92 -2.91 -0.02 4.09 16 45 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 46 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 47 H 0.08 4.82 6.82 -2.91 -0.02 4.80 16 48 H 0.28 14.20 8.30 -92.70 -0.77 13.43 16 Total: -1.00 -60.97 357.22 3.36 -57.61 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.94 Total: 36.23 kcal Atomic # 6 Polarization: -58.65 SS G_CDS: 4.79 Total: -53.86 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: -3.01 Total: -68.57 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -1.39 Total: -14.05 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -60.97 3.36 -57.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.381 kcal (2) G-P(sol) polarization free energy of solvation -60.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.84 seconds