Wall clock time and date at job start Tue Mar 31 2020 09:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47111 * 2 1 4 4 C 1.53001 * 109.47025 * 186.82371 * 3 2 1 5 5 H 1.09000 * 109.47013 * 50.82634 * 4 3 2 6 6 C 1.50703 * 109.46875 * 170.82136 * 4 3 2 7 7 O 1.21251 * 119.99487 * 105.00459 * 6 4 3 8 8 C 1.47164 * 119.99920 * 285.00310 * 6 4 3 9 9 C 1.39856 * 120.16932 * 180.02562 * 8 6 4 10 10 C 1.37887 * 119.82468 * 180.02562 * 9 8 6 11 11 C 1.38398 * 120.17156 * 0.02562 * 10 9 8 12 12 C 1.38408 * 120.35066 * 0.22937 * 11 10 9 13 13 C 1.37894 * 120.16855 * 359.49125 * 12 11 10 14 14 N 1.46902 * 109.47060 * 290.82569 * 4 3 2 15 15 C 1.46898 * 110.99983 * 315.07948 * 14 4 3 16 16 C 1.46897 * 111.00386 * 79.03543 * 14 4 3 17 17 H 1.09001 * 109.46779 * 279.13072 * 16 14 4 18 18 C 1.50699 * 109.46865 * 39.12651 * 16 14 4 19 19 H 1.08007 * 120.00166 * 7.39131 * 18 16 14 20 20 C 1.37877 * 120.00011 * 187.39193 * 18 16 14 21 21 N 1.31517 * 119.99622 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00234 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47110 * 60.00069 * 22 20 18 24 24 H 1.48501 * 109.46973 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46897 * 300.00248 * 22 20 18 26 26 C 1.52995 * 109.47031 * 159.12686 * 16 14 4 27 27 C 1.52995 * 109.47462 * 64.09570 * 26 16 14 28 28 H 1.09005 * 109.47287 * 184.94899 * 1 2 3 29 29 H 1.09003 * 109.47433 * 304.95186 * 1 2 3 30 30 H 1.09001 * 109.47340 * 64.95092 * 1 2 3 31 31 H 1.09000 * 109.47513 * 239.99692 * 2 1 3 32 32 H 1.09007 * 109.46836 * 119.99608 * 2 1 3 33 33 H 1.09001 * 109.47167 * 66.82405 * 3 2 1 34 34 H 1.08999 * 109.46595 * 306.82788 * 3 2 1 35 35 H 1.08004 * 120.08530 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.91098 * 179.97438 * 10 9 8 37 37 H 1.08001 * 119.82584 * 179.97438 * 11 10 9 38 38 H 1.07998 * 119.91646 * 179.72555 * 12 11 10 39 39 H 1.08001 * 120.08295 * 180.22951 * 13 12 11 40 40 H 1.09000 * 109.47649 * 70.36497 * 15 14 4 41 41 H 1.08998 * 109.47558 * 190.37246 * 15 14 4 42 42 H 1.09005 * 109.47197 * 310.37316 * 15 14 4 43 43 H 0.97007 * 119.99846 * 180.02562 * 21 20 18 44 44 H 1.09009 * 109.46960 * 184.09805 * 26 16 14 45 45 H 1.09002 * 109.47286 * 304.09194 * 26 16 14 46 46 H 1.09000 * 109.47230 * 271.42097 * 27 26 16 47 47 H 1.09008 * 109.46998 * 31.41772 * 27 26 16 48 48 H 1.08996 * 109.47125 * 151.41397 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5604 1.4459 -0.1714 5 1 3.8307 0.8296 -1.0288 6 6 4.0372 2.8576 -0.3971 7 8 4.5977 3.4580 0.4948 8 6 3.8227 3.5072 -1.7001 9 6 4.2642 4.8169 -1.9137 10 6 4.0590 5.4189 -3.1371 11 6 3.4174 4.7307 -4.1521 12 6 2.9728 3.4361 -3.9468 13 6 3.1757 2.8183 -2.7309 14 7 4.1909 0.9037 1.0396 15 6 3.5812 1.4712 2.2497 16 6 4.1251 -0.5637 1.0556 17 1 3.1403 -0.8794 1.4001 18 6 4.3639 -1.0923 -0.3353 19 1 4.6637 -0.4191 -1.1249 20 6 4.1997 -2.4355 -0.5999 21 7 3.8342 -3.2551 0.3614 22 14 4.4951 -3.0907 -2.3242 23 1 5.8981 -2.8150 -2.7249 24 1 4.2524 -4.5556 -2.3453 25 1 3.5688 -2.4222 -3.2731 26 6 5.1962 -1.1119 2.0005 27 6 4.8955 -0.6584 3.4304 28 1 -0.3634 -1.0239 0.0887 29 1 -0.3634 0.5887 0.8423 30 1 -0.3634 0.4351 -0.9310 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7798 1.9199 0.9447 34 1 1.5803 1.9903 -0.8226 35 1 4.7639 5.3557 -1.1221 36 1 4.3990 6.4304 -3.3034 37 1 3.2593 5.2078 -5.1080 38 1 2.4691 2.9072 -4.7423 39 1 2.8314 1.8068 -2.5734 40 1 2.5713 1.0781 2.3664 41 1 4.1795 1.1999 3.1195 42 1 3.5404 2.5569 2.1611 43 1 3.7190 -4.2002 0.1753 44 1 5.1959 -2.2012 1.9571 45 1 6.1739 -0.7367 1.6983 46 1 5.3678 0.3070 3.6123 47 1 3.8174 -0.5661 3.5632 48 1 5.2867 -1.3928 4.1344 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:56 Heat of formation + Delta-G solvation = 10.658943 kcal Electronic energy + Delta-G solvation = -26593.701100 eV Core-core repulsion = 23228.614300 eV Total energy + Delta-G solvation = -3365.086800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.08841 -38.44787 -37.13726 -34.05349 -32.55568 -31.63690 -31.05960 -30.87132 -28.17620 -27.88861 -25.12761 -24.07405 -23.27663 -22.43832 -21.68468 -20.31265 -19.37745 -18.75960 -17.21518 -16.39777 -15.88369 -15.53589 -15.13511 -14.62726 -14.34563 -14.19563 -13.78904 -13.72355 -13.48579 -13.39518 -12.93074 -12.70207 -12.43627 -12.35382 -12.26977 -11.86605 -11.58395 -11.46178 -11.25109 -11.14249 -10.97623 -10.93680 -10.87348 -10.72700 -10.42552 -10.37988 -9.99982 -9.93085 -9.54331 -9.37820 -8.95479 -8.87175 -8.70900 -8.64273 -8.42336 -6.98630 -6.08339 -4.11281 0.85802 1.41020 2.79461 3.25406 3.31963 3.34632 3.93641 4.30769 4.37000 4.87422 4.94559 5.06579 5.15442 5.23811 5.38302 5.47196 5.54552 5.61922 5.70224 5.81572 5.94176 5.96848 6.05239 6.12130 6.17783 6.24879 6.28367 6.34237 6.36724 6.40648 6.43069 6.44671 6.50473 6.52536 6.58323 6.67404 6.77966 6.85368 6.92883 7.01003 7.15350 7.36083 7.36780 7.58731 7.70422 7.85273 8.01053 8.18444 8.30102 8.62273 8.94990 9.52597 10.99155 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.005865 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.088281 B = 4773.038615 C = 5598.570280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.135 4.135 4 C 0.037 3.963 5 H 0.137 0.863 6 C 0.398 3.602 7 O -0.445 6.445 8 C -0.156 4.156 9 C -0.068 4.068 10 C -0.137 4.137 11 C -0.099 4.099 12 C -0.135 4.135 13 C -0.071 4.071 14 N -0.518 5.518 15 C 0.004 3.996 16 C 0.208 3.792 17 H 0.030 0.970 18 C -0.514 4.514 19 H 0.063 0.937 20 C 0.069 3.931 21 N -0.883 5.883 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C -0.105 4.105 27 C -0.149 4.149 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.015 0.985 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.262 0.738 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.308 11.160 -5.144 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.174 4.174 4 C -0.072 4.072 5 H 0.154 0.846 6 C 0.275 3.725 7 O -0.319 6.319 8 C -0.158 4.158 9 C -0.087 4.087 10 C -0.155 4.155 11 C -0.117 4.117 12 C -0.153 4.153 13 C -0.089 4.089 14 N -0.241 5.241 15 C -0.144 4.144 16 C 0.103 3.897 17 H 0.047 0.953 18 C -0.552 4.552 19 H 0.081 0.919 20 C -0.134 4.134 21 N -0.521 5.521 22 Si 0.711 3.289 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.143 4.143 27 C -0.206 4.206 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.156 0.844 40 H 0.033 0.967 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -3.549 11.389 -4.611 12.789 hybrid contribution -0.696 -0.669 -1.082 1.450 sum -4.245 10.720 -5.693 12.859 Atomic orbital electron populations 1.21802 0.97704 1.00853 1.00229 1.21901 0.93415 0.95484 1.05912 1.22136 0.95173 0.98675 1.01378 1.22303 0.92546 0.92892 0.99479 0.84553 1.22927 0.75145 0.89261 0.85196 1.90407 1.31819 1.65367 1.44269 1.20794 1.02576 0.95619 0.96793 1.21428 0.96227 0.93885 0.97132 1.21091 1.00753 1.00221 0.93484 1.21346 0.96799 0.94749 0.98783 1.21164 1.01191 0.95390 0.97504 1.21678 0.94936 1.00090 0.92168 1.62007 1.53336 1.09818 0.98968 1.22965 0.96908 0.99327 0.95197 1.19690 0.94608 0.80124 0.95315 0.95315 1.21144 1.46748 0.92879 0.94438 0.91934 1.24857 0.95029 0.96897 0.96594 1.69912 1.46571 1.04005 1.31633 0.86790 0.78927 0.77996 0.85155 1.20222 1.21341 1.20197 1.21511 0.99108 1.02051 0.91672 1.22146 1.00151 0.99099 0.99164 0.93145 0.93921 0.93848 0.90306 0.89250 0.92230 0.92676 0.85207 0.85854 0.86020 0.85594 0.84439 0.96678 0.90320 0.92603 0.92852 0.90169 0.94013 0.93587 0.93715 0.95194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.93 16 2 C -0.13 -2.38 4.51 -26.73 -0.12 -2.50 16 3 C -0.13 -2.29 3.92 -26.73 -0.10 -2.40 16 4 C 0.04 0.71 1.30 -68.86 -0.09 0.62 16 5 H 0.14 2.77 3.97 -51.93 -0.21 2.56 16 6 C 0.40 7.28 6.24 -30.68 -0.19 7.09 16 7 O -0.44 -9.06 14.58 5.58 0.08 -8.98 16 8 C -0.16 -2.43 5.81 -105.07 -0.61 -3.04 16 9 C -0.07 -0.95 9.60 -39.11 -0.38 -1.32 16 10 C -0.14 -1.55 10.03 -39.65 -0.40 -1.95 16 11 C -0.10 -1.04 10.04 -39.46 -0.40 -1.44 16 12 C -0.13 -1.56 10.03 -39.64 -0.40 -1.95 16 13 C -0.07 -0.98 8.56 -39.11 -0.33 -1.31 16 14 N -0.52 -10.92 4.26 -229.69 -0.98 -11.90 16 15 C 0.00 0.08 6.88 60.06 0.41 0.49 16 16 C 0.21 4.79 0.84 -68.87 -0.06 4.73 16 17 H 0.03 0.73 4.58 -51.93 -0.24 0.49 16 18 C -0.51 -12.60 5.95 -34.44 -0.20 -12.80 16 19 H 0.06 1.54 5.66 -52.48 -0.30 1.24 16 20 C 0.07 1.74 5.31 -17.82 -0.09 1.65 16 21 N -0.88 -23.32 11.86 55.43 0.66 -22.66 16 22 Si 0.88 19.87 29.54 -169.99 -5.02 14.85 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C -0.10 -2.43 5.50 -26.74 -0.15 -2.58 16 27 C -0.15 -2.94 8.27 37.16 0.31 -2.63 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.58 7.19 -51.93 -0.37 1.20 16 32 H 0.09 1.90 4.29 -51.93 -0.22 1.68 16 33 H 0.06 1.02 5.95 -51.93 -0.31 0.72 16 34 H 0.05 0.84 6.71 -51.93 -0.35 0.49 16 35 H 0.13 1.77 7.65 -52.48 -0.40 1.37 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.14 1.89 6.08 -52.49 -0.32 1.58 16 40 H 0.01 0.28 6.06 -51.93 -0.31 -0.03 16 41 H 0.08 1.49 4.00 -51.93 -0.21 1.28 16 42 H 0.06 1.07 6.15 -51.93 -0.32 0.75 16 43 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 44 H 0.08 2.04 6.61 -51.92 -0.34 1.70 16 45 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.05 0.86 6.55 -51.93 -0.34 0.52 16 47 H 0.04 0.87 6.67 -51.92 -0.35 0.52 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 355.56 15.07 5.36 5.36 Total: -1.00 -27.09 355.56 -9.44 -36.53 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.10 Total: 8.08 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -2.43 Total: -21.27 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: -0.32 Total: -34.57 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.09 -9.44 -36.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.187 kcal (2) G-P(sol) polarization free energy of solvation -27.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds