Wall clock time and date at job start Tue Mar 31 2020 09:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47216 * 2 1 4 4 C 1.52995 * 109.47284 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47044 * 179.97438 * 4 3 2 6 6 C 1.36942 * 120.00010 * 86.08053 * 5 4 3 7 7 H 1.07998 * 120.00402 * 209.01734 * 6 5 4 8 8 C 1.38811 * 119.99767 * 29.01560 * 6 5 4 9 9 N 1.31619 * 120.00117 * 41.99340 * 8 6 5 10 10 Si 1.86801 * 119.99881 * 221.99673 * 8 6 5 11 11 H 1.48501 * 109.47123 * 265.00252 * 10 8 6 12 12 H 1.48493 * 109.47197 * 25.00329 * 10 8 6 13 13 H 1.48497 * 109.47184 * 145.00909 * 10 8 6 14 14 C 1.46500 * 120.00464 * 266.07631 * 5 4 3 15 15 H 1.09002 * 109.54081 * 359.82797 * 14 5 4 16 16 C 1.53179 * 109.54403 * 120.00209 * 14 5 4 17 17 C 1.53084 * 109.16359 * 176.85127 * 16 14 5 18 18 O 1.42902 * 109.41627 * 302.39148 * 17 16 14 19 19 C 1.42908 * 114.09852 * 61.15611 * 18 17 16 20 20 H 1.09003 * 109.47564 * 58.82624 * 19 18 17 21 21 C 1.50703 * 109.47862 * 178.84768 * 19 18 17 22 22 C 1.38239 * 119.99807 * 39.73381 * 21 19 18 23 23 C 1.38234 * 119.99529 * 179.78434 * 22 21 19 24 24 C 1.38231 * 120.00120 * 0.43986 * 23 22 21 25 25 C 1.38235 * 120.00254 * 359.80875 * 24 23 22 26 26 C 1.38233 * 119.99751 * 219.99910 * 21 19 18 27 27 C 1.53084 * 109.41480 * 298.84475 * 19 18 17 28 28 H 1.08997 * 109.47192 * 60.00185 * 1 2 3 29 29 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46888 * 299.99735 * 1 2 3 31 31 H 1.09001 * 109.46711 * 239.99791 * 2 1 3 32 32 H 1.09001 * 109.47017 * 120.00291 * 2 1 3 33 33 H 1.09001 * 109.46824 * 59.99822 * 3 2 1 34 34 H 1.09002 * 109.46714 * 300.00455 * 3 2 1 35 35 H 1.09001 * 109.47361 * 60.00120 * 4 3 2 36 36 H 1.08997 * 109.47133 * 299.99820 * 4 3 2 37 37 H 0.96999 * 119.99967 * 0.02562 * 9 8 6 38 38 H 1.09002 * 109.51677 * 296.75931 * 16 14 5 39 39 H 1.09001 * 109.51990 * 56.94312 * 16 14 5 40 40 H 1.08998 * 109.48182 * 62.37137 * 17 16 14 41 41 H 1.09003 * 109.48211 * 182.41103 * 17 16 14 42 42 H 1.07995 * 120.00270 * 359.97438 * 22 21 19 43 43 H 1.07996 * 120.00045 * 180.26907 * 23 22 21 44 44 H 1.08000 * 120.00309 * 179.83161 * 24 23 22 45 45 H 1.08000 * 120.00333 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.00075 * 359.97438 * 26 21 19 47 47 H 1.09005 * 109.52780 * 297.70011 * 27 19 18 48 48 H 1.09003 * 109.52290 * 177.50971 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.2106 3.4966 1.1816 7 1 4.1062 4.5712 1.2090 8 6 4.4992 2.7975 2.3456 9 7 5.3748 1.8151 2.3233 10 14 3.6447 3.2510 3.9436 11 1 4.5014 4.1873 4.7147 12 1 2.3451 3.9032 3.6423 13 1 3.4083 2.0230 4.7444 14 6 4.3838 3.4851 -1.2673 15 1 4.2041 2.7981 -2.0943 16 6 3.5070 4.7298 -1.4354 17 6 3.9081 5.4571 -2.7214 18 8 5.2954 5.7949 -2.6631 19 6 6.1664 4.6672 -2.5535 20 1 6.0157 4.0072 -3.4077 21 6 7.5977 5.1383 -2.5287 22 6 7.9382 6.2778 -1.8238 23 6 9.2518 6.7074 -1.7974 24 6 10.2234 6.0027 -2.4833 25 6 9.8820 4.8662 -3.1923 26 6 8.5691 4.4341 -3.2152 27 6 5.8560 3.9082 -1.2608 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9286 0.8891 37 1 5.8187 1.5798 1.4936 38 1 2.4601 4.4322 -1.4966 39 1 3.6488 5.3932 -0.5823 40 1 3.7279 4.8074 -3.5778 41 1 3.3165 6.3668 -2.8241 42 1 7.1785 6.8306 -1.2913 43 1 9.5186 7.5951 -1.2433 44 1 11.2492 6.3399 -2.4649 45 1 10.6411 4.3154 -3.7278 46 1 8.3024 3.5461 -3.7690 47 1 6.0453 4.5550 -0.4041 48 1 6.4890 3.0231 -1.1971 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256824726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:27 Heat of formation + Delta-G solvation = -33.774918 kcal Electronic energy + Delta-G solvation = -25630.977218 eV Core-core repulsion = 22263.963621 eV Total energy + Delta-G solvation = -3367.013597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -41.01746 -39.52259 -38.05635 -35.58630 -34.20658 -33.72261 -31.93117 -31.77418 -30.24258 -29.16579 -26.35499 -25.21636 -24.70267 -23.52897 -22.96072 -21.92775 -21.66874 -21.18191 -18.88204 -17.98648 -17.16724 -16.96952 -16.46685 -16.28610 -16.14430 -15.65288 -15.39524 -15.31931 -15.07798 -15.00029 -14.53807 -14.28498 -14.22598 -13.67803 -13.60894 -13.47721 -13.35789 -13.12404 -12.67798 -12.51139 -12.33186 -12.18091 -12.14140 -12.02067 -11.94596 -11.90829 -11.81353 -11.66381 -11.53676 -11.29343 -11.07501 -10.58367 -10.17885 -9.82755 -9.64416 -8.79531 -8.30807 -5.24293 0.39291 0.49642 1.53533 1.59384 1.78241 2.61555 2.70184 2.95433 3.11052 3.43628 3.79827 3.92808 3.99924 4.11548 4.13020 4.15185 4.17515 4.23507 4.28769 4.31353 4.38317 4.44998 4.51927 4.54700 4.61903 4.66721 4.72657 4.75325 4.84366 4.94468 4.99290 5.03416 5.06891 5.10539 5.12338 5.16770 5.21091 5.36972 5.42744 5.46610 5.51364 5.54619 5.59968 5.61639 5.67239 6.04121 6.09998 6.28736 6.41394 7.14548 7.88536 8.32118 8.92941 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.004338 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.231521 B = 6452.309420 C = 7315.218426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.143 3.857 5 N -0.598 5.598 6 C -0.352 4.352 7 H 0.034 0.966 8 C -0.056 4.056 9 N -0.909 5.909 10 Si 1.086 2.914 11 H -0.290 1.290 12 H -0.280 1.280 13 H -0.288 1.288 14 C 0.170 3.830 15 H 0.063 0.937 16 C -0.150 4.150 17 C 0.069 3.931 18 O -0.391 6.391 19 C 0.142 3.858 20 H 0.076 0.924 21 C -0.095 4.095 22 C -0.115 4.115 23 C -0.132 4.132 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.123 4.123 27 C -0.126 4.126 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.254 0.746 38 H 0.069 0.931 39 H 0.041 0.959 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.138 0.862 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.136 0.864 47 H 0.037 0.963 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 3.459 -13.186 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C -0.156 4.156 4 C 0.017 3.983 5 N -0.319 5.319 6 C -0.482 4.482 7 H 0.052 0.948 8 C -0.256 4.256 9 N -0.548 5.548 10 Si 0.913 3.087 11 H -0.217 1.217 12 H -0.206 1.206 13 H -0.214 1.214 14 C 0.064 3.936 15 H 0.081 0.919 16 C -0.190 4.190 17 C -0.008 4.008 18 O -0.310 6.310 19 C 0.083 3.917 20 H 0.094 0.906 21 C -0.095 4.095 22 C -0.134 4.134 23 C -0.149 4.149 24 C -0.142 4.142 25 C -0.141 4.141 26 C -0.141 4.141 27 C -0.166 4.166 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.156 0.844 44 H 0.168 0.832 45 H 0.169 0.831 46 H 0.154 0.846 47 H 0.056 0.944 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.035 3.266 -11.571 12.067 hybrid contribution 0.076 0.188 -0.900 0.923 sum 1.112 3.454 -12.471 12.988 Atomic orbital electron populations 1.21714 0.94566 1.02066 1.01693 1.21463 0.96868 0.96057 1.01367 1.21903 0.97032 0.96414 1.00258 1.20911 0.93022 0.85490 0.98847 1.44209 1.74150 1.11940 1.01565 1.19486 1.49200 0.92160 0.87306 0.94833 1.26579 0.96402 0.99014 1.03620 1.70920 1.19777 1.36190 1.27874 0.83270 0.76288 0.75615 0.73516 1.21727 1.20607 1.21425 1.20571 0.91553 0.93202 0.88320 0.91925 1.22469 1.00242 0.98135 0.98118 1.22691 0.81181 1.00917 0.96011 1.87866 1.16937 1.31863 1.94358 1.20856 0.87019 0.87255 0.96524 0.90610 1.19800 0.94206 0.96650 0.98841 1.21075 0.97057 0.96511 0.98712 1.21435 0.92540 1.00980 0.99991 1.21526 1.00342 0.95468 0.96815 1.21458 0.96007 0.97066 0.99597 1.21219 0.93401 1.00142 0.99300 1.22380 0.98685 0.98730 0.96779 0.92182 0.91463 0.93549 0.91475 0.93591 0.94699 0.92732 0.94363 0.94591 0.93627 0.91221 0.94015 0.91505 0.87320 0.87426 0.84400 0.83203 0.83081 0.84611 0.94440 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.12 -3.74 5.93 30.60 0.18 -3.56 16 3 C -0.12 -4.47 5.52 30.59 0.17 -4.30 16 4 C 0.14 6.43 5.12 86.38 0.44 6.88 16 5 N -0.60 -28.72 2.30 -677.38 -1.56 -30.28 16 6 C -0.35 -19.38 7.97 84.03 0.67 -18.71 16 7 H 0.03 1.97 6.90 -2.91 -0.02 1.95 16 8 C -0.06 -3.15 4.47 84.86 0.38 -2.77 16 9 N -0.91 -54.62 12.39 21.65 0.27 -54.35 16 10 Si 1.09 51.94 30.06 68.60 2.06 54.00 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 14 C 0.17 6.88 2.72 45.11 0.12 7.01 16 15 H 0.06 2.31 7.75 -2.39 -0.02 2.29 16 16 C -0.15 -5.46 5.44 30.68 0.17 -5.29 16 17 C 0.07 1.99 6.84 72.01 0.49 2.49 16 18 O -0.39 -13.20 9.72 -148.98 -1.45 -14.65 16 19 C 0.14 4.72 2.85 29.88 0.09 4.81 16 20 H 0.08 2.22 8.00 -2.39 -0.02 2.20 16 21 C -0.09 -3.04 4.98 -19.86 -0.10 -3.14 16 22 C -0.12 -3.73 9.36 22.27 0.21 -3.52 16 23 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 24 C -0.12 -2.77 10.05 22.27 0.22 -2.55 16 25 C -0.12 -2.79 10.05 22.27 0.22 -2.57 16 26 C -0.12 -3.28 9.67 22.27 0.22 -3.07 16 27 C -0.13 -5.17 4.69 30.68 0.14 -5.02 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.58 7.84 -2.39 -0.02 1.56 16 36 H 0.04 1.88 5.65 -2.39 -0.01 1.87 16 37 H 0.25 15.65 7.89 -92.71 -0.73 14.92 16 38 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.04 1.78 6.86 -2.39 -0.02 1.76 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.11 3.75 7.77 -2.91 -0.02 3.73 16 43 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 45 H 0.15 2.41 8.06 -2.91 -0.02 2.38 16 46 H 0.14 3.07 8.04 -2.91 -0.02 3.04 16 47 H 0.04 1.83 7.56 -2.38 -0.02 1.81 16 48 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -65.28 379.39 4.82 -60.45 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.93 Total: 24.34 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 4.56 Total: -39.51 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -1.29 Total: -84.63 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.45 Total: -14.65 kcal Atomic # 14 Polarization: 51.94 SS G_CDS: 2.06 Total: 54.00 kcal Total: -65.28 4.82 -60.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256824726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.679 kcal (2) G-P(sol) polarization free energy of solvation -65.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds