Wall clock time and date at job start Tue Mar 31 2020 10:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47048 * 2 1 4 4 H 1.08994 * 109.46901 * 54.99916 * 3 2 1 5 5 C 1.53003 * 109.46972 * 295.00076 * 3 2 1 6 6 C 1.52996 * 109.47060 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46908 * 60.00072 * 6 5 3 8 8 H 1.09001 * 109.46721 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46935 * 60.00243 * 7 6 5 10 10 C 1.52993 * 109.47174 * 299.99833 * 7 6 5 11 11 C 1.52996 * 109.47078 * 175.00361 * 3 2 1 12 12 H 1.09003 * 109.47681 * 59.99851 * 11 3 2 13 13 N 1.46504 * 109.47189 * 299.99951 * 11 3 2 14 14 C 1.39778 * 120.00190 * 155.00221 * 13 11 3 15 15 C 1.38946 * 120.00780 * 359.72274 * 14 13 11 16 16 C 1.38013 * 119.99776 * 179.71865 * 15 14 13 17 17 C 1.38904 * 119.99929 * 0.55961 * 16 15 14 18 18 O 1.35799 * 119.99082 * 179.69880 * 17 16 15 19 19 C 1.34811 * 116.99647 * 174.48128 * 18 17 16 20 20 H 1.07995 * 120.00681 * 5.05736 * 19 18 17 21 21 C 1.38622 * 119.99411 * 185.05805 * 19 18 17 22 22 N 1.31582 * 120.00333 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47146 * 60.00051 * 23 21 19 25 25 H 1.48497 * 109.47315 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47053 * 300.00211 * 23 21 19 27 27 C 1.38900 * 120.01303 * 359.71917 * 17 16 15 28 28 C 1.38001 * 120.00617 * 0.02562 * 27 17 16 29 29 H 1.08996 * 109.47511 * 60.00199 * 1 2 3 30 30 H 1.09001 * 109.46639 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46950 * 299.99764 * 1 2 3 32 32 H 1.08996 * 109.47057 * 120.00082 * 2 1 3 33 33 H 1.09003 * 109.47045 * 240.00068 * 2 1 3 34 34 H 1.09003 * 109.47006 * 300.00242 * 5 3 2 35 35 H 1.09003 * 109.47043 * 59.99786 * 5 3 2 36 36 H 1.09006 * 109.47349 * 300.00575 * 6 5 3 37 37 H 1.08999 * 109.47487 * 179.97438 * 6 5 3 38 38 H 1.08996 * 109.46863 * 299.99639 * 9 7 6 39 39 H 1.08998 * 109.47403 * 59.99695 * 9 7 6 40 40 H 1.08994 * 109.46930 * 180.02562 * 9 7 6 41 41 H 1.08996 * 109.47701 * 300.00341 * 10 7 6 42 42 H 1.08998 * 109.47678 * 179.97438 * 10 7 6 43 43 H 0.97003 * 119.99594 * 335.00492 * 13 11 3 44 44 H 1.08002 * 119.99956 * 0.02562 * 15 14 13 45 45 H 1.07993 * 120.00092 * 180.30453 * 16 15 14 46 46 H 0.97002 * 120.00084 * 179.97438 * 22 21 19 47 47 H 1.08003 * 119.99312 * 180.02562 * 27 17 16 48 48 H 1.08007 * 120.00043 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 2.1446 3.5692 -1.3071 7 6 3.6695 3.5716 -1.1811 8 1 4.0323 4.5994 -1.1805 9 6 4.2800 2.8154 -2.3628 10 6 4.0743 2.8876 0.1262 11 6 3.5648 1.4444 0.1256 12 1 3.9995 0.9053 -0.7162 13 7 3.9525 0.7894 1.3774 14 6 5.2150 0.2015 1.4968 15 6 6.1003 0.2331 0.4264 16 6 7.3490 -0.3423 0.5464 17 6 7.7163 -0.9633 1.7334 18 8 8.9427 -1.5348 1.8493 19 6 9.2801 -2.0192 3.0612 20 1 8.5577 -2.0169 3.8640 21 6 10.5545 -2.5202 3.2771 22 7 11.4345 -2.5235 2.2989 23 14 11.0223 -3.1908 4.9567 24 1 10.1277 -4.3240 5.3040 25 1 12.4298 -3.6632 4.9266 26 1 10.8811 -2.1187 5.9745 27 6 6.8293 -1.0002 2.8017 28 6 5.5826 -0.4203 2.6838 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 2.0698 1.5875 -2.1492 35 1 0.5488 2.1252 -1.3969 36 1 1.7097 4.1080 -0.4652 37 1 1.8566 4.0565 -2.2387 38 1 3.9170 1.7876 -2.3629 39 1 3.9916 3.3027 -3.2941 40 1 5.3662 2.8167 -2.2728 41 1 3.6393 3.4263 0.9680 42 1 5.1606 2.8889 0.2158 43 1 3.3329 0.7637 2.1234 44 1 5.8131 0.7124 -0.4979 45 1 8.0389 -0.3134 -0.2838 46 1 12.3264 -2.8738 2.4501 47 1 7.1154 -1.4827 3.7246 48 1 4.8931 -0.4486 3.5147 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321142303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:40 Heat of formation + Delta-G solvation = -43.849260 kcal Electronic energy + Delta-G solvation = -25104.591499 eV Core-core repulsion = 21737.141046 eV Total energy + Delta-G solvation = -3367.450453 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.12721 -40.31143 -38.35127 -35.72255 -35.04890 -34.03344 -31.88298 -30.81088 -30.59585 -28.29171 -27.52096 -26.90858 -24.54426 -23.89802 -23.05475 -21.97021 -21.34698 -19.77290 -19.54399 -18.84318 -17.72445 -17.20190 -16.30832 -16.03835 -15.58961 -15.52386 -15.39705 -15.14176 -15.08472 -14.83808 -14.46092 -14.33417 -14.06541 -13.85510 -13.60199 -13.40838 -13.39006 -13.05352 -12.90658 -12.87959 -12.69569 -12.42611 -12.27375 -12.12177 -11.98203 -11.91454 -11.74293 -11.57275 -11.20885 -11.14552 -11.03663 -10.83653 -10.75526 -10.07334 -9.76028 -8.38626 -7.88690 -6.02212 0.59872 0.95821 1.36370 1.47867 1.52653 2.23164 2.67536 2.92432 3.26608 3.66126 3.69000 3.80402 3.97357 4.13470 4.17130 4.18023 4.20174 4.31006 4.47381 4.50003 4.54859 4.57221 4.60576 4.70316 4.73271 4.78488 4.84887 4.91984 4.99021 5.03432 5.07812 5.13517 5.15801 5.19832 5.21841 5.28580 5.31252 5.34240 5.41903 5.42121 5.46423 5.54765 5.57229 5.61216 5.66937 5.80115 6.02123 6.12237 6.67460 7.06276 7.10382 7.94631 8.85861 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024893 B = 0.002959 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.560304 B = 9458.800827 C =10101.307650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.082 4.082 4 H 0.078 0.922 5 C -0.111 4.111 6 C -0.111 4.111 7 C -0.087 4.087 8 H 0.070 0.930 9 C -0.154 4.154 10 C -0.127 4.127 11 C 0.161 3.839 12 H 0.068 0.932 13 N -0.738 5.738 14 C 0.160 3.840 15 C -0.145 4.145 16 C -0.156 4.156 17 C 0.061 3.939 18 O -0.243 6.243 19 C -0.407 4.407 20 H 0.098 0.902 21 C -0.029 4.029 22 N -0.928 5.928 23 Si 1.016 2.984 24 H -0.258 1.258 25 H -0.273 1.273 26 H -0.259 1.259 27 C -0.192 4.192 28 C -0.147 4.147 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.400 0.600 44 H 0.137 0.863 45 H 0.110 0.890 46 H 0.270 0.730 47 H 0.118 0.882 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.069 11.377 -5.396 27.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.101 4.101 4 H 0.096 0.904 5 C -0.149 4.149 6 C -0.148 4.148 7 C -0.106 4.106 8 H 0.089 0.911 9 C -0.211 4.211 10 C -0.166 4.166 11 C 0.056 3.944 12 H 0.085 0.915 13 N -0.371 5.371 14 C 0.059 3.941 15 C -0.168 4.168 16 C -0.175 4.175 17 C 0.011 3.989 18 O -0.151 6.151 19 C -0.484 4.484 20 H 0.115 0.885 21 C -0.225 4.225 22 N -0.567 5.567 23 Si 0.836 3.164 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.183 1.183 27 C -0.212 4.212 28 C -0.170 4.170 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.236 0.764 44 H 0.154 0.846 45 H 0.128 0.872 46 H 0.078 0.922 47 H 0.136 0.864 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.712 11.351 -5.778 26.916 hybrid contribution 0.794 -0.523 0.943 1.339 sum -22.918 10.828 -4.836 25.805 Atomic orbital electron populations 1.21790 0.94866 1.01646 1.02314 1.21525 0.96458 0.95980 1.01652 1.21341 0.92827 0.96406 0.99519 