Wall clock time and date at job start Tue Mar 31 2020 09:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46908 * 2 1 4 4 C 1.52996 * 109.46869 * 185.07307 * 3 2 1 5 5 H 1.09002 * 109.47480 * 54.72582 * 4 3 2 6 6 C 1.53002 * 109.47317 * 294.72411 * 4 3 2 7 7 C 1.53003 * 109.46790 * 305.12779 * 6 4 3 8 8 C 1.50707 * 109.46923 * 174.72171 * 4 3 2 9 9 O 1.21282 * 119.99997 * 5.31836 * 8 4 3 10 10 N 1.34777 * 119.99999 * 185.31617 * 8 4 3 11 11 C 1.46508 * 119.99907 * 5.80126 * 10 8 4 12 12 C 1.50697 * 109.46770 * 94.68914 * 11 10 8 13 13 H 1.08002 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99794 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00114 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99898 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47015 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.46995 * 120.00177 * 16 14 12 19 19 H 1.48499 * 109.46982 * 239.99911 * 16 14 12 20 20 C 1.39920 * 120.00019 * 185.80685 * 10 8 4 21 21 C 1.38877 * 120.07024 * 7.45131 * 20 10 8 22 22 C 1.38110 * 119.92740 * 179.79064 * 21 20 10 23 23 C 1.38285 * 120.07315 * 0.49129 * 22 21 20 24 24 C 1.50695 * 119.92997 * 179.76693 * 23 22 21 25 25 C 1.38284 * 120.13984 * 359.73876 * 23 22 21 26 26 C 1.38116 * 120.06818 * 0.02794 * 25 23 22 27 27 H 1.08997 * 109.47343 * 60.00024 * 1 2 3 28 28 H 1.08998 * 109.46530 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46881 * 299.99833 * 1 2 3 30 30 H 1.08995 * 109.47028 * 240.00066 * 2 1 3 31 31 H 1.08997 * 109.47343 * 119.99976 * 2 1 3 32 32 H 1.09000 * 109.46997 * 65.07324 * 3 2 1 33 33 H 1.08995 * 109.46902 * 305.07576 * 3 2 1 34 34 H 1.08996 * 109.46685 * 65.12924 * 6 4 3 35 35 H 1.09004 * 109.47007 * 185.13046 * 6 4 3 36 36 H 1.09001 * 109.46509 * 185.43417 * 7 6 4 37 37 H 1.08996 * 109.47157 * 305.43345 * 7 6 4 38 38 H 1.08997 * 109.46774 * 65.43685 * 7 6 4 39 39 H 1.08995 * 109.46694 * 214.69007 * 11 10 8 40 40 H 1.09003 * 109.47065 * 334.69110 * 11 10 8 41 41 H 0.96999 * 120.00064 * 179.97438 * 15 14 12 42 42 H 1.07998 * 120.03148 * 0.03110 * 21 20 10 43 43 H 1.08000 * 119.96712 * 180.23659 * 22 21 20 44 44 H 1.09000 * 109.47289 * 269.97229 * 24 23 22 45 45 H 1.09001 * 109.47571 * 29.97461 * 24 23 22 46 46 H 1.09000 * 109.47109 * 149.97725 * 24 23 22 47 47 H 1.07998 * 119.96526 * 180.02562 * 25 23 22 48 48 H 1.07998 * 120.03473 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5647 1.4444 -0.1276 5 1 3.8561 0.8764 -1.0110 6 6 4.1814 0.8034 1.1173 7 6 3.6704 1.5223 2.3675 8 6 4.0561 2.8631 -0.2579 9 8 3.2771 3.7868 -0.1531 10 7 5.3612 3.1055 -0.4910 11 6 6.2793 1.9921 -0.7439 12 6 6.4162 1.7816 -2.2299 13 1 5.8740 2.4142 -2.9171 14 6 7.2344 0.7822 -2.7120 15 7 7.8959 0.0128 -1.8752 16 14 7.4047 0.5217 -4.5540 17 1 6.5636 1.5116 -5.2736 18 1 8.8252 0.6977 -4.9495 19 1 6.9603 -0.8515 -4.9029 20 6 5.8395 4.4204 -0.4913 21 6 5.0091 5.4630 -0.1009 22 6 5.4856 6.7593 -0.0982 23 6 6.7847 7.0209 -0.4933 24 6 7.2995 8.4372 -0.4941 25 6 7.6125 5.9856 -0.8872 26 6 7.1436 4.6865 -0.8875 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8935 -0.5138 0.8899 32 1 1.7528 1.9294 0.9319 33 1 1.6044 1.9819 -0.8410 34 1 3.8991 -0.2484 1.1620 35 1 5.2672 0.8864 1.0686 36 1 4.1821 1.1305 3.2465 37 1 3.8676 2.5906 2.2784 38 1 2.5976 1.3579 2.4681 39 1 7.2557 2.2225 -0.3181 40 1 5.8866 1.0856 -0.2832 41 1 8.4712 -0.6906 -2.2145 42 1 3.9932 5.2597 0.2039 43 1 4.8416 7.5700 0.2090 44 1 7.1058 8.8937 -1.4648 45 1 6.7928 9.0085 0.2837 46 1 8.3724 8.4339 -0.3019 47 1 8.6267 6.1931 -1.1948 48 1 7.7904 3.8784 -1.1956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584080730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:15 Heat of formation + Delta-G solvation = -35.876850 kcal Electronic energy + Delta-G solvation = -25886.560832 eV Core-core repulsion = 22519.456089 eV Total energy + Delta-G solvation = -3367.104744 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.99198 -39.76120 -37.46265 -37.09212 -34.72971 -33.88883 -32.54956 -31.77741 -29.78886 -29.41487 -27.51901 -25.78824 -25.34432 -23.84634 -23.20553 -22.44896 -21.17249 -19.81428 -18.81301 -18.27550 -17.65153 -17.06065 -16.60368 -16.35260 -16.09135 -15.59227 -15.31703 -14.92955 -14.71003 -14.50552 -14.42353 -14.36063 -14.17780 -13.98280 -13.71993 -13.26738 -13.19233 -12.98324 -12.93402 -12.81321 -12.71119 -12.57169 -12.52636 -12.22060 -12.04453 -11.88567 -11.87646 -11.85489 -11.61129 -11.45171 -11.25829 -10.70621 -10.64526 -10.13732 -9.77666 -8.64676 -8.23128 -6.40444 0.40380 0.56884 1.35230 1.38871 1.48893 1.71055 2.12821 2.37517 3.00111 3.03606 3.49432 3.81345 3.91794 4.06144 4.11648 4.23098 4.27254 4.27774 4.38917 4.42136 4.49724 4.58150 4.63718 4.69320 4.73056 4.80862 4.89546 4.91443 4.95643 4.97683 5.00451 5.04952 5.11096 5.16005 5.19504 5.24098 5.26539 5.29735 5.39476 5.44435 5.51921 5.56130 5.58243 5.63062 5.77228 5.85471 5.96102 6.32226 6.48135 6.72642 7.17780 7.31256 8.79153 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008721 B = 0.006471 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3209.730407 B = 4325.756870 C = 6678.743448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.100 4.100 5 H 0.089 0.911 6 C -0.119 4.119 7 C -0.146 4.146 8 C 0.517 3.483 9 O -0.559 6.559 10 N -0.542 5.542 11 C 0.234 3.766 12 C -0.546 4.546 13 H 0.042 0.958 14 C 0.031 3.969 15 N -0.912 5.912 16 Si 0.952 3.048 17 H -0.278 1.278 18 H -0.275 1.275 19 H -0.271 1.271 20 C 0.133 3.867 21 C -0.186 4.186 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.101 4.101 25 C -0.105 4.105 26 C -0.160 4.160 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.020 0.980 40 H 0.068 0.932 41 H 0.270 0.730 42 H 0.161 0.839 43 H 0.143 0.857 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.141 0.859 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 4.910 5.981 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.129 4.129 4 C -0.121 4.121 5 H 0.107 0.893 6 C -0.157 4.157 7 C -0.203 4.203 8 C 0.309 3.691 9 O -0.441 6.441 10 N -0.260 5.260 11 C 0.115 3.885 12 C -0.584 4.584 13 H 0.060 0.940 14 C -0.171 4.171 15 N -0.551 5.551 16 Si 0.777 3.223 17 H -0.203 1.203 18 H -0.201 1.201 19 H -0.197 1.197 20 C 0.038 3.962 21 C -0.206 4.206 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.157 4.157 25 C -0.124 4.124 26 C -0.181 4.181 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.047 0.953 38 H 0.094 0.906 39 H 0.038 0.962 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.177 0.823 43 H 0.161 0.839 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.158 0.842 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.794 5.123 6.048 10.440 hybrid contribution 0.659 -0.455 -1.327 1.550 sum -6.136 4.668 4.720 9.040 Atomic