Wall clock time and date at job start Tue Mar 31 2020 09:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 C 1.53004 * 109.46918 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47177 * 304.99941 * 4 3 2 6 6 C 1.53003 * 109.47162 * 64.99850 * 4 3 2 7 7 C 1.52998 * 109.46703 * 185.38795 * 6 4 3 8 8 C 1.50701 * 109.47351 * 184.99823 * 4 3 2 9 9 O 1.21291 * 119.99956 * 274.91391 * 8 4 3 10 10 N 1.34774 * 119.99935 * 94.90163 * 8 4 3 11 11 C 1.46495 * 120.00089 * 355.04911 * 10 8 4 12 12 C 1.50699 * 109.47209 * 94.84745 * 11 10 8 13 13 H 1.07994 * 120.00075 * 4.97917 * 12 11 10 14 14 C 1.37881 * 120.00073 * 184.98342 * 12 11 10 15 15 N 1.31516 * 119.99658 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00059 * 180.02562 * 14 12 11 17 17 H 1.48490 * 109.47262 * 59.99866 * 16 14 12 18 18 H 1.48501 * 109.46932 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46805 * 299.99947 * 16 14 12 20 20 C 1.39929 * 119.99821 * 175.04227 * 10 8 4 21 21 C 1.38875 * 120.06824 * 6.64495 * 20 10 8 22 22 C 1.38117 * 119.92337 * 179.71951 * 21 20 10 23 23 C 1.38275 * 120.07144 * 0.57135 * 22 21 20 24 24 C 1.50699 * 119.93050 * 179.70019 * 23 22 21 25 25 C 1.38286 * 120.14614 * 359.68023 * 23 22 21 26 26 C 1.38109 * 120.06612 * 0.04546 * 25 23 22 27 27 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47285 * 300.00394 * 1 2 3 29 29 H 1.09004 * 109.46742 * 60.00738 * 1 2 3 30 30 H 1.08994 * 109.47285 * 239.99606 * 2 1 3 31 31 H 1.09004 * 109.46742 * 119.99262 * 2 1 3 32 32 H 1.08994 * 109.47416 * 59.99687 * 3 2 1 33 33 H 1.08997 * 109.47363 * 299.99465 * 3 2 1 34 34 H 1.08997 * 109.47078 * 65.38926 * 6 4 3 35 35 H 1.08997 * 109.46960 * 305.38592 * 6 4 3 36 36 H 1.08996 * 109.47520 * 54.97982 * 7 6 4 37 37 H 1.08998 * 109.47751 * 294.97153 * 7 6 4 38 38 H 1.09008 * 109.46623 * 174.97635 * 7 6 4 39 39 H 1.09009 * 109.47121 * 214.84562 * 11 10 8 40 40 H 1.08995 * 109.47108 * 334.84440 * 11 10 8 41 41 H 0.96996 * 119.99510 * 180.02562 * 15 14 12 42 42 H 1.07997 * 120.03823 * 359.97438 * 21 20 10 43 43 H 1.08005 * 119.96340 * 180.25404 * 22 21 20 44 44 H 1.09004 * 109.47441 * 269.98208 * 24 23 22 45 45 H 1.09000 * 109.47174 * 29.97822 * 24 23 22 46 46 H 1.09001 * 109.47653 * 149.97844 * 24 23 22 47 47 H 1.07996 * 119.97045 * 180.02562 * 25 23 22 48 48 H 1.07997 * 120.03946 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 5.6045 0.7090 -1.2503 8 6 4.0724 2.8579 0.1244 9 8 4.1901 3.5484 -0.8658 10 7 4.3905 3.3565 1.3354 11 6 4.1464 2.5621 2.5419 12 6 5.4015 1.8160 2.9146 13 1 6.3139 1.9840 2.3618 14 6 5.3850 0.9187 3.9614 15 7 4.2739 0.7145 4.6349 16 14 6.9409 -0.0057 4.4239 17 1 8.0000 0.9648 4.8000 18 1 6.6604 -0.9031 5.5733 19 1 7.3991 -0.8141 3.2655 20 6 4.9542 4.6329 1.4404 21 6 5.0596 5.4416 0.3163 22 6 5.6112 6.7032 0.4244 23 6 6.0691 7.1567 1.6478 24 6 6.6765 8.5312 1.7608 25 6 5.9704 6.3519 2.7680 26 6 5.4146 5.0916 2.6677 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.7985 1.4741 -2.1412 35 1 3.6406 -0.1553 -1.4426 36 1 5.8907 0.1417 -0.3647 37 1 6.0483 1.7034 -1.2039 38 1 5.9602 0.1936 -2.1426 39 1 3.8599 3.2229 3.3602 40 1 3.3433 1.8502 2.3517 41 1 4.2624 0.0835 5.3715 42 1 4.7069 5.0860 -0.6405 43 1 5.6897 7.3342 -0.4486 44 1 7.7508 8.4691 1.5870 45 1 6.2259 9.1898 1.0183 46 1 6.4923 8.9291 2.7587 47 1 6.3285 6.7092 3.7222 48 1 5.3381 4.4633 3.5428 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584080731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:35 Heat of formation + Delta-G solvation = -41.524726 kcal Electronic energy + Delta-G solvation = -25930.471437 eV Core-core repulsion = 22563.121783 eV Total energy + Delta-G solvation = -3367.349654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 7.58 seconds Orbital eigenvalues (eV) -41.94484 -39.72451 -37.28552 -37.06704 -34.73410 -33.92436 -32.72965 -31.76596 -30.15123 -29.40498 -27.39326 -25.52965 -25.07347 -23.78392 -23.30097 -22.35589 -21.48099 -20.00555 -18.77180 -18.44925 -17.88672 -16.55305 -16.36256 -16.27113 -16.07551 -15.82299 -15.20374 -15.02856 -14.79409 -14.45959 -14.42532 -14.32183 -14.14752 -14.01125 -13.70375 -13.35660 -13.23906 -12.96009 -12.95227 -12.81168 -12.67415 -12.63001 -12.48256 -12.26067 -12.16351 -11.95981 -11.89873 -11.77509 -11.64792 -11.54708 -11.28240 -10.73857 -10.66354 -10.06186 -9.77989 -8.65832 -8.22556 -6.40038 0.40252 0.57308 1.38798 1.39851 1.47285 1.69672 2.11574 2.37969 2.99553 3.04911 3.48595 3.78262 3.95534 4.06703 4.11688 4.22324 4.25658 4.30152 4.35874 4.47974 4.50245 4.55247 4.61869 4.66142 4.76209 4.81031 4.89278 4.91204 4.91929 4.94734 4.98411 5.04524 5.07017 5.13947 5.19819 5.25680 5.26512 5.30447 5.36434 5.41491 5.49794 5.52292 5.57229 5.63711 5.77112 5.85411 5.94446 6.33814 6.46403 6.73082 7.19240 7.31798 8.80167 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.006249 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.642545 B = 4479.678615 C = 6258.026756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.106 4.106 5 H 0.090 0.910 6 C -0.098 4.098 7 C -0.150 4.150 8 C 0.520 3.480 9 O -0.557 6.557 10 N -0.542 5.542 11 C 0.247 3.753 12 C -0.542 4.542 13 H 0.046 0.954 14 C 0.032 3.968 15 N -0.912 5.912 16 Si 0.950 3.050 17 H -0.276 1.276 18 H -0.277 1.277 19 H -0.270 1.270 20 C 0.131 3.869 21 C -0.193 4.193 22 C -0.107 4.107 23 C -0.124 4.124 24 C -0.101 4.101 25 C -0.105 4.105 26 C -0.160 4.160 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.019 0.981 40 H 0.047 0.953 41 H 0.270 0.730 42 H 0.168 0.832 43 H 0.143 0.857 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.141 0.859 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 4.113 -7.779 8.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.136 4.136 4 C -0.127 4.127 5 H 0.108 0.892 6 C -0.136 4.136 7 C -0.208 4.208 8 C 0.312 3.688 9 O -0.438 6.438 10 N -0.261 5.261 11 C 0.128 3.872 12 C -0.580 4.580 13 H 0.064 0.936 14 C -0.170 4.170 15 N -0.551 5.551 16 Si 0.775 3.225 17 H -0.201 1.201 18 H -0.202 1.202 19 H -0.195 1.195 20 C 0.036 3.964 21 C -0.212 4.212 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.157 4.157 25 C -0.124 4.124 26 C -0.181 4.181 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.185 0.815 43 H 0.160 0.840 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.159 0.841 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.649 4.268 -8.107 9.309 hybrid contribution 0.817 -0.644 1.022 1.458 sum -0.832 3.624 -7.085 8.002 Atomic orbital electron populations 1.21742 0.94624 1.02348 1.01814 1.21535 0.96775 0.94717 1.02582 1.21462 0.91254 0.99140 1.01774 1.21515 0.97995 0.91388 1.01837 0.89164 1.21444 0.95619 1.01674 0.94834 1.21759 0.96385 1.00500 1.02119 1.21271 0.75991 0.90170 0.81345 1.90194 1.55355 1.60194 1.38103 1.46050 1.56321 1.14532 1.09196 1.19294 0.97171 0.89917 0.80867 1.21367 0.96083 1.24175 1.16380 0.93571 1.25522 0.98959 0.96956 0.95534 1.69984 1.27765 1.35968 1.21368 0.85723 0.79970 0.78663 0.78111 1.20114 1.20204 1.19526 1.18429 0.97133 0.85448 0.95402 1.22762 1.03190 0.94941 1.00350 1.21250 0.98194 0.95118 0.97983 1.20239 1.01062 0.98295 0.92866 1.20731 1.00612 0.90986 1.03416 1.21057 0.99095 0.92738 0.99486 1.21084 1.02572 0.97927 0.96482 0.91422 0.93563 0.91894 0.89995 0.92869 0.93468 0.90899 0.91110 0.88525 0.93539 0.95450 0.90366 0.96314 0.93523 0.92071 0.81536 0.83971 0.90676 0.90510 0.90733 0.84142 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.54 16 2 C -0.12 -3.08 5.70 30.59 0.17 -2.91 16 3 C -0.10 -3.08 4.48 30.59 0.14 -2.94 16 4 C -0.11 -3.85 1.36 -11.54 -0.02 -3.87 16 5 H 0.09 3.75 6.19 -2.39 -0.01 3.74 16 6 C -0.10 -2.99 5.04 30.59 0.15 -2.83 16 7 C -0.15 -4.85 9.65 71.98 0.69 -4.15 16 8 C 0.52 22.09 5.75 87.66 0.50 22.59 16 9 O -0.56 -24.30 12.37 -3.06 -0.04 -24.33 16 10 N -0.54 -24.84 2.69 -635.30 -1.71 -26.55 16 11 C 0.25 12.20 4.10 85.63 0.35 12.55 16 12 C -0.54 -28.43 8.47 25.60 0.22 -28.22 16 13 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 14 C 0.03 1.65 5.46 84.66 0.46 2.12 16 15 N -0.91 -49.29 13.29 21.45 0.28 -49.01 16 16 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 20 C 0.13 5.82 6.47 38.15 0.25 6.07 16 21 C -0.19 -7.81 9.05 22.39 0.20 -7.61 16 22 C -0.11 -3.54 9.69 22.25 0.22 -3.32 16 23 C -0.12 -3.76 5.88 -19.84 -0.12 -3.88 16 24 C -0.10 -2.10 10.01 71.24 0.71 -1.39 16 25 C -0.11 -3.60 9.69 22.25 0.22 -3.38 16 26 C -0.16 -6.74 9.04 22.39 0.20 -6.53 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.08 1.82 6.45 -2.39 -0.02 1.80 16 31 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.05 1.63 7.62 -2.39 -0.02 1.61 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 2.15 7.66 -2.39 -0.02 2.13 16 35 H 0.10 2.39 6.33 -2.39 -0.02 2.37 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.03 1.00 7.41 -2.39 -0.02 0.98 16 38 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.02 0.99 6.81 -2.38 -0.02 0.98 16 40 H 0.05 2.34 5.74 -2.39 -0.01 2.33 16 41 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.17 7.13 4.53 -62.25 -0.28 6.84 16 43 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 46 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 47 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 48 H 0.12 5.30 6.16 -2.91 -0.02 5.28 16 Total: -1.00 -59.81 377.40 6.29 -53.52 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.66 Total: 32.88 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 5.07 Total: -30.25 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -1.42 Total: -75.56 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.04 Total: -24.33 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -59.81 6.29 -53.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584080731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.992 kcal (2) G-P(sol) polarization free energy of solvation -59.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.58 seconds