Wall clock time and date at job start Tue Mar 31 2020 08:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47207 * 2 1 4 4 C 1.53005 * 109.46656 * 239.99992 * 2 1 3 5 5 H 1.08994 * 110.43363 * 62.54539 * 4 2 1 6 6 C 1.54890 * 110.48069 * 185.22630 * 4 2 1 7 7 C 1.54897 * 102.74507 * 156.62091 * 6 4 2 8 8 C 1.54263 * 104.19522 * 322.05391 * 7 6 4 9 9 C 1.53878 * 106.59815 * 23.61346 * 8 7 6 10 10 H 1.09001 * 110.02775 * 240.71536 * 9 8 7 11 11 N 1.46893 * 110.07372 * 119.30557 * 9 8 7 12 12 C 1.46903 * 111.00086 * 87.80748 * 11 9 8 13 13 C 1.50698 * 109.47006 * 180.02562 * 12 11 9 14 14 C 1.38328 * 119.97111 * 90.00120 * 13 12 11 15 15 C 1.38278 * 120.14211 * 179.97438 * 14 13 12 16 16 C 1.38126 * 120.06730 * 359.97396 * 15 14 13 17 17 C 1.38858 * 119.93114 * 0.02562 * 16 15 14 18 18 O 1.35746 * 120.06812 * 180.02562 * 17 16 15 19 19 C 1.34837 * 117.00061 * 354.45911 * 18 17 16 20 20 H 1.07991 * 119.99974 * 5.06118 * 19 18 17 21 21 C 1.38657 * 119.99570 * 185.05712 * 19 18 17 22 22 N 1.31551 * 120.00349 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99460 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46977 * 60.00243 * 23 21 19 25 25 H 1.48497 * 109.46876 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47373 * 300.00449 * 23 21 19 27 27 C 1.38079 * 119.96532 * 269.72693 * 13 12 11 28 28 H 1.09002 * 109.47004 * 59.99975 * 1 2 3 29 29 H 1.09000 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47056 * 299.99905 * 1 2 3 31 31 H 1.09002 * 109.47004 * 120.00025 * 2 1 3 32 32 H 1.09001 * 109.47035 * 60.00083 * 3 2 1 33 33 H 1.09000 * 109.46696 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47159 * 299.99930 * 3 2 1 35 35 H 1.08999 * 110.75553 * 274.93287 * 6 4 2 36 36 H 1.09002 * 110.76167 * 38.30712 * 6 4 2 37 37 H 1.09004 * 110.48053 * 203.37347 * 7 6 4 38 38 H 1.08997 * 110.48261 * 80.73795 * 7 6 4 39 39 H 1.08993 * 110.03408 * 264.32665 * 8 7 6 40 40 H 1.09002 * 110.06778 * 142.91545 * 8 7 6 41 41 H 1.00901 * 110.99982 * 211.76394 * 11 9 8 42 42 H 1.09002 * 109.47098 * 299.99685 * 12 11 9 43 43 H 1.08998 * 109.47027 * 60.00307 * 12 11 9 44 44 H 1.08001 * 119.92670 * 359.97438 * 14 13 12 45 45 H 1.07991 * 119.96522 * 179.97438 * 15 14 13 46 46 H 1.07999 * 120.03381 * 180.02562 * 16 15 14 47 47 H 0.97004 * 120.00058 * 179.97438 * 22 21 19 48 48 H 1.08003 * 120.03281 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.7227 -0.1942 -2.1491 6 6 3.5829 -0.8505 -1.2087 7 6 3.8492 -2.0598 -2.1393 8 6 2.6890 -3.0311 -1.8388 9 6 1.5386 -2.1800 -1.2729 10 1 1.2943 -2.5073 -0.2623 11 7 0.3563 -2.2918 -2.1374 12 6 -0.4752 -3.4381 -1.7465 13 6 -1.6755 -3.5206 -2.6540 14 6 -1.6101 -4.2611 -3.8206 15 6 -2.7095 -4.3397 -4.6556 16 6 -3.8770 -3.6790 -4.3267 17 6 -3.9459 -2.9349 -3.1563 18 8 -5.0921 -2.2849 -2.8301 19 6 -6.0882 -2.3070 -3.7386 20 1 -5.9844 -2.8933 -4.6395 21 6 -7.2457 -1.5768 -3.5160 22 7 -7.3719 -0.8622 -2.4187 23 14 -8.6254 -1.6068 -4.7750 24 1 -9.1079 -3.0006 -4.9474 25 1 -9.7433 -0.7500 -4.3047 26 1 -8.1214 -1.0933 -6.0741 27 6 -2.8413 -2.8617 -2.3174 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 4.0563 0.0499 -1.6003 36 1 3.9266 -1.0596 -0.1957 37 1 4.8063 -2.5226 -1.8988 38 1 3.8262 -1.7495 -3.1839 39 1 3.0028 -3.7712 -1.1029 40 1 2.3702 -3.5278 -2.7552 41 1 -0.1796 -1.4369 -2.1295 42 1 0.1075 -4.3553 -1.8311 43 1 -0.8066 -3.3118 -0.7158 44 1 -0.6985 -4.7789 -4.0797 45 1 -2.6552 -4.9183 -5.5658 46 1 -4.7355 -3.7412 -4.9790 47 1 -8.1816 -0.3511 -2.2632 48 1 -2.8933 -2.2877 -1.4040 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319894708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:14 Heat of formation + Delta-G solvation = -46.598325 kcal Electronic energy + Delta-G solvation = -24763.506901 eV Core-core repulsion = 21395.937239 eV Total energy + Delta-G solvation = -3367.569662 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = -3.51 seconds Orbital eigenvalues (eV) -40.86606 -40.25290 -38.42684 -35.86924 -35.05690 -34.27328 -32.00326 -30.70974 -28.85240 -28.36971 -27.66447 -27.25074 -25.40951 -23.18676 -22.37663 -22.21636 -20.88515 -20.47432 -19.45826 -18.77198 -17.30265 -16.74068 -16.46407 -16.34318 -16.08419 -15.70599 -15.39909 -15.38437 -15.10904 -14.79181 -14.28354 -14.20110 -14.05910 -13.96305 -13.57199 -13.44372 -13.15148 -13.08304 -12.95832 -12.72103 -12.40297 -12.25963 -12.24755 -12.14987 -12.00274 -11.95892 -11.75843 -11.53700 -11.38211 -11.22817 -11.19702 -11.14300 -10.79482 -9.71722 -9.29842 -8.97627 -8.46907 -6.15469 0.52562 0.76476 1.34283 1.45290 1.50565 2.17627 2.79731 3.08842 3.40297 3.51287 3.61903 3.73233 3.89482 3.98655 4.11195 4.15134 4.28972 4.32904 4.35579 4.44313 4.54243 4.62110 4.64920 4.68603 4.69953 4.74630 4.75046 4.77533 4.90434 4.92622 5.00038 5.06219 5.09908 5.13355 5.15028 5.20701 5.22828 5.30062 5.31854 5.36549 5.44374 5.47433 5.60564 5.66108 5.73842 5.80926 6.02589 6.17106 6.26076 6.43531 6.97826 7.79057 8.76222 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.003124 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.123969 B = 8960.283175 C =10117.803019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.088 4.088 5 H 0.070 0.930 6 C -0.110 4.110 7 C -0.119 4.119 8 C -0.115 4.115 9 C 0.086 3.914 10 H 0.044 0.956 11 N -0.680 5.680 12 C 0.112 3.888 13 C -0.036 4.036 14 C -0.171 4.171 15 C -0.073 4.073 16 C -0.245 4.245 17 C 0.113 3.887 18 O -0.234 6.234 19 C -0.415 4.415 20 H 0.101 0.899 21 C -0.023 4.023 22 N -0.921 5.921 23 Si 1.018 2.982 24 H -0.257 1.257 25 H -0.271 1.271 26 H -0.258 1.258 27 C -0.196 4.196 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.338 0.662 42 H 0.095 0.905 43 H 0.032 0.968 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.118 0.882 47 H 0.272 0.728 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.034 -1.895 1.783 22.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.106 4.106 5 H 0.088 0.912 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.153 4.153 9 C -0.023 4.023 10 H 0.062 0.938 11 N -0.312 5.312 12 C -0.017 4.017 13 C -0.037 4.037 14 C -0.190 4.190 15 C -0.090 4.090 16 C -0.264 4.264 17 C 0.063 3.937 18 O -0.141 6.141 19 C -0.491 4.491 20 H 0.118 0.882 21 C -0.220 4.220 22 N -0.560 5.560 23 Si 0.837 3.163 24 H -0.181 1.181 25 H -0.196 1.196 26 H -0.182 1.182 27 C -0.216 4.216 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.157 0.843 42 H 0.113 0.887 43 H 0.050 0.950 44 H 0.161 0.839 45 H 0.162 0.838 46 H 0.136 0.864 47 H 0.081 0.919 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 22.166 -1.988 1.607 22.313 hybrid contribution -1.772 0.544 0.458 1.910 sum 20.394 -1.443 2.065 20.549 Atomic orbital electron populations 1.21947 0.96512 1.00971 1.01737 1.21152 0.94395 0.96991 0.97771 1.21817 1.01618 0.95058 1.01624 1.22222 0.96547 0.94055 0.97825 0.91165 1.22481 0.93641 0.98466 1.00218 1.22296 0.98031 0.95803 0.99506 1.22200 0.94323 0.97727 1.01097 1.22302 0.90489 0.95742 0.93779 0.93795 1.60769 1.09284 1.06406 1.54693 1.20814 0.90643 0.96033 0.94205 1.19579 0.92854 0.95300 0.95959 1.20929 0.99161 1.03661 0.95200 1.21154 0.91616 0.96817 0.99453 1.21303 1.00851 1.04996 0.99281 1.19856 0.87224 0.92262 0.94310 1.83937 1.20489 1.66253 1.43386 1.21778 0.94528 1.30869 1.01898 0.88207 1.26576 1.00717 0.94723 0.99964 1.70178 1.28956 1.29635 1.27210 0.84667 0.75596 0.79329 0.76749 1.18125 1.19590 1.18194 1.20209 0.92563 1.07516 1.01287 0.93410 0.93918 0.92438 0.90762 0.92632 0.91336 0.93252 0.90836 0.90676 0.90651 0.92142 0.91493 0.91598 0.84349 0.88677 0.94951 0.83898 0.83766 0.86446 0.91879 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.02 71.98 0.58 -2.85 16 2 C -0.08 -1.50 2.31 -10.79 -0.02 -1.52 16 3 C -0.14 -2.25 9.03 71.98 0.65 -1.60 16 4 C -0.09 -1.58 1.92 -9.72 -0.02 -1.60 16 5 H 0.07 1.49 7.96 -2.39 -0.02 1.47 16 6 C -0.11 -1.56 5.45 31.89 0.17 -1.39 16 7 C -0.12 -1.76 6.83 31.67 0.22 -1.54 16 8 C -0.12 -2.02 6.55 31.32 0.21 -1.82 16 9 C 0.09 1.73 1.96 45.64 0.09 1.82 16 10 H 0.04 0.92 7.23 -2.39 -0.02 0.90 16 11 N -0.68 -17.12 5.91 -491.84 -2.91 -20.03 16 12 C 0.11 3.01 5.64 85.56 0.48 3.49 16 13 C -0.04 -1.26 5.39 -19.88 -0.11 -1.37 16 14 C -0.17 -5.51 9.70 22.30 0.22 -5.30 16 15 C -0.07 -2.55 10.04 22.25 0.22 -2.33 16 16 C -0.24 -10.93 9.17 22.39 0.21 -10.73 16 17 C 0.11 5.79 6.65 22.58 0.15 5.94 16 18 O -0.23 -14.37 9.76 -22.77 -0.22 -14.59 16 19 C -0.41 -24.59 9.49 67.92 0.64 -23.95 16 20 H 0.10 5.44 5.20 -2.92 -0.02 5.42 16 21 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 22 N -0.92 -57.29 13.67 21.61 0.30 -56.99 16 23 Si 1.02 43.40 29.55 68.60 2.03 45.43 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 27 C -0.20 -8.57 9.64 22.39 0.22 -8.35 16 28 H 0.05 1.15 8.05 -2.39 -0.02 1.13 16 29 H 0.04 1.03 6.53 -2.39 -0.02 1.02 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.88 7.34 -2.39 -0.02 0.87 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.94 8.00 -2.39 -0.02 0.92 16 36 H 0.07 0.95 8.04 -2.39 -0.02 0.93 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.32 7.92 -2.39 -0.02 1.30 16 41 H 0.34 9.48 6.81 -89.69 -0.61 8.87 16 42 H 0.09 2.22 8.08 -2.39 -0.02 2.20 16 43 H 0.03 0.89 8.01 -2.39 -0.02 0.87 16 44 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 45 H 0.14 3.99 8.06 -2.92 -0.02 3.97 16 46 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 47 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 48 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -68.54 377.75 3.88 -64.67 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.32 Total: 35.43 kcal Atomic # 6 Polarization: -58.28 SS G_CDS: 4.37 Total: -53.92 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.61 Total: -77.02 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.22 Total: -14.59 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -68.54 3.88 -64.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319894708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.067 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.51 seconds