orbital electron populations 1.21739 0.94686 1.02201 1.01859 1.21560 0.96713 0.95059 1.02586 1.21414 0.90925 0.98072 1.02462 1.21379 0.98244 0.91160 1.01307 0.89327 1.21711 1.00243 1.01011 0.92696 1.21802 1.02311 0.98923 0.97226 1.21293 0.80722 0.92710 0.74355 1.90284 1.55480 1.46011 1.52323 1.46014 1.09580 1.06365 1.64084 1.19643 0.88348 0.84370 0.96185 1.21491 1.28124 1.16614 0.92189 0.94011 1.25513 0.94591 0.95026 1.01935 1.69984 1.29063 1.20119 1.35888 0.85595 0.78063 0.78182 0.80415 1.20327 1.20089 1.19659 1.18395 0.94264 0.84658 0.98879 1.22456 1.02715 0.92318 1.03084 1.21225 0.95652 0.95902 0.99721 1.20227 0.94028 0.97144 1.01048 1.20728 1.01706 0.90376 1.02919 1.21063 1.00494 0.91038 0.99791 1.21086 0.95043 0.98389 1.03572 0.93270 0.91529 0.92237 0.92440 0.90563 0.90808 0.93222 0.88698 0.92175 0.91204 0.95294 0.90636 0.96233 0.91461 0.92030 0.82280 0.83935 0.90720 0.90465 0.90712 0.84166 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.99 0.71 -2.21 16 2 C -0.12 -2.88 5.57 30.60 0.17 -2.71 16 3 C -0.09 -2.70 3.67 30.59 0.11 -2.59 16 4 C -0.10 -3.55 1.67 -11.54 -0.02 -3.56 16 5 H 0.09 3.49 7.73 -2.39 -0.02 3.47 16 6 C -0.12 -3.74 4.90 30.60 0.15 -3.59 16 7 C -0.15 -4.02 9.14 71.98 0.66 -3.36 16 8 C 0.52 21.93 5.79 87.66 0.51 22.44 16 9 O -0.56 -24.67 12.48 -3.04 -0.04 -24.70 16 10 N -0.54 -24.71 2.69 -635.29 -1.71 -26.41 16 11 C 0.23 11.44 3.87 85.63 0.33 11.77 16 12 C -0.55 -29.07 8.81 25.60 0.23 -28.84 16 13 H 0.04 2.36 7.81 -2.91 -0.02 2.33 16 14 C 0.03 1.61 5.46 84.65 0.46 2.07 16 15 N -0.91 -49.24 13.29 21.45 0.28 -48.95 16 16 Si 0.95 42.21 29.54 68.60 2.03 44.23 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 C 0.13 5.93 6.47 38.15 0.25 6.17 16 21 C -0.19 -7.54 8.98 22.39 0.20 -7.34 16 22 C -0.11 -3.53 9.69 22.25 0.22 -3.31 16 23 C -0.12 -3.77 5.88 -19.84 -0.12 -3.88 16 24 C -0.10 -2.11 10.01 71.23 0.71 -1.39 16 25 C -0.11 -3.63 9.69 22.25 0.22 -3.41 16 26 C -0.16 -6.80 9.04 22.39 0.20 -6.59 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.61 6.95 -2.39 -0.02 1.60 16 32 H 0.07 2.13 6.16 -2.39 -0.01 2.11 16 33 H 0.05 1.61 8.03 -2.39 -0.02 1.59 16 34 H 0.09 2.53 6.95 -2.39 -0.02 2.52 16 35 H 0.06 2.19 5.34 -2.39 -0.01 2.18 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.03 0.92 7.22 -2.39 -0.02 0.91 16 38 H 0.07 1.80 6.56 -2.39 -0.02 1.78 16 39 H 0.02 1.03 6.84 -2.39 -0.02 1.01 16 40 H 0.07 3.23 4.05 -2.39 -0.01 3.22 16 41 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 42 H 0.16 6.79 4.71 -46.29 -0.22 6.57 16 43 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 46 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 47 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 48 H 0.11 5.33 6.16 -2.91 -0.02 5.32 16 Total: -1.00 -60.68 371.81 6.29 -54.40 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.73 Total: 31.77 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 4.99 Total: -30.33 kcal Atomic # 7 Polarization: -73.94 SS G_CDS: -1.42 Total: -75.37 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.04 Total: -24.70 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -60.68 6.29 -54.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584080730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.520 kcal (2) G-P(sol) polarization free energy of solvation -60.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds