Wall clock time and date at job start Tue Mar 31 2020 08:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47207 * 2 1 4 4 C 1.53005 * 109.46656 * 239.99992 * 2 1 3 5 5 H 1.08994 * 110.43363 * 62.54539 * 4 2 1 6 6 C 1.54890 * 110.48069 * 185.22630 * 4 2 1 7 7 C 1.54897 * 102.74507 * 156.62091 * 6 4 2 8 8 C 1.54263 * 104.19522 * 322.05391 * 7 6 4 9 9 C 1.53878 * 106.59815 * 23.61346 * 8 7 6 10 10 H 1.09001 * 110.02775 * 240.71536 * 9 8 7 11 11 N 1.46893 * 110.07372 * 119.30557 * 9 8 7 12 12 C 1.46903 * 111.00086 * 87.80748 * 11 9 8 13 13 C 1.50698 * 109.47006 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.97111 * 90.00120 * 13 12 11 15 15 C 1.38278 * 120.14211 * 179.97438 * 14 13 12 16 16 C 1.38126 * 120.06730 * 359.97396 * 15 14 13 17 17 C 1.38858 * 119.93114 * 0.02562 * 16 15 14 18 18 O 1.35746 * 120.06812 * 180.02562 * 17 16 15 19 19 C 1.34837 * 117.00061 * 354.45911 * 18 17 16 20 20 H 1.07991 * 119.99974 * 5.06118 * 19 18 17 21 21 C 1.38657 * 119.99570 * 185.05712 * 19 18 17 22 22 N 1.31551 * 120.00349 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99460 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46977 * 60.00243 * 23 21 19 25 25 H 1.48497 * 109.46876 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47373 * 300.00449 * 23 21 19 27 27 C 1.38079 * 119.96532 * 269.72693 * 13 12 11 28 28 H 1.09002 * 109.47004 * 59.99975 * 1 2 3 29 29 H 1.09000 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47056 * 299.99905 * 1 2 3 31 31 H 1.09002 * 109.47004 * 120.00025 * 2 1 3 32 32 H 1.09001 * 109.47035 * 60.00083 * 3 2 1 33 33 H 1.09000 * 109.46696 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47159 * 299.99930 * 3 2 1 35 35 H 1.08999 * 110.75553 * 274.93287 * 6 4 2 36 36 H 1.09002 * 110.76167 * 38.30712 * 6 4 2 37 37 H 1.09004 * 110.48053 * 203.37347 * 7 6 4 38 38 H 1.08997 * 110.48261 * 80.73795 * 7 6 4 39 39 H 1.08993 * 110.03408 * 264.32665 * 8 7 6 40 40 H 1.09002 * 110.06778 * 142.91545 * 8 7 6 41 41 H 1.00901 * 110.99982 * 211.76394 * 11 9 8 42 42 H 1.09002 * 109.47098 * 299.99685 * 12 11 9 43 43 H 1.08998 * 109.47027 * 60.00307 * 12 11 9 44 44 H 1.08001 * 119.92670 * 359.97438 * 14 13 12 45 45 H 1.07991 * 119.96522 * 179.97438 * 15 14 13 46 46 H 1.07999 * 120.03381 * 180.02562 * 16 15 14 47 47 H 0.97004 * 120.00058 * 179.97438 * 22 21 19 48 48 H 1.08003 * 120.03281 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.7227 -0.1942 -2.1491 6 6 3.5829 -0.8505 -1.2087 7 6 3.8492 -2.0598 -2.1393 8 6 2.6890 -3.0311 -1.8388 9 6 1.5386 -2.1800 -1.2729 10 1 1.2943 -2.5073 -0.2623 11 7 0.3563 -2.2918 -2.1374 12 6 -0.4752 -3.4381 -1.7465 13 6 -1.6755 -3.5206 -2.6540 14 6 -1.6101 -4.2611 -3.8206 15 6 -2.7095 -4.3397 -4.6556 16 6 -3.8770 -3.6790 -4.3267 17 6 -3.9459 -2.9349 -3.1563 18 8 -5.0921 -2.2849 -2.8301 19 6 -6.0882 -2.3070 -3.7386 20 1 -5.9844 -2.8933 -4.6395 21 6 -7.2457 -1.5768 -3.5160 22 7 -7.3719 -0.8622 -2.4187 23 14 -8.6254 -1.6068 -4.7750 24 1 -9.1079 -3.0006 -4.9474 25 1 -9.7433 -0.7500 -4.3047 26 1 -8.1214 -1.0933 -6.0741 27 6 -2.8413 -2.8617 -2.3174 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 4.0563 0.0499 -1.6003 36 1 3.9266 -1.0596 -0.1957 37 1 4.8063 -2.5226 -1.8988 38 1 3.8262 -1.7495 -3.1839 39 1 3.0028 -3.7712 -1.1029 40 1 2.3702 -3.5278 -2.7552 41 1 -0.1796 -1.4369 -2.1295 42 1 0.1075 -4.3553 -1.8311 43 1 -0.8066 -3.3118 -0.7158 44 1 -0.6985 -4.7789 -4.0797 45 1 -2.6552 -4.9183 -5.5658 46 1 -4.7355 -3.7412 -4.9790 47 1 -8.1816 -0.3511 -2.2632 48 1 -2.8933 -2.2877 -1.4040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319894708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:14 Heat of formation + Delta-G solvation = -30.824022 kcal Electronic energy + Delta-G solvation = -24762.822876 eV Core-core repulsion = 21395.937239 eV Total energy + Delta-G solvation = -3366.885636 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.58865 -38.91319 -36.73890 -34.82557 -34.11578 -32.25612 -30.59321 -29.03400 -28.04698 -27.40779 -26.69952 -25.34522 -24.13511 -21.54929 -21.47347 -20.77791 -19.99498 -19.61277 -17.61340 -16.99617 -16.28112 -15.62432 -15.04558 -14.81352 -14.59044 -14.40363 -14.33265 -13.86234 -13.70699 -13.48713 -13.40611 -13.14600 -12.67499 -12.60736 -12.49148 -12.26472 -11.92783 -11.70132 -11.62003 -11.36673 -11.22405 -11.17805 -11.03842 -10.86239 -10.69806 -10.64868 -10.61553 -10.56454 -10.45885 -10.40839 -10.31548 -9.31674 -8.81399 -8.32746 -8.01192 -7.19259 -6.42346 -4.01632 2.14425 2.43055 3.14387 3.15666 3.18159 3.98281 4.23990 4.40787 4.48959 4.62101 4.79317 4.92276 5.05385 5.11580 5.12948 5.19877 5.32021 5.35398 5.43388 5.48336 5.51393 5.57052 5.60532 5.62760 5.70832 5.78439 5.80403 5.83020 5.86855 5.91194 5.98879 6.00597 6.03400 6.05526 6.16938 6.21426 6.23285 6.28788 6.35090 6.37302 6.70009 6.94578 7.10014 7.21679 7.32476 7.42692 7.46390 7.57458 7.86333 8.02663 9.03512 9.74177 10.75829 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.003124 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.123969 B = 8960.283175 C =10117.803019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.090 4.090 5 H 0.084 0.916 6 C -0.116 4.116 7 C -0.121 4.121 8 C -0.117 4.117 9 C 0.087 3.913 10 H 0.045 0.955 11 N -0.677 5.677 12 C 0.106 3.894 13 C -0.046 4.046 14 C -0.189 4.189 15 C -0.077 4.077 16 C -0.232 4.232 17 C 0.153 3.847 18 O -0.180 6.180 19 C -0.392 4.392 20 H 0.091 0.909 21 C 0.039 3.961 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.185 4.185 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.345 0.655 42 H 0.074 0.926 43 H 0.033 0.967 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.125 0.875 47 H 0.270 0.730 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.324 -0.562 2.881 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.109 4.109 5 H 0.102 0.898 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.155 4.155 9 C -0.023 4.023 10 H 0.063 0.937 11 N -0.310 5.310 12 C -0.023 4.023 13 C -0.046 4.046 14 C -0.208 4.208 15 C -0.096 4.096 16 C -0.251 4.251 17 C 0.100 3.900 18 O -0.084 6.084 19 C -0.468 4.468 20 H 0.108 0.892 21 C -0.165 4.165 22 N -0.500 5.500 23 Si 0.764 3.236 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.195 1.195 27 C -0.205 4.205 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.165 0.835 42 H 0.092 0.908 43 H 0.051 0.949 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.143 0.857 47 H 0.080 0.920 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 19.393 -0.621 2.713 19.592 hybrid contribution -1.235 0.251 0.095 1.263 sum 18.159 -0.371 2.808 18.378 Atomic orbital electron populations 1.21953 0.94971 1.01998 1.02291 1.21187 0.95862 0.96187 0.97608 1.21838 1.00782 0.95929 1.01797 1.22268 0.95278 0.94994 0.98383 0.89762 1.22495 0.95140 0.98136 0.99620 1.22308 0.97849 0.95996 0.99754 1.22210 0.94385 0.97472 1.01439 1.22206 0.91201 0.94623 0.94242 0.93666 1.60718 1.09096 1.07189 1.53953 1.20833 0.91700 0.94591 0.95160 1.19183 0.92985 0.97082 0.95400 1.20409 0.98348 1.05550 0.96508 1.20742 0.92931 0.97789 0.98107 1.21183 0.99497 1.04446 1.00006 1.19302 0.87284 0.91117 0.92336 1.83975 1.18835 1.63647 1.41955 1.21263 0.93920 1.30269 1.01359 0.89199 1.25262 0.98075 0.95481 0.97644 1.70026 1.27760 1.27673 1.24542 0.85804 0.79497 0.78652 0.79612 1.19539 1.20307 1.19514 1.20022 0.91989 1.06797 1.01698 0.92156 0.92683 0.92565 0.91475 0.92880 0.92731 0.92591 0.91702 0.91678 0.92178 0.91568 0.92561 0.90501 0.83454 0.90765 0.94902 0.87673 0.87555 0.85710 0.92048 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.02 37.16 0.30 -1.39 16 2 C -0.09 -0.85 2.31 -90.62 -0.21 -1.06 16 3 C -0.15 -1.24 9.03 37.16 0.34 -0.91 16 4 C -0.09 -0.89 1.92 -88.96 -0.17 -1.06 16 5 H 0.08 0.93 7.96 -51.93 -0.41 0.52 16 6 C -0.12 -0.98 5.45 -24.73 -0.13 -1.12 16 7 C -0.12 -1.07 6.83 -25.07 -0.17 -1.25 16 8 C -0.12 -1.19 6.55 -25.61 -0.17 -1.36 16 9 C 0.09 0.96 1.96 -66.60 -0.13 0.82 16 10 H 0.05 0.51 7.23 -51.93 -0.38 0.14 16 11 N -0.68 -8.98 5.91 -106.81 -0.63 -9.62 16 12 C 0.11 1.52 5.64 -4.98 -0.03 1.49 16 13 C -0.05 -0.82 5.39 -104.65 -0.56 -1.39 16 14 C -0.19 -3.36 9.70 -39.53 -0.38 -3.74 16 15 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 16 C -0.23 -5.13 9.17 -39.39 -0.36 -5.49 16 17 C 0.15 3.73 6.65 -39.11 -0.26 3.47 16 18 O -0.18 -5.19 9.76 0.04 0.00 -5.19 16 19 C -0.39 -11.06 9.49 30.89 0.29 -10.76 16 20 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 23 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 C -0.19 -3.93 9.64 -39.39 -0.38 -4.30 16 28 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 29 H 0.05 0.65 6.53 -51.93 -0.34 0.31 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.42 7.34 -51.93 -0.38 0.03 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.51 8.00 -51.93 -0.42 0.10 16 36 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 41 H 0.35 4.86 6.81 -39.29 -0.27 4.59 16 42 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 43 H 0.03 0.47 8.01 -51.93 -0.42 0.05 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 46 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 48 H 0.11 2.31 8.06 -52.48 -0.42 1.88 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -29.60 377.75 -9.94 -39.54 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -8.20 Total: 7.57 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -2.53 Total: -28.90 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.13 Total: -34.36 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.60 -9.94 -39.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319894708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.713 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds