Wall clock time and date at job start Tue Mar 31 2020 09:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 C 1.53004 * 109.46918 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47177 * 304.99941 * 4 3 2 6 6 C 1.53003 * 109.47162 * 64.99850 * 4 3 2 7 7 C 1.52998 * 109.46703 * 185.38795 * 6 4 3 8 8 C 1.50701 * 109.47351 * 184.99823 * 4 3 2 9 9 O 1.21291 * 119.99956 * 274.91391 * 8 4 3 10 10 N 1.34774 * 119.99935 * 94.90163 * 8 4 3 11 11 C 1.46495 * 120.00089 * 355.04911 * 10 8 4 12 12 C 1.50699 * 109.47209 * 94.84745 * 11 10 8 13 13 H 1.07994 * 120.00075 * 4.97917 * 12 11 10 14 14 C 1.37881 * 120.00073 * 184.98342 * 12 11 10 15 15 N 1.31516 * 119.99658 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00059 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47262 * 59.99866 * 16 14 12 18 18 H 1.48501 * 109.46932 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46805 * 299.99947 * 16 14 12 20 20 C 1.39929 * 119.99821 * 175.04227 * 10 8 4 21 21 C 1.38875 * 120.06824 * 6.64495 * 20 10 8 22 22 C 1.38117 * 119.92337 * 179.71951 * 21 20 10 23 23 C 1.38275 * 120.07144 * 0.57135 * 22 21 20 24 24 C 1.50699 * 119.93050 * 179.70019 * 23 22 21 25 25 C 1.38286 * 120.14614 * 359.68023 * 23 22 21 26 26 C 1.38109 * 120.06612 * 0.04546 * 25 23 22 27 27 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47285 * 300.00394 * 1 2 3 29 29 H 1.09004 * 109.46742 * 60.00738 * 1 2 3 30 30 H 1.08994 * 109.47285 * 239.99606 * 2 1 3 31 31 H 1.09004 * 109.46742 * 119.99262 * 2 1 3 32 32 H 1.08994 * 109.47416 * 59.99687 * 3 2 1 33 33 H 1.08997 * 109.47363 * 299.99465 * 3 2 1 34 34 H 1.08997 * 109.47078 * 65.38926 * 6 4 3 35 35 H 1.08997 * 109.46960 * 305.38592 * 6 4 3 36 36 H 1.08996 * 109.47520 * 54.97982 * 7 6 4 37 37 H 1.08998 * 109.47751 * 294.97153 * 7 6 4 38 38 H 1.09008 * 109.46623 * 174.97635 * 7 6 4 39 39 H 1.09009 * 109.47121 * 214.84562 * 11 10 8 40 40 H 1.08995 * 109.47108 * 334.84440 * 11 10 8 41 41 H 0.96996 * 119.99510 * 180.02562 * 15 14 12 42 42 H 1.07997 * 120.03823 * 359.97438 * 21 20 10 43 43 H 1.08005 * 119.96340 * 180.25404 * 22 21 20 44 44 H 1.09004 * 109.47441 * 269.98208 * 24 23 22 45 45 H 1.09000 * 109.47174 * 29.97822 * 24 23 22 46 46 H 1.09001 * 109.47653 * 149.97844 * 24 23 22 47 47 H 1.07996 * 119.97045 * 180.02562 * 25 23 22 48 48 H 1.07997 * 120.03946 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 5.6045 0.7090 -1.2503 8 6 4.0724 2.8579 0.1244 9 8 4.1901 3.5484 -0.8658 10 7 4.3905 3.3565 1.3354 11 6 4.1464 2.5621 2.5419 12 6 5.4015 1.8160 2.9146 13 1 6.3139 1.9840 2.3618 14 6 5.3850 0.9187 3.9614 15 7 4.2739 0.7145 4.6349 16 14 6.9409 -0.0057 4.4239 17 1 8.0000 0.9648 4.8000 18 1 6.6604 -0.9031 5.5733 19 1 7.3991 -0.8141 3.2655 20 6 4.9542 4.6329 1.4404 21 6 5.0596 5.4416 0.3163 22 6 5.6112 6.7032 0.4244 23 6 6.0691 7.1567 1.6478 24 6 6.6765 8.5312 1.7608 25 6 5.9704 6.3519 2.7680 26 6 5.4146 5.0916 2.6677 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.7985 1.4741 -2.1412 35 1 3.6406 -0.1553 -1.4426 36 1 5.8907 0.1417 -0.3647 37 1 6.0483 1.7034 -1.2039 38 1 5.9602 0.1936 -2.1426 39 1 3.8599 3.2229 3.3602 40 1 3.3433 1.8502 2.3517 41 1 4.2624 0.0835 5.3715 42 1 4.7069 5.0860 -0.6405 43 1 5.6897 7.3342 -0.4486 44 1 7.7508 8.4691 1.5870 45 1 6.2259 9.1898 1.0183 46 1 6.4923 8.9291 2.7587 47 1 6.3285 6.7092 3.7222 48 1 5.3381 4.4633 3.5428 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584080731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:43 Heat of formation + Delta-G solvation = -30.946944 kcal Electronic energy + Delta-G solvation = -25930.012750 eV Core-core repulsion = 22563.121783 eV Total energy + Delta-G solvation = -3366.890967 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = -3.21 seconds Orbital eigenvalues (eV) -40.36627 -38.28442 -35.96216 -35.38773 -32.92911 -32.62890 -31.33239 -30.28637 -28.90241 -27.56321 -26.08957 -24.13764 -23.36774 -22.43786 -21.77551 -21.10352 -20.10229 -18.46792 -16.96243 -16.76003 -16.20993 -14.97339 -14.92338 -14.81704 -14.57076 -14.39600 -13.80024 -13.68260 -13.38379 -13.22133 -12.96593 -12.93130 -12.71678 -12.60859 -12.24578 -11.88844 -11.76582 -11.69365 -11.57560 -11.37478 -11.28342 -11.04833 -11.02455 -10.79721 -10.76275 -10.49853 -10.40872 -10.28443 -10.20432 -10.06672 -9.96605 -9.06862 -8.69433 -8.47229 -8.29847 -7.06628 -6.26772 -4.35519 1.87900 2.05866 3.19812 3.23453 3.24944 3.30962 3.71471 4.26073 4.48801 4.92795 5.05150 5.10325 5.22490 5.33851 5.34762 5.39796 5.44717 5.61030 5.63997 5.66630 5.77231 5.82661 5.83412 5.99996 6.01709 6.02767 6.05840 6.15217 6.18641 6.20970 6.24832 6.32249 6.34606 6.39581 6.50444 6.54812 6.60941 6.65727 6.75672 6.82042 6.97993 7.03800 7.09788 7.21631 7.36063 7.65891 7.88326 7.90447 8.17110 8.69661 8.84924 9.32471 10.79053 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.006249 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.642545 B = 4479.678615 C = 6258.026756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.110 4.110 5 H 0.116 0.884 6 C -0.104 4.104 7 C -0.154 4.154 8 C 0.527 3.473 9 O -0.546 6.546 10 N -0.534 5.534 11 C 0.227 3.773 12 C -0.539 4.539 13 H 0.062 0.938 14 C 0.070 3.930 15 N -0.888 5.888 16 Si 0.896 3.104 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.165 3.835 21 C -0.179 4.179 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.103 4.103 25 C -0.105 4.105 26 C -0.141 4.141 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.267 0.733 42 H 0.179 0.821 43 H 0.112 0.888 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.115 0.885 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 3.490 -6.756 7.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.142 4.142 4 C -0.131 4.131 5 H 0.134 0.866 6 C -0.142 4.142 7 C -0.211 4.211 8 C 0.318 3.682 9 O -0.427 6.427 10 N -0.252 5.252 11 C 0.108 3.892 12 C -0.577 4.577 13 H 0.080 0.920 14 C -0.134 4.134 15 N -0.526 5.526 16 Si 0.723 3.277 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.069 3.931 21 C -0.198 4.198 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.160 4.160 25 C -0.123 4.123 26 C -0.161 4.161 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.196 0.804 43 H 0.130 0.870 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.133 0.867 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.259 3.631 -7.078 8.269 hybrid contribution 0.975 -0.580 0.713 1.340 sum -1.283 3.052 -6.365 7.174 Atomic orbital electron populations 1.21759 0.96164 1.01235 1.01629 1.21564 0.95453 0.96560 1.02518 1.21480 0.92914 0.97509 1.02304 1.21495 0.96570 0.93522 1.01541 0.86605 1.21426 0.96072 1.00391 0.96306 1.21789 0.95903 1.02038 1.01374 1.20758 0.76380 0.89180 0.81880 1.90207 1.54770 1.59576 1.38101 1.46073 1.55660 1.14126 1.09371 1.19707 0.98124 0.90657 0.80667 1.21339 0.96161 1.23846 1.16382 0.91951 1.24897 0.96471 0.96345 0.95705 1.69905 1.26284 1.35400 1.20968 0.86579 0.83205 0.79763 0.78176 1.20008 1.21054 1.19985 1.18107 0.95490 0.85159 0.94344 1.22780 1.02055 0.93688 1.01313 1.20889 0.99484 0.96023 0.96311 1.19765 1.02917 0.96723 0.94011 1.20655 1.00035 0.93600 1.01730 1.20724 1.00109 0.93849 0.97667 1.21121 1.00857 0.96603 0.97533 0.93001 0.92680 0.93101 0.91845 0.91232 0.91553 0.91838 0.91344 0.91363 0.92196 0.92738 0.93238 0.94250 0.92845 0.92302 0.80449 0.86957 0.92122 0.92350 0.92277 0.86652 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 37.16 0.37 -1.39 16 2 C -0.12 -1.65 5.70 -26.73 -0.15 -1.80 16 3 C -0.10 -1.61 4.48 -26.73 -0.12 -1.73 16 4 C -0.11 -1.94 1.36 -91.77 -0.12 -2.07 16 5 H 0.12 2.29 6.19 -51.93 -0.32 1.97 16 6 C -0.10 -1.62 5.04 -26.73 -0.13 -1.75 16 7 C -0.15 -2.48 9.65 37.16 0.36 -2.13 16 8 C 0.53 10.70 5.75 -10.99 -0.06 10.64 16 9 O -0.55 -11.53 12.37 5.55 0.07 -11.46 16 10 N -0.53 -11.53 2.69 -114.74 -0.31 -11.84 16 11 C 0.23 5.26 4.10 -5.20 -0.02 5.24 16 12 C -0.54 -13.51 8.47 -34.44 -0.29 -13.80 16 13 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 14 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 15 N -0.89 -23.39 13.29 55.43 0.74 -22.65 16 16 Si 0.90 20.11 29.54 -169.99 -5.02 15.08 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 C 0.17 3.50 6.47 -83.69 -0.54 2.96 16 21 C -0.18 -3.56 9.05 -39.39 -0.36 -3.92 16 22 C -0.11 -1.87 9.69 -39.61 -0.38 -2.25 16 23 C -0.13 -2.17 5.88 -104.59 -0.62 -2.78 16 24 C -0.10 -1.28 10.01 36.01 0.36 -0.92 16 25 C -0.10 -1.83 9.69 -39.61 -0.38 -2.21 16 26 C -0.14 -2.85 9.04 -39.39 -0.36 -3.20 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.77 6.45 -51.93 -0.34 0.44 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.09 7.62 -51.93 -0.40 0.70 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.08 7.66 -51.93 -0.40 0.68 16 35 H 0.07 0.91 6.33 -51.93 -0.33 0.59 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.99 7.41 -51.93 -0.38 0.60 16 38 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.04 0.96 6.81 -51.92 -0.35 0.61 16 40 H 0.05 1.25 5.74 -51.93 -0.30 0.95 16 41 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 42 H 0.18 3.69 4.53 -56.24 -0.25 3.44 16 43 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 47 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 48 H 0.14 2.97 6.16 -52.49 -0.32 2.64 16 LS Contribution 377.40 15.07 5.69 5.69 Total: -1.00 -26.74 377.40 -9.40 -36.14 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -8.01 Total: 8.49 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -2.55 Total: -19.44 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.43 Total: -34.49 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -26.74 -9.40 -36.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584080731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.190 kcal (2) G-P(sol) polarization free energy of solvation -26.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.20 seconds