Wall clock time and date at job start Tue Mar 31 2020 09:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46908 * 2 1 4 4 C 1.52996 * 109.46869 * 185.07307 * 3 2 1 5 5 H 1.09002 * 109.47480 * 54.72582 * 4 3 2 6 6 C 1.53002 * 109.47317 * 294.72411 * 4 3 2 7 7 C 1.53003 * 109.46790 * 305.12779 * 6 4 3 8 8 C 1.50707 * 109.46923 * 174.72171 * 4 3 2 9 9 O 1.21282 * 119.99997 * 5.31836 * 8 4 3 10 10 N 1.34777 * 119.99999 * 185.31617 * 8 4 3 11 11 C 1.46508 * 119.99907 * 5.80126 * 10 8 4 12 12 C 1.50697 * 109.46770 * 94.68914 * 11 10 8 13 13 H 1.08002 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99794 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00114 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99898 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47015 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46995 * 120.00177 * 16 14 12 19 19 H 1.48499 * 109.46982 * 239.99911 * 16 14 12 20 20 C 1.39920 * 120.00019 * 185.80685 * 10 8 4 21 21 C 1.38877 * 120.07024 * 7.45131 * 20 10 8 22 22 C 1.38110 * 119.92740 * 179.79064 * 21 20 10 23 23 C 1.38285 * 120.07315 * 0.49129 * 22 21 20 24 24 C 1.50695 * 119.92997 * 179.76693 * 23 22 21 25 25 C 1.38284 * 120.13984 * 359.73876 * 23 22 21 26 26 C 1.38116 * 120.06818 * 0.02794 * 25 23 22 27 27 H 1.08997 * 109.47343 * 60.00024 * 1 2 3 28 28 H 1.08998 * 109.46530 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46881 * 299.99833 * 1 2 3 30 30 H 1.08995 * 109.47028 * 240.00066 * 2 1 3 31 31 H 1.08997 * 109.47343 * 119.99976 * 2 1 3 32 32 H 1.09000 * 109.46997 * 65.07324 * 3 2 1 33 33 H 1.08995 * 109.46902 * 305.07576 * 3 2 1 34 34 H 1.08996 * 109.46685 * 65.12924 * 6 4 3 35 35 H 1.09004 * 109.47007 * 185.13046 * 6 4 3 36 36 H 1.09001 * 109.46509 * 185.43417 * 7 6 4 37 37 H 1.08996 * 109.47157 * 305.43345 * 7 6 4 38 38 H 1.08997 * 109.46774 * 65.43685 * 7 6 4 39 39 H 1.08995 * 109.46694 * 214.69007 * 11 10 8 40 40 H 1.09003 * 109.47065 * 334.69110 * 11 10 8 41 41 H 0.96999 * 120.00064 * 179.97438 * 15 14 12 42 42 H 1.07998 * 120.03148 * 0.03110 * 21 20 10 43 43 H 1.08000 * 119.96712 * 180.23659 * 22 21 20 44 44 H 1.09000 * 109.47289 * 269.97229 * 24 23 22 45 45 H 1.09001 * 109.47571 * 29.97461 * 24 23 22 46 46 H 1.09000 * 109.47109 * 149.97725 * 24 23 22 47 47 H 1.07998 * 119.96526 * 180.02562 * 25 23 22 48 48 H 1.07998 * 120.03473 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5647 1.4444 -0.1276 5 1 3.8561 0.8764 -1.0110 6 6 4.1814 0.8034 1.1173 7 6 3.6704 1.5223 2.3675 8 6 4.0561 2.8631 -0.2579 9 8 3.2771 3.7868 -0.1531 10 7 5.3612 3.1055 -0.4910 11 6 6.2793 1.9921 -0.7439 12 6 6.4162 1.7816 -2.2299 13 1 5.8740 2.4142 -2.9171 14 6 7.2344 0.7822 -2.7120 15 7 7.8959 0.0128 -1.8752 16 14 7.4047 0.5217 -4.5540 17 1 6.5636 1.5116 -5.2736 18 1 8.8252 0.6977 -4.9495 19 1 6.9603 -0.8515 -4.9029 20 6 5.8395 4.4204 -0.4913 21 6 5.0091 5.4630 -0.1009 22 6 5.4856 6.7593 -0.0982 23 6 6.7847 7.0209 -0.4933 24 6 7.2995 8.4372 -0.4941 25 6 7.6125 5.9856 -0.8872 26 6 7.1436 4.6865 -0.8875 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8935 -0.5138 0.8899 32 1 1.7528 1.9294 0.9319 33 1 1.6044 1.9819 -0.8410 34 1 3.8991 -0.2484 1.1620 35 1 5.2672 0.8864 1.0686 36 1 4.1821 1.1305 3.2465 37 1 3.8676 2.5906 2.2784 38 1 2.5976 1.3579 2.4681 39 1 7.2557 2.2225 -0.3181 40 1 5.8866 1.0856 -0.2832 41 1 8.4712 -0.6906 -2.2145 42 1 3.9932 5.2597 0.2039 43 1 4.8416 7.5700 0.2090 44 1 7.1058 8.8937 -1.4648 45 1 6.7928 9.0085 0.2837 46 1 8.3724 8.4339 -0.3019 47 1 8.6267 6.1931 -1.1948 48 1 7.7904 3.8784 -1.1956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584080730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:26 Heat of formation + Delta-G solvation = -24.728539 kcal Electronic energy + Delta-G solvation = -25886.077405 eV Core-core repulsion = 22519.456089 eV Total energy + Delta-G solvation = -3366.621316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = -0.02 seconds Orbital eigenvalues (eV) -40.42701 -38.33500 -36.15787 -35.41529 -32.89201 -32.68981 -31.18016 -30.29781 -28.57824 -27.58411 -26.23609 -24.57538 -23.51013 -22.56517 -21.70051 -21.16857 -19.80851 -18.34769 -16.87639 -16.66868 -16.02601 -15.71013 -15.15562 -14.70652 -14.50361 -14.26807 -13.94467 -13.56099 -13.43029 -13.28690 -13.14830 -12.89187 -12.74393 -12.53223 -12.27489 -11.89435 -11.87073 -11.74485 -11.58459 -11.38514 -11.28025 -11.02933 -10.98634 -10.81262 -10.73255 -10.51627 -10.45257 -10.24555 -10.21171 -10.13652 -9.85874 -9.02898 -8.70869 -8.52575 -8.29148 -7.04895 -6.26605 -4.34559 1.88131 2.05729 3.17316 3.24751 3.27276 3.33885 3.71012 4.26932 4.49734 4.93879 5.04438 5.06335 5.15065 5.32772 5.34964 5.35551 5.41076 5.48791 5.59916 5.63791 5.71579 5.82282 5.83726 5.88650 5.99492 6.00074 6.02086 6.10458 6.16564 6.19516 6.20819 6.24536 6.32529 6.34970 6.43757 6.47497 6.56640 6.65004 6.73248 6.83031 6.99555 7.04658 7.10278 7.21187 7.36633 7.66544 7.86294 7.92057 8.18465 8.68885 8.84356 9.33113 10.79251 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.006471 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.730407 B = 4325.756870 C = 6678.743448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.104 4.104 5 H 0.108 0.892 6 C -0.124 4.124 7 C -0.153 4.153 8 C 0.525 3.475 9 O -0.546 6.546 10 N -0.535 5.535 11 C 0.217 3.783 12 C -0.538 4.538 13 H 0.062 0.938 14 C 0.068 3.932 15 N -0.889 5.889 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.167 3.833 21 C -0.172 4.172 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.103 4.103 25 C -0.105 4.105 26 C -0.140 4.140 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.064 0.936 41 H 0.266 0.734 42 H 0.172 0.828 43 H 0.112 0.888 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.116 0.884 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 4.068 5.668 9.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.125 4.125 5 H 0.126 0.874 6 C -0.162 4.162 7 C -0.210 4.210 8 C 0.316 3.684 9 O -0.427 6.427 10 N -0.253 5.253 11 C 0.098 3.902 12 C -0.577 4.577 13 H 0.081 0.919 14 C -0.135 4.135 15 N -0.527 5.527 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.207 1.207 20 C 0.071 3.929 21 C -0.192 4.192 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.160 4.160 25 C -0.123 4.123 26 C -0.161 4.161 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.188 0.812 43 H 0.131 0.869 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.134 0.866 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.342 4.272 5.730 9.555 hybrid contribution 0.484 -0.315 -1.247 1.375 sum -5.858 3.957 4.483 8.371 Atomic orbital electron populations 1.21758 0.96227 1.01091 1.01662 1.21578 0.95404 0.97086 1.02249 1.21460 0.92994 0.96291 1.03015 1.21335 0.96455 0.93361 1.01300 0.87356 1.21758 1.01960 0.99668 0.92785 1.21859 1.00994 1.00699 0.97465 1.20723 0.81244 0.91490 0.74930 1.90303 1.55436 1.45258 1.51658 1.46028 1.09298 1.06408 1.63551 1.19986 0.88931 0.83658 0.97623 1.21440 1.28133 1.16794 0.91291 0.91944 1.24897 0.94968 0.95322 0.98348 1.69918 1.28650 1.19723 1.34402 0.86456 0.78141 0.78206 0.84874 1.19604 1.20715 1.20718 1.18069 0.93388 0.84408 0.97034 1.22460 1.03203 0.91307 1.02228 1.20856 0.94700 0.96361 1.00763 1.19754 0.94798 0.95238 1.03613 1.20653 1.00631 0.93305 1.01422 1.20734 0.99089 0.91974 1.00526 1.21133 0.95388 0.97525 1.02015 0.92856 0.93103 0.92978 0.91829 0.91852 0.91189 0.91652 0.90932 0.89696 0.92949 0.92905 0.92471 0.94091 0.91817 0.92419 0.81203 0.86947 0.92121 0.92351 0.92262 0.86637 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.13 -1.56 5.57 -26.72 -0.15 -1.71 16 3 C -0.10 -1.48 3.67 -26.73 -0.10 -1.58 16 4 C -0.10 -1.78 1.67 -91.77 -0.15 -1.93 16 5 H 0.11 2.03 7.73 -51.93 -0.40 1.63 16 6 C -0.12 -1.93 4.90 -26.73 -0.13 -2.06 16 7 C -0.15 -2.16 9.14 37.16 0.34 -1.82 16 8 C 0.52 10.61 5.79 -10.98 -0.06 10.55 16 9 O -0.55 -11.57 12.48 5.56 0.07 -11.50 16 10 N -0.53 -11.49 2.69 -114.73 -0.31 -11.80 16 11 C 0.22 4.99 3.87 -5.19 -0.02 4.97 16 12 C -0.54 -13.70 8.81 -34.44 -0.30 -14.00 16 13 H 0.06 1.68 7.81 -52.49 -0.41 1.26 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -23.55 13.29 55.43 0.74 -22.81 16 16 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.17 3.54 6.47 -83.69 -0.54 3.00 16 21 C -0.17 -3.42 8.98 -39.39 -0.35 -3.77 16 22 C -0.11 -1.86 9.69 -39.61 -0.38 -2.24 16 23 C -0.13 -2.17 5.88 -104.59 -0.62 -2.78 16 24 C -0.10 -1.28 10.01 36.00 0.36 -0.92 16 25 C -0.10 -1.83 9.69 -39.61 -0.38 -2.21 16 26 C -0.14 -2.85 9.04 -39.39 -0.36 -3.21 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.74 6.95 -51.93 -0.36 0.38 16 32 H 0.07 1.03 6.16 -51.93 -0.32 0.71 16 33 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 34 H 0.07 1.01 6.95 -51.93 -0.36 0.64 16 35 H 0.08 1.49 5.34 -51.93 -0.28 1.21 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.84 7.22 -51.93 -0.37 0.47 16 38 H 0.06 0.73 6.56 -51.93 -0.34 0.39 16 39 H 0.04 1.00 6.84 -51.93 -0.36 0.65 16 40 H 0.06 1.44 4.05 -51.93 -0.21 1.23 16 41 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.17 3.51 4.71 -55.23 -0.26 3.25 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 46 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 47 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 48 H 0.14 3.02 6.16 -52.49 -0.32 2.69 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -27.20 371.81 -9.27 -36.47 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.77 Total: 8.08 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.58 Total: -19.33 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.43 Total: -34.62 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.20 -9.27 -36.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584080730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.742 kcal (2) G-P(sol) polarization free energy of solvation -27.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.02 seconds