0.90390 1.21632 1.01454 0.95496 0.96314 1.21563 0.94034 0.96798 1.02412 1.21068 0.96384 0.99208 0.93936 0.91114 1.21971 1.00169 1.00839 0.98163 1.22041 1.00198 0.96295 0.98102 1.20945 0.95018 0.91975 0.86473 0.91451 1.44410 1.13086 1.63129 1.16458 1.17485 0.87271 0.96072 0.93304 1.20404 0.92616 1.04788 0.98960 1.20213 0.98138 1.03050 0.96130 1.19712 0.86869 0.96490 0.95802 1.83933 1.29228 1.68347 1.33641 1.21717 0.98762 1.40152 0.87722 0.88495 1.26528 0.94255 0.97739 1.03930 1.70201 1.05747 1.46377 1.34424 0.84685 0.77863 0.78894 0.74984 1.18234 1.19767 1.18295 1.21042 0.95230 1.05794 0.99134 1.20486 0.96218 1.02602 0.97677 0.91738 0.93089 0.92410 0.92648 0.92946 0.91729 0.90238 0.91589 0.90916 0.92279 0.91703 0.93773 0.91788 0.93697 0.76415 0.84573 0.87220 0.92159 0.86424 0.84407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 71.98 0.70 -1.14 16 2 C -0.12 -1.85 5.32 30.60 0.16 -1.69 16 3 C -0.08 -1.19 1.76 -10.79 -0.02 -1.21 16 4 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 5 C -0.11 -1.33 4.68 30.59 0.14 -1.19 16 6 C -0.11 -1.31 5.45 30.60 0.17 -1.14 16 7 C -0.09 -1.33 3.19 -10.79 -0.03 -1.37 16 8 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 9 C -0.15 -2.49 8.50 71.98 0.61 -1.88 16 10 C -0.13 -2.46 4.98 30.61 0.15 -2.31 16 11 C 0.16 3.13 1.32 45.01 0.06 3.19 16 12 H 0.07 1.50 4.76 -2.39 -0.01 1.49 16 13 N -0.74 -17.20 4.48 -318.71 -1.43 -18.63 16 14 C 0.16 5.17 6.64 38.21 0.25 5.42 16 15 C -0.15 -5.19 8.86 22.39 0.20 -4.99 16 16 C -0.16 -6.97 9.99 22.38 0.22 -6.75 16 17 C 0.06 3.16 6.65 22.59 0.15 3.31 16 18 O -0.24 -15.28 9.76 -23.09 -0.23 -15.51 16 19 C -0.41 -24.63 9.48 67.91 0.64 -23.98 16 20 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 21 C -0.03 -1.68 5.49 84.82 0.47 -1.21 16 22 N -0.93 -59.04 13.67 21.61 0.30 -58.75 16 23 Si 1.02 44.43 29.55 68.60 2.03 46.46 16 24 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 26 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 27 C -0.19 -8.69 9.16 22.37 0.20 -8.49 16 28 C -0.15 -5.25 9.89 22.38 0.22 -5.03 16 29 H 0.06 0.67 6.56 -2.39 -0.02 0.66 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 1.01 7.30 -2.39 -0.02 0.99 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.84 6.43 -2.39 -0.02 0.82 16 35 H 0.08 0.77 6.57 -2.39 -0.02 0.76 16 36 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 0.97 4.81 -2.39 -0.01 0.96 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.04 1.09 7.75 -2.39 -0.02 1.07 16 43 H 0.40 7.93 8.41 -92.71 -0.78 7.15 16 44 H 0.14 4.13 6.14 -2.91 -0.02 4.11 16 45 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 47 H 0.12 5.40 5.63 -2.91 -0.02 5.38 16 48 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -71.48 365.21 5.15 -66.33 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.17 Total: 30.54 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 4.30 Total: -50.45 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -1.13 Total: -77.37 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.23 Total: -15.51 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.48 5.15 -66.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321142303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.483 kcal (2) G-P(sol) polarization free energy of solvation -71.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds