Wall clock time and date at job start Tue Mar 31 2020 10:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47048 * 2 1 4 4 H 1.08994 * 109.46901 * 54.99916 * 3 2 1 5 5 C 1.53003 * 109.46972 * 295.00076 * 3 2 1 6 6 C 1.52996 * 109.47060 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46908 * 60.00072 * 6 5 3 8 8 H 1.09001 * 109.46721 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46935 * 60.00243 * 7 6 5 10 10 C 1.52993 * 109.47174 * 299.99833 * 7 6 5 11 11 C 1.52996 * 109.47078 * 175.00361 * 3 2 1 12 12 H 1.09003 * 109.47681 * 59.99851 * 11 3 2 13 13 N 1.46504 * 109.47189 * 299.99951 * 11 3 2 14 14 C 1.39778 * 120.00190 * 155.00221 * 13 11 3 15 15 C 1.38946 * 120.00780 * 359.72274 * 14 13 11 16 16 C 1.38013 * 119.99776 * 179.71865 * 15 14 13 17 17 C 1.38904 * 119.99929 * 0.55961 * 16 15 14 18 18 O 1.35799 * 119.99082 * 179.69880 * 17 16 15 19 19 C 1.34811 * 116.99647 * 174.48128 * 18 17 16 20 20 H 1.07995 * 120.00681 * 5.05736 * 19 18 17 21 21 C 1.38622 * 119.99411 * 185.05805 * 19 18 17 22 22 N 1.31582 * 120.00333 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47146 * 60.00051 * 23 21 19 25 25 H 1.48497 * 109.47315 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47053 * 300.00211 * 23 21 19 27 27 C 1.38900 * 120.01303 * 359.71917 * 17 16 15 28 28 C 1.38001 * 120.00617 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47511 * 60.00199 * 1 2 3 30 30 H 1.09001 * 109.46639 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46950 * 299.99764 * 1 2 3 32 32 H 1.08996 * 109.47057 * 120.00082 * 2 1 3 33 33 H 1.09003 * 109.47045 * 240.00068 * 2 1 3 34 34 H 1.09003 * 109.47006 * 300.00242 * 5 3 2 35 35 H 1.09003 * 109.47043 * 59.99786 * 5 3 2 36 36 H 1.09006 * 109.47349 * 300.00575 * 6 5 3 37 37 H 1.08999 * 109.47487 * 179.97438 * 6 5 3 38 38 H 1.08996 * 109.46863 * 299.99639 * 9 7 6 39 39 H 1.08998 * 109.47403 * 59.99695 * 9 7 6 40 40 H 1.08994 * 109.46930 * 180.02562 * 9 7 6 41 41 H 1.08996 * 109.47701 * 300.00341 * 10 7 6 42 42 H 1.08998 * 109.47678 * 179.97438 * 10 7 6 43 43 H 0.97003 * 119.99594 * 335.00492 * 13 11 3 44 44 H 1.08002 * 119.99956 * 0.02562 * 15 14 13 45 45 H 1.07993 * 120.00092 * 180.30453 * 16 15 14 46 46 H 0.97002 * 120.00084 * 179.97438 * 22 21 19 47 47 H 1.08003 * 119.99312 * 180.02562 * 27 17 16 48 48 H 1.08007 * 120.00043 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 2.1446 3.5692 -1.3071 7 6 3.6695 3.5716 -1.1811 8 1 4.0323 4.5994 -1.1805 9 6 4.2800 2.8154 -2.3628 10 6 4.0743 2.8876 0.1262 11 6 3.5648 1.4444 0.1256 12 1 3.9995 0.9053 -0.7162 13 7 3.9525 0.7894 1.3774 14 6 5.2150 0.2015 1.4968 15 6 6.1003 0.2331 0.4264 16 6 7.3490 -0.3423 0.5464 17 6 7.7163 -0.9633 1.7334 18 8 8.9427 -1.5348 1.8493 19 6 9.2801 -2.0192 3.0612 20 1 8.5577 -2.0169 3.8640 21 6 10.5545 -2.5202 3.2771 22 7 11.4345 -2.5235 2.2989 23 14 11.0223 -3.1908 4.9567 24 1 10.1277 -4.3240 5.3040 25 1 12.4298 -3.6632 4.9266 26 1 10.8811 -2.1187 5.9745 27 6 6.8293 -1.0002 2.8017 28 6 5.5826 -0.4203 2.6838 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0698 1.5875 -2.1492 35 1 0.5488 2.1252 -1.3969 36 1 1.7097 4.1080 -0.4652 37 1 1.8566 4.0565 -2.2387 38 1 3.9170 1.7876 -2.3629 39 1 3.9916 3.3027 -3.2941 40 1 5.3662 2.8167 -2.2728 41 1 3.6393 3.4263 0.9680 42 1 5.1606 2.8889 0.2158 43 1 3.3329 0.7637 2.1234 44 1 5.8131 0.7124 -0.4979 45 1 8.0389 -0.3134 -0.2838 46 1 12.3264 -2.8738 2.4501 47 1 7.1154 -1.4827 3.7246 48 1 4.8931 -0.4486 3.5147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321142303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:41 Heat of formation + Delta-G solvation = -27.425893 kcal Electronic energy + Delta-G solvation = -25103.879329 eV Core-core repulsion = 21737.141046 eV Total energy + Delta-G solvation = -3366.738283 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.09122 -38.72679 -36.71455 -34.85718 -33.81432 -32.02965 -30.34830 -30.05026 -29.39775 -26.88776 -26.62832 -25.00769 -23.78055 -22.59162 -21.72638 -20.56706 -20.45465 -18.88958 -17.78030 -17.06844 -16.44953 -15.91371 -14.95365 -14.77760 -14.51780 -14.36412 -14.10893 -14.05565 -13.69804 -13.47636 -13.36378 -13.06386 -12.73545 -12.61179 -12.36947 -12.32522 -12.30060 -12.00982 -11.56529 -11.50963 -11.29062 -11.22924 -11.18484 -11.05252 -10.92139 -10.83695 -10.60397 -10.42259 -10.24338 -10.22669 -10.04999 -9.19170 -9.07879 -8.38385 -8.12012 -6.33380 -6.28581 -3.86187 2.25129 2.63123 3.20613 3.21833 3.24250 3.84588 4.08826 4.43285 4.52926 4.71591 4.75064 4.87374 4.94223 5.01831 5.17833 5.22815 5.24464 5.30376 5.38138 5.39598 5.47865 5.50339 5.56252 5.59006 5.70423 5.73896 5.79161 5.81840 5.87187 5.91807 5.93866 5.98792 6.01769 6.13195 6.15758 6.22378 6.26539 6.30742 6.35741 6.41788 6.61637 6.91446 6.97515 7.19462 7.36043 7.50451 7.70048 8.05980 8.15495 8.32421 9.16884 9.92215 10.89749 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024893 B = 0.002959 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.560304 B = 9458.800827 C =10101.307650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.069 0.931 5 C -0.114 4.114 6 C -0.115 4.115 7 C -0.090 4.090 8 H 0.067 0.933 9 C -0.154 4.154 10 C -0.131 4.131 11 C 0.165 3.835 12 H 0.077 0.923 13 N -0.753 5.753 14 C 0.129 3.871 15 C -0.147 4.147 16 C -0.150 4.150 17 C 0.112 3.888 18 O -0.189 6.189 19 C -0.386 4.386 20 H 0.087 0.913 21 C 0.036 3.964 22 N -0.870 5.870 23 Si 0.937 3.063 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.272 1.272 27 C -0.190 4.190 28 C -0.144 4.144 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.388 0.612 44 H 0.111 0.889 45 H 0.115 0.885 46 H 0.267 0.733 47 H 0.126 0.874 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.458 10.034 -5.970 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.110 4.110 4 H 0.088 0.912 5 C -0.152 4.152 6 C -0.152 4.152 7 C -0.109 4.109 8 H 0.085 0.915 9 C -0.211 4.211 10 C -0.170 4.170 11 C 0.058 3.942 12 H 0.095 0.905 13 N -0.387 5.387 14 C 0.031 3.969 15 C -0.169 4.169 16 C -0.170 4.170 17 C 0.060 3.940 18 O -0.095 6.095 19 C -0.463 4.463 20 H 0.104 0.896 21 C -0.167 4.167 22 N -0.507 5.507 23 Si 0.762 3.238 24 H -0.197 1.197 25 H -0.204 1.204 26 H -0.197 1.197 27 C -0.209 4.209 28 C -0.167 4.167 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.221 0.779 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.077 0.923 47 H 0.144 0.856 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.001 9.963 -6.339 23.226 hybrid contribution 0.001 -0.294 1.272 1.306 sum -20.000 9.669 -5.067 22.785 Atomic orbital electron populations 1.21823 0.96243 1.01378 1.01533 1.21546 0.95235 0.96161 1.02716 1.21406 0.95037 0.96240 0.98339 0.91231 1.21634 1.00511 0.95679 0.97334 1.21585 0.95463 0.96729 1.01448 1.21084 0.95146 0.99379 0.95263 0.91463 1.21963 1.00983 1.00743 0.97372 1.22104 1.01786 0.96445 0.96671 1.20761 0.93131 0.92166 0.88095 0.90522 1.44298 1.14728 1.64622 1.15078 1.17378 0.86321 0.98697 0.94493 1.20204 0.93829 1.05384 0.97467 1.20028 0.96800 1.03098 0.97086 1.19235 0.87178 0.93992 0.93635 1.83986 1.26689 1.65785 1.32994 1.21179 0.97932 1.40016 0.87208 0.89560 1.25201 0.94706 0.97558 0.99207 1.70039 1.05112 1.43999 1.31535 0.85851 0.77987 0.79190 0.80768 1.19707 1.20442 1.19701 1.20976 0.94188 1.05618 1.00165 1.20225 0.97088 1.03277 0.96077 0.92729 0.92999 0.93013 0.91347 0.92084 0.91488 0.91758 0.92180 0.92165 0.92055 0.92996 0.92468 0.92180 0.91299 0.77858 0.87119 0.86677 0.92294 0.85641 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.12 -1.10 5.32 -26.73 -0.14 -1.24 16 3 C -0.09 -0.82 1.76 -90.62 -0.16 -0.98 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.11 -0.89 4.68 -26.73 -0.13 -1.02 16 6 C -0.11 -0.89 5.45 -26.73 -0.15 -1.04 16 7 C -0.09 -0.81 3.19 -90.62 -0.29 -1.10 16 8 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 9 C -0.15 -1.39 8.50 37.16 0.32 -1.08 16 10 C -0.13 -1.42 4.98 -26.71 -0.13 -1.55 16 11 C 0.16 1.82 1.32 -67.90 -0.09 1.73 16 12 H 0.08 0.94 4.76 -51.93 -0.25 0.70 16 13 N -0.75 -9.87 4.48 -52.09 -0.23 -10.11 16 14 C 0.13 2.21 6.64 -83.71 -0.56 1.65 16 15 C -0.15 -2.67 8.86 -39.40 -0.35 -3.02 16 16 C -0.15 -3.25 9.99 -39.42 -0.39 -3.64 16 17 C 0.11 2.77 6.65 -39.09 -0.26 2.51 16 18 O -0.19 -5.57 9.76 -0.05 0.00 -5.57 16 19 C -0.39 -11.13 9.48 30.87 0.29 -10.84 16 20 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 21 C 0.04 1.02 5.49 -17.52 -0.10 0.93 16 22 N -0.87 -26.30 13.67 55.48 0.76 -25.54 16 23 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 C -0.19 -4.21 9.16 -39.42 -0.36 -4.57 16 28 C -0.14 -2.69 9.89 -39.40 -0.39 -3.08 16 29 H 0.05 0.39 6.56 -51.93 -0.34 0.05 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.72 7.30 -51.93 -0.38 0.34 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.55 6.43 -51.93 -0.33 0.21 16 35 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 43 H 0.39 4.58 8.41 -40.82 -0.34 4.23 16 44 H 0.11 1.75 6.14 -52.49 -0.32 1.43 16 45 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.13 2.80 5.63 -52.48 -0.30 2.51 16 48 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -30.69 365.21 -9.25 -39.94 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.74 Total: 6.79 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: -2.52 Total: -27.14 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.53 Total: -35.65 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: 0.00 Total: -5.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.69 -9.25 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321142303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.515 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds