Wall clock time and date at job start Tue Mar 31 2020 09:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47216 * 2 1 4 4 C 1.52995 * 109.47284 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47044 * 179.97438 * 4 3 2 6 6 C 1.36942 * 120.00010 * 86.08053 * 5 4 3 7 7 H 1.07998 * 120.00402 * 209.01734 * 6 5 4 8 8 C 1.38811 * 119.99767 * 29.01560 * 6 5 4 9 9 N 1.31619 * 120.00117 * 41.99340 * 8 6 5 10 10 Si 1.86801 * 119.99881 * 221.99673 * 8 6 5 11 11 H 1.48501 * 109.47123 * 265.00252 * 10 8 6 12 12 H 1.48493 * 109.47197 * 25.00329 * 10 8 6 13 13 H 1.48497 * 109.47184 * 145.00909 * 10 8 6 14 14 C 1.46500 * 120.00464 * 266.07631 * 5 4 3 15 15 H 1.09002 * 109.54081 * 359.82797 * 14 5 4 16 16 C 1.53179 * 109.54403 * 120.00209 * 14 5 4 17 17 C 1.53084 * 109.16359 * 176.85127 * 16 14 5 18 18 O 1.42902 * 109.41627 * 302.39148 * 17 16 14 19 19 C 1.42908 * 114.09852 * 61.15611 * 18 17 16 20 20 H 1.09003 * 109.47564 * 58.82624 * 19 18 17 21 21 C 1.50703 * 109.47862 * 178.84768 * 19 18 17 22 22 C 1.38239 * 119.99807 * 39.73381 * 21 19 18 23 23 C 1.38234 * 119.99529 * 179.78434 * 22 21 19 24 24 C 1.38231 * 120.00120 * 0.43986 * 23 22 21 25 25 C 1.38235 * 120.00254 * 359.80875 * 24 23 22 26 26 C 1.38233 * 119.99751 * 219.99910 * 21 19 18 27 27 C 1.53084 * 109.41480 * 298.84475 * 19 18 17 28 28 H 1.08997 * 109.47192 * 60.00185 * 1 2 3 29 29 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46888 * 299.99735 * 1 2 3 31 31 H 1.09001 * 109.46711 * 239.99791 * 2 1 3 32 32 H 1.09001 * 109.47017 * 120.00291 * 2 1 3 33 33 H 1.09001 * 109.46824 * 59.99822 * 3 2 1 34 34 H 1.09002 * 109.46714 * 300.00455 * 3 2 1 35 35 H 1.09001 * 109.47361 * 60.00120 * 4 3 2 36 36 H 1.08997 * 109.47133 * 299.99820 * 4 3 2 37 37 H 0.96999 * 119.99967 * 0.02562 * 9 8 6 38 38 H 1.09002 * 109.51677 * 296.75931 * 16 14 5 39 39 H 1.09001 * 109.51990 * 56.94312 * 16 14 5 40 40 H 1.08998 * 109.48182 * 62.37137 * 17 16 14 41 41 H 1.09003 * 109.48211 * 182.41103 * 17 16 14 42 42 H 1.07995 * 120.00270 * 359.97438 * 22 21 19 43 43 H 1.07996 * 120.00045 * 180.26907 * 23 22 21 44 44 H 1.08000 * 120.00309 * 179.83161 * 24 23 22 45 45 H 1.08000 * 120.00333 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.00075 * 359.97438 * 26 21 19 47 47 H 1.09005 * 109.52780 * 297.70011 * 27 19 18 48 48 H 1.09003 * 109.52290 * 177.50971 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.2106 3.4966 1.1816 7 1 4.1062 4.5712 1.2090 8 6 4.4992 2.7975 2.3456 9 7 5.3748 1.8151 2.3233 10 14 3.6447 3.2510 3.9436 11 1 4.5014 4.1873 4.7147 12 1 2.3451 3.9032 3.6423 13 1 3.4083 2.0230 4.7444 14 6 4.3838 3.4851 -1.2673 15 1 4.2041 2.7981 -2.0943 16 6 3.5070 4.7298 -1.4354 17 6 3.9081 5.4571 -2.7214 18 8 5.2954 5.7949 -2.6631 19 6 6.1664 4.6672 -2.5535 20 1 6.0157 4.0072 -3.4077 21 6 7.5977 5.1383 -2.5287 22 6 7.9382 6.2778 -1.8238 23 6 9.2518 6.7074 -1.7974 24 6 10.2234 6.0027 -2.4833 25 6 9.8820 4.8662 -3.1923 26 6 8.5691 4.4341 -3.2152 27 6 5.8560 3.9082 -1.2608 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9286 0.8891 37 1 5.8187 1.5798 1.4936 38 1 2.4601 4.4322 -1.4966 39 1 3.6488 5.3932 -0.5823 40 1 3.7279 4.8074 -3.5778 41 1 3.3165 6.3668 -2.8241 42 1 7.1785 6.8306 -1.2913 43 1 9.5186 7.5951 -1.2433 44 1 11.2492 6.3399 -2.4649 45 1 10.6411 4.3154 -3.7278 46 1 8.3024 3.5461 -3.7690 47 1 6.0453 4.5550 -0.4041 48 1 6.4890 3.0231 -1.1971 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256824726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:29 Heat of formation + Delta-G solvation = -21.046061 kcal Electronic energy + Delta-G solvation = -25630.425254 eV Core-core repulsion = 22263.963621 eV Total energy + Delta-G solvation = -3366.461632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.71450 -38.27093 -36.38834 -34.12392 -32.52272 -32.33071 -30.74191 -30.20529 -28.95083 -27.56526 -24.55904 -23.76490 -23.28195 -22.41732 -21.54685 -20.62479 -20.05066 -19.56071 -17.13346 -16.65144 -15.86908 -15.59521 -14.94566 -14.90031 -14.65126 -14.23369 -13.99375 -13.69703 -13.59642 -13.43710 -13.23822 -13.18005 -12.77202 -12.41774 -12.22308 -12.04305 -11.76102 -11.59415 -11.23428 -10.95058 -10.82623 -10.76139 -10.69619 -10.55700 -10.46920 -10.35220 -10.08726 -10.04714 -9.94581 -9.64313 -9.39444 -9.21624 -8.75723 -8.48001 -8.11002 -6.79912 -6.19775 -3.13950 1.47985 1.57141 3.49966 3.55535 3.70557 3.85576 4.15026 4.57605 4.96743 5.02839 5.05673 5.13355 5.26875 5.33978 5.41671 5.45476 5.47861 5.53147 5.57453 5.64662 5.66960 5.73893 5.76639 5.93235 5.97088 6.03626 6.12998 6.15069 6.21027 6.22458 6.25112 6.36202 6.40892 6.47412 6.56333 6.59763 6.63342 6.69803 6.74738 6.77422 6.79538 7.02163 7.12853 7.14619 7.17160 7.33594 7.59365 8.16994 8.59391 9.14020 9.89093 10.35315 11.09372 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.004338 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.231521 B = 6452.309420 C = 7315.218426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.129 4.129 4 C 0.143 3.857 5 N -0.585 5.585 6 C -0.366 4.366 7 H 0.053 0.947 8 C -0.008 4.008 9 N -0.883 5.883 10 Si 1.045 2.955 11 H -0.295 1.295 12 H -0.291 1.291 13 H -0.288 1.288 14 C 0.178 3.822 15 H 0.044 0.956 16 C -0.161 4.161 17 C 0.066 3.934 18 O -0.380 6.380 19 C 0.132 3.868 20 H 0.056 0.944 21 C -0.069 4.069 22 C -0.090 4.090 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.114 4.114 27 C -0.141 4.141 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.270 0.730 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.080 0.920 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 3.466 -11.013 11.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.169 4.169 4 C 0.016 3.984 5 N -0.305 5.305 6 C -0.494 4.494 7 H 0.071 0.929 8 C -0.214 4.214 9 N -0.519 5.519 10 Si 0.875 3.125 11 H -0.223 1.223 12 H -0.218 1.218 13 H -0.214 1.214 14 C 0.070 3.930 15 H 0.063 0.937 16 C -0.200 4.200 17 C -0.011 4.011 18 O -0.299 6.299 19 C 0.074 3.926 20 H 0.074 0.926 21 C -0.069 4.069 22 C -0.108 4.108 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.132 4.132 27 C -0.181 4.181 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.145 0.855 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.098 0.902 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.188 3.258 -9.373 9.994 hybrid contribution -0.031 0.152 -1.502 1.510 sum 1.157 3.410 -10.875 11.456 Atomic orbital electron populations 1.21759 0.96808 1.00537 1.01423 1.21506 0.94935 0.98498 1.01230 1.22084 0.99373 0.94298 1.01152 1.20916 0.91157 0.86410 0.99873 1.44014 1.73697 1.11511 1.01274 1.19515 1.51131 0.92866 0.85863 0.92877 1.25578 0.96070 0.98764 1.00970 1.70804 1.17946 1.34395 1.28792 0.83858 0.76691 0.75820 0.76155 1.22308 1.21794 1.21361 1.20341 0.91110 0.92251 0.89307 0.93746 1.22614 1.00309 0.99560 0.97547 1.22570 0.81799 0.99608 0.97129 1.87852 1.16097 1.31459 1.94527 1.20958 0.86232 0.87356 0.98101 0.92582 1.19708 0.94217 0.95737 0.97212 1.21045 0.96152 0.95850 0.97745 1.21156 0.93203 1.00130 0.99727 1.21099 0.99127 0.96019 0.98183 1.21027 0.95991 0.97089 1.00137 1.20938 0.92994 0.99804 0.99441 1.22600 0.99133 1.00043 0.96310 0.93307 0.93593 0.92936 0.93021 0.92275 0.91995 0.93847 0.95717 0.91226 0.91987 0.91879 0.90674 0.94099 0.89636 0.85526 0.86233 0.86445 0.86273 0.86249 0.90179 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.50 5.52 -26.73 -0.15 -2.65 16 4 C 0.14 3.15 5.12 -4.05 -0.02 3.13 16 5 N -0.59 -13.64 2.30 -165.46 -0.38 -14.02 16 6 C -0.37 -9.64 7.97 -15.06 -0.12 -9.76 16 7 H 0.05 1.47 6.90 -52.49 -0.36 1.11 16 8 C -0.01 -0.22 4.47 -17.43 -0.08 -0.30 16 9 N -0.88 -25.44 12.39 55.49 0.69 -24.75 16 10 Si 1.04 24.95 30.06 -169.99 -5.11 19.84 16 11 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.18 3.55 2.72 -67.74 -0.18 3.37 16 15 H 0.04 0.84 7.75 -51.93 -0.40 0.44 16 16 C -0.16 -2.93 5.44 -26.60 -0.14 -3.07 16 17 C 0.07 1.01 6.84 37.20 0.25 1.27 16 18 O -0.38 -6.50 9.72 -35.23 -0.34 -6.84 16 19 C 0.13 2.20 2.85 -27.84 -0.08 2.12 16 20 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 21 C -0.07 -1.10 4.98 -104.62 -0.52 -1.62 16 22 C -0.09 -1.42 9.36 -39.58 -0.37 -1.79 16 23 C -0.12 -1.69 10.05 -39.59 -0.40 -2.08 16 24 C -0.13 -1.57 10.05 -39.58 -0.40 -1.97 16 25 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 26 C -0.11 -1.60 9.67 -39.58 -0.38 -1.99 16 27 C -0.14 -2.79 4.69 -26.60 -0.12 -2.91 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.02 0.51 7.84 -51.93 -0.41 0.10 16 36 H 0.07 1.75 5.65 -51.93 -0.29 1.46 16 37 H 0.27 7.88 7.89 -40.82 -0.32 7.56 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.55 6.86 -51.93 -0.36 1.19 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.13 2.05 7.77 -52.49 -0.41 1.64 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 46 H 0.12 1.47 8.04 -52.49 -0.42 1.05 16 47 H 0.08 1.83 7.56 -51.93 -0.39 1.44 16 48 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -28.55 379.39 -10.83 -39.37 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -8.50 Total: 4.76 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: -2.90 Total: -24.07 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.31 Total: -38.77 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.34 Total: -6.84 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.11 Total: 19.84 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.55 -10.83 -39.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256824726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.327 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds