Wall clock time and date at job start Tue Mar 31 2020 09:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47111 * 2 1 4 4 C 1.53001 * 109.47025 * 186.82371 * 3 2 1 5 5 H 1.09000 * 109.47013 * 50.82634 * 4 3 2 6 6 C 1.50703 * 109.46875 * 170.82136 * 4 3 2 7 7 O 1.21251 * 119.99487 * 105.00459 * 6 4 3 8 8 C 1.47164 * 119.99920 * 285.00310 * 6 4 3 9 9 C 1.39856 * 120.16932 * 180.02562 * 8 6 4 10 10 C 1.37887 * 119.82468 * 180.02562 * 9 8 6 11 11 C 1.38398 * 120.17156 * 0.02562 * 10 9 8 12 12 C 1.38408 * 120.35066 * 0.22937 * 11 10 9 13 13 C 1.37894 * 120.16855 * 359.49125 * 12 11 10 14 14 N 1.46902 * 109.47060 * 290.82569 * 4 3 2 15 15 C 1.46898 * 110.99983 * 315.07948 * 14 4 3 16 16 C 1.46897 * 111.00386 * 79.03543 * 14 4 3 17 17 H 1.09001 * 109.46779 * 279.13072 * 16 14 4 18 18 C 1.50699 * 109.46865 * 39.12651 * 16 14 4 19 19 H 1.08007 * 120.00166 * 7.39131 * 18 16 14 20 20 C 1.37877 * 120.00011 * 187.39193 * 18 16 14 21 21 N 1.31517 * 119.99622 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00234 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47110 * 60.00069 * 22 20 18 24 24 H 1.48501 * 109.46973 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46897 * 300.00248 * 22 20 18 26 26 C 1.52995 * 109.47031 * 159.12686 * 16 14 4 27 27 C 1.52995 * 109.47462 * 64.09570 * 26 16 14 28 28 H 1.09005 * 109.47287 * 184.94899 * 1 2 3 29 29 H 1.09003 * 109.47433 * 304.95186 * 1 2 3 30 30 H 1.09001 * 109.47340 * 64.95092 * 1 2 3 31 31 H 1.09000 * 109.47513 * 239.99692 * 2 1 3 32 32 H 1.09007 * 109.46836 * 119.99608 * 2 1 3 33 33 H 1.09001 * 109.47167 * 66.82405 * 3 2 1 34 34 H 1.08999 * 109.46595 * 306.82788 * 3 2 1 35 35 H 1.08004 * 120.08530 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.91098 * 179.97438 * 10 9 8 37 37 H 1.08001 * 119.82584 * 179.97438 * 11 10 9 38 38 H 1.07998 * 119.91646 * 179.72555 * 12 11 10 39 39 H 1.08001 * 120.08295 * 180.22951 * 13 12 11 40 40 H 1.09000 * 109.47649 * 70.36497 * 15 14 4 41 41 H 1.08998 * 109.47558 * 190.37246 * 15 14 4 42 42 H 1.09005 * 109.47197 * 310.37316 * 15 14 4 43 43 H 0.97007 * 119.99846 * 180.02562 * 21 20 18 44 44 H 1.09009 * 109.46960 * 184.09805 * 26 16 14 45 45 H 1.09002 * 109.47286 * 304.09194 * 26 16 14 46 46 H 1.09000 * 109.47230 * 271.42097 * 27 26 16 47 47 H 1.09008 * 109.46998 * 31.41772 * 27 26 16 48 48 H 1.08996 * 109.47125 * 151.41397 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5604 1.4459 -0.1714 5 1 3.8307 0.8296 -1.0288 6 6 4.0372 2.8576 -0.3971 7 8 4.5977 3.4580 0.4948 8 6 3.8227 3.5072 -1.7001 9 6 4.2642 4.8169 -1.9137 10 6 4.0590 5.4189 -3.1371 11 6 3.4174 4.7307 -4.1521 12 6 2.9728 3.4361 -3.9468 13 6 3.1757 2.8183 -2.7309 14 7 4.1909 0.9037 1.0396 15 6 3.5812 1.4712 2.2497 16 6 4.1251 -0.5637 1.0556 17 1 3.1403 -0.8794 1.4001 18 6 4.3639 -1.0923 -0.3353 19 1 4.6637 -0.4191 -1.1249 20 6 4.1997 -2.4355 -0.5999 21 7 3.8342 -3.2551 0.3614 22 14 4.4951 -3.0907 -2.3242 23 1 5.8981 -2.8150 -2.7249 24 1 4.2524 -4.5556 -2.3453 25 1 3.5688 -2.4222 -3.2731 26 6 5.1962 -1.1119 2.0005 27 6 4.8955 -0.6584 3.4304 28 1 -0.3634 -1.0239 0.0887 29 1 -0.3634 0.5887 0.8423 30 1 -0.3634 0.4351 -0.9310 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7798 1.9199 0.9447 34 1 1.5803 1.9903 -0.8226 35 1 4.7639 5.3557 -1.1221 36 1 4.3990 6.4304 -3.3034 37 1 3.2593 5.2078 -5.1080 38 1 2.4691 2.9072 -4.7423 39 1 2.8314 1.8068 -2.5734 40 1 2.5713 1.0781 2.3664 41 1 4.1795 1.1999 3.1195 42 1 3.5404 2.5569 2.1611 43 1 3.7190 -4.2002 0.1753 44 1 5.1959 -2.2012 1.9571 45 1 6.1739 -0.7367 1.6983 46 1 5.3678 0.3070 3.6123 47 1 3.8174 -0.5661 3.5632 48 1 5.2867 -1.3928 4.1344 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:55 Heat of formation + Delta-G solvation = -2.645913 kcal Electronic energy + Delta-G solvation = -26594.278042 eV Core-core repulsion = 23228.614300 eV Total energy + Delta-G solvation = -3365.663742 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.46129 -39.68128 -38.59519 -35.66777 -34.37193 -33.04333 -32.39372 -31.84546 -29.79525 -29.50516 -26.52377 -25.79537 -24.64868 -23.57484 -23.08062 -21.69350 -21.07390 -20.22345 -18.60067 -18.07142 -17.34642 -16.77414 -16.44166 -16.23869 -15.85807 -15.39281 -15.32904 -15.17393 -14.84931 -14.44310 -14.38877 -14.25055 -13.90789 -13.77640 -13.55347 -13.45984 -13.15937 -12.90145 -12.72360 -12.67795 -12.56012 -12.54492 -12.31754 -12.08008 -11.94901 -11.87488 -11.68742 -11.59939 -11.21418 -11.11021 -10.53261 -10.34916 -10.17296 -9.90868 -9.87131 -8.66196 -8.04301 -6.10838 -0.23572 0.46310 1.43994 1.47307 1.51912 1.55157 2.46736 2.90322 2.98367 3.27479 3.59227 3.92102 4.07115 4.11305 4.15601 4.24107 4.28018 4.44826 4.52618 4.53264 4.60783 4.63743 4.64433 4.70332 4.71140 4.75763 4.83456 4.89410 4.94900 5.00104 5.07841 5.11759 5.14435 5.22964 5.35703 5.36588 5.44968 5.50075 5.51011 5.52916 5.58293 5.69245 5.75583 5.77127 6.00324 6.00850 6.28381 6.44804 6.68927 6.87707 7.03379 7.55650 9.02704 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012267 B = 0.005865 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.088281 B = 4773.038615 C = 5598.570280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C -0.123 4.123 4 C 0.037 3.963 5 H 0.122 0.878 6 C 0.400 3.600 7 O -0.477 6.477 8 C -0.183 4.183 9 C -0.080 4.080 10 C -0.133 4.133 11 C -0.085 4.085 12 C -0.135 4.135 13 C -0.081 4.081 14 N -0.532 5.532 15 C 0.012 3.988 16 C 0.216 3.784 17 H 0.013 0.987 18 C -0.513 4.513 19 H 0.059 0.941 20 C 0.029 3.971 21 N -0.910 5.910 22 Si 0.934 3.066 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.263 1.263 26 C -0.104 4.104 27 C -0.137 4.137 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.152 0.848 39 H 0.131 0.869 40 H 0.017 0.983 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.259 0.741 44 H 0.053 0.947 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.044 0.956 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 13.135 -7.352 15.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.072 4.072 5 H 0.139 0.861 6 C 0.279 3.721 7 O -0.353 6.353 8 C -0.185 4.185 9 C -0.099 4.099 10 C -0.151 4.151 11 C -0.103 4.103 12 C -0.152 4.152 13 C -0.099 4.099 14 N -0.255 5.255 15 C -0.136 4.136 16 C 0.111 3.889 17 H 0.030 0.970 18 C -0.551 4.551 19 H 0.077 0.923 20 C -0.171 4.171 21 N -0.549 5.549 22 Si 0.761 3.239 23 H -0.206 1.206 24 H -0.216 1.216 25 H -0.188 1.188 26 C -0.143 4.143 27 C -0.193 4.193 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.141 0.859 36 H 0.172 0.828 37 H 0.178 0.822 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.035 0.965 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.550 13.376 -6.835 15.695 hybrid contribution -0.376 -1.213 -0.471 1.354 sum -4.925 12.164 -7.306 15.020 Atomic orbital electron populations 1.21736 0.95225 1.01141 1.01841 1.21712 0.95563 0.95527 1.03116 1.22016 0.93870 0.98085 1.02172 1.22272 0.93776 0.93378 0.97801 0.86125 1.23042 0.74099 0.88672 0.86248 1.90383 1.33486 1.65922 1.45531 1.20584 1.05323 0.96744 0.95817 1.21524 0.96592 0.93348 0.98407 1.21452 0.99855 1.01487 0.92312 1.21823 0.94477 0.94060 0.99922 1.21506 1.00708 0.96035 0.96975 1.21714 0.95311 0.99960 0.92959 1.61953 1.54495 1.08631 1.00456 1.22897 0.96927 0.99141 0.94626 1.19473 0.93538 0.81437 0.94496 0.96976 1.21337 1.45769 0.92903 0.95126 0.92333 1.25426 0.95113 0.97177 0.99345 1.70029 1.47881 1.03922 1.33093 0.85976 0.78646 0.77216 0.82074 1.20604 1.21640 1.18798 1.21412 0.98436 1.00290 0.94124 1.21996 1.00328 0.99941 0.97076 0.93503 0.92761 0.91785 0.92515 0.92480 0.92259 0.90429 0.85891 0.82836 0.82203 0.83015 0.85159 0.96456 0.90029 0.92492 0.93219 0.92845 0.95498 0.92479 0.93655 0.93799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.91 71.98 0.71 -3.52 16 2 C -0.12 -4.51 4.51 30.60 0.14 -4.37 16 3 C -0.12 -4.17 3.92 30.60 0.12 -4.05 16 4 C 0.04 1.44 1.30 44.17 0.06 1.50 16 5 H 0.12 5.06 3.97 -2.39 -0.01 5.05 16 6 C 0.40 14.86 6.24 28.03 0.17 15.03 16 7 O -0.48 -19.86 14.58 -2.94 -0.04 -19.90 16 8 C -0.18 -5.60 5.81 -20.15 -0.12 -5.71 16 9 C -0.08 -2.12 9.60 22.58 0.22 -1.90 16 10 C -0.13 -2.54 10.03 22.22 0.22 -2.32 16 11 C -0.09 -1.41 10.04 22.35 0.22 -1.19 16 12 C -0.13 -2.65 10.03 22.23 0.22 -2.43 16 13 C -0.08 -2.13 8.56 22.58 0.19 -1.94 16 14 N -0.53 -23.04 4.26 -880.60 -3.75 -26.79 16 15 C 0.01 0.47 6.88 127.69 0.88 1.34 16 16 C 0.22 10.33 0.84 44.17 0.04 10.37 16 17 H 0.01 0.67 4.58 -2.39 -0.01 0.66 16 18 C -0.51 -25.94 5.95 25.60 0.15 -25.79 16 19 H 0.06 2.97 5.66 -2.91 -0.02 2.95 16 20 C 0.03 1.52 5.31 84.65 0.45 1.97 16 21 N -0.91 -49.56 11.86 21.45 0.25 -49.31 16 22 Si 0.93 41.28 29.54 68.60 2.03 43.31 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 26 C -0.10 -4.98 5.50 30.59 0.17 -4.81 16 27 C -0.14 -5.43 8.27 71.98 0.60 -4.83 16 28 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 2.32 7.19 -2.39 -0.02 2.30 16 32 H 0.06 2.51 4.29 -2.38 -0.01 2.50 16 33 H 0.06 2.02 5.95 -2.39 -0.01 2.01 16 34 H 0.08 2.28 6.71 -2.39 -0.02 2.26 16 35 H 0.12 3.32 7.65 -2.91 -0.02 3.30 16 36 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 37 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 39 H 0.13 3.52 6.08 -2.91 -0.02 3.50 16 40 H 0.02 0.66 6.06 -2.39 -0.01 0.64 16 41 H 0.08 3.10 4.00 -2.39 -0.01 3.09 16 42 H 0.06 2.21 6.15 -2.38 -0.01 2.19 16 43 H 0.26 13.68 8.31 -92.70 -0.77 12.91 16 44 H 0.05 2.83 6.61 -2.38 -0.02 2.81 16 45 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 46 H 0.06 2.13 6.55 -2.39 -0.02 2.12 16 47 H 0.04 1.78 6.67 -2.38 -0.02 1.76 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -60.49 355.56 3.90 -56.59 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.96 Total: 28.76 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 4.45 Total: -32.66 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -3.50 Total: -76.10 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.04 Total: -19.90 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -60.49 3.90 -56.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.948 kcal (2) G-P(sol) polarization free energy of solvation -60.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds