Wall clock time and date at job start Tue Mar 31 2020 09:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53000 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47311 * 119.99962 * 2 1 3 5 5 N 1.46901 * 109.47081 * 60.98690 * 4 2 1 6 6 C 1.46894 * 111.00204 * 73.35391 * 5 4 2 7 7 C 1.50710 * 109.46955 * 279.61213 * 6 5 4 8 8 H 1.08002 * 120.00021 * 2.99095 * 7 6 5 9 9 C 1.37879 * 119.99927 * 182.98642 * 7 6 5 10 10 N 1.31513 * 119.99995 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99619 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47176 * 60.00636 * 11 9 7 13 13 H 1.48501 * 109.46745 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47584 * 300.00115 * 11 9 7 15 15 C 1.46903 * 110.99829 * 197.30730 * 5 4 2 16 16 C 1.50701 * 109.47127 * 66.04527 * 15 5 4 17 17 C 1.38291 * 120.00715 * 270.01854 * 16 15 5 18 18 C 1.37967 * 119.95881 * 180.02562 * 17 16 15 19 19 C 1.39147 * 120.21859 * 0.04026 * 18 17 16 20 20 C 1.38376 * 119.68699 * 359.82211 * 19 18 17 21 21 C 1.38094 * 120.00903 * 90.00142 * 16 15 5 22 22 C 1.50772 * 121.40359 * 180.30258 * 20 19 18 23 23 C 1.53062 * 109.69456 * 342.21672 * 22 20 19 24 24 C 1.53400 * 108.29291 * 48.18390 * 23 22 20 25 25 O 1.35841 * 118.50095 * 179.75472 * 19 18 17 26 26 H 1.09003 * 109.47100 * 300.00067 * 1 2 3 27 27 H 1.09004 * 109.47627 * 60.00248 * 1 2 3 28 28 H 1.09000 * 109.47575 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47100 * 239.99933 * 2 1 3 30 30 H 1.09011 * 109.47197 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47240 * 299.99867 * 3 2 1 32 32 H 1.08993 * 109.47249 * 59.99900 * 3 2 1 33 33 H 1.09002 * 109.47398 * 300.98544 * 4 2 1 34 34 H 1.09002 * 109.47169 * 180.98630 * 4 2 1 35 35 H 1.08993 * 109.47490 * 39.61043 * 6 5 4 36 36 H 1.08999 * 109.47583 * 159.61980 * 6 5 4 37 37 H 0.96999 * 119.99714 * 179.97438 * 10 9 7 38 38 H 1.08995 * 109.47085 * 306.04156 * 15 5 4 39 39 H 1.08998 * 109.46893 * 186.04749 * 15 5 4 40 40 H 1.08000 * 120.01741 * 0.06529 * 17 16 15 41 41 H 1.08002 * 119.88735 * 179.97438 * 18 17 16 42 42 H 1.08006 * 119.84718 * 0.02562 * 21 16 15 43 43 H 1.09002 * 109.43683 * 102.26494 * 22 20 19 44 44 H 1.09002 * 109.43447 * 222.13950 * 22 20 19 45 45 H 1.08996 * 109.66644 * 288.50354 * 23 22 20 46 46 H 1.09001 * 109.72874 * 167.90235 * 23 22 20 47 47 H 1.08999 * 109.68193 * 175.58723 * 24 23 22 48 48 H 1.09003 * 109.67897 * 55.07832 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.5699 -2.1129 1.2374 6 6 2.3013 -2.9072 0.2415 7 6 1.7208 -2.6557 -1.1264 8 1 0.9235 -1.9379 -1.2511 9 6 2.2076 -3.3420 -2.2187 10 7 3.1781 -4.2164 -2.0669 11 14 1.4885 -3.0297 -3.9142 12 1 1.6750 -1.6014 -4.2756 13 1 2.1795 -3.8872 -4.9105 14 1 0.0391 -3.3526 -3.9044 15 6 1.6761 -2.7159 2.5728 16 6 0.7239 -2.0238 3.5136 17 6 1.1425 -0.9189 4.2323 18 6 0.2700 -0.2864 5.0938 19 6 -1.0310 -0.7568 5.2432 20 6 -1.4478 -1.8608 4.5205 21 6 -0.5671 -2.4924 3.6580 22 6 -2.8504 -2.3990 4.6474 23 6 -3.4947 -1.8631 5.9282 24 6 -3.2625 -0.3479 5.9865 25 8 -1.8591 -0.1106 6.1046 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6623 -0.2177 2.1392 34 1 3.1298 -0.7059 1.2581 35 1 3.3526 -2.6198 0.2484 36 1 2.2125 -3.9660 0.4846 37 1 3.5203 -4.6994 -2.8353 38 1 2.6959 -2.6050 2.9413 39 1 1.4240 -3.7747 2.5144 40 1 2.1515 -0.5511 4.1188 41 1 0.5982 0.5761 5.6549 42 1 -0.8916 -3.3556 3.0957 43 1 -3.4393 -2.0834 3.7861 44 1 -2.8190 -3.4879 4.6852 45 1 -3.0371 -2.3386 6.7957 46 1 -4.5647 -2.0707 5.9166 47 1 -3.7794 0.0697 6.8504 48 1 -3.6379 0.1163 5.0745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001652053843.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:56 Heat of formation + Delta-G solvation = -26.183815 kcal Electronic energy + Delta-G solvation = -25645.761569 eV Core-core repulsion = 22279.077147 eV Total energy + Delta-G solvation = -3366.684422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.59865 -38.30841 -36.73028 -34.32918 -33.71966 -32.61753 -30.69424 -30.28863 -27.33832 -26.39870 -26.24711 -25.49125 -23.82915 -22.94635 -21.97738 -20.79092 -19.38922 -18.95616 -17.66764 -16.59941 -16.42660 -15.67809 -15.15533 -14.82343 -14.46077 -14.38487 -14.08802 -13.96382 -13.81576 -13.46542 -13.18591 -13.08829 -12.92837 -12.43820 -12.33145 -12.08930 -11.72391 -11.65732 -11.38305 -11.28226 -11.13288 -11.01397 -10.95205 -10.74428 -10.61863 -10.45930 -10.31996 -10.14261 -10.04770 -9.86012 -9.34028 -9.04189 -8.55934 -8.35129 -7.86995 -7.17070 -5.98139 -3.96780 1.50689 1.62962 3.30121 3.35190 3.39497 3.42393 3.89595 4.46124 4.52664 4.59899 4.69124 4.91766 5.07423 5.08129 5.22994 5.29852 5.36426 5.38327 5.47324 5.54356 5.64791 5.68688 5.73736 5.75749 5.86715 5.90681 6.00455 6.02342 6.15573 6.24823 6.27428 6.33416 6.38400 6.46328 6.48774 6.58358 6.62231 6.74009 6.85824 6.95928 6.97081 7.22957 7.27671 7.35265 7.46238 7.54070 7.91119 8.16699 8.28402 8.59502 9.10158 9.65184 11.12279 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.003801 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.224944 B = 7365.315403 C = 7655.760517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.070 3.930 5 N -0.526 5.526 6 C 0.192 3.808 7 C -0.501 4.501 8 H 0.077 0.923 9 C 0.054 3.946 10 N -0.901 5.901 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.277 1.277 15 C 0.094 3.906 16 C -0.087 4.087 17 C -0.083 4.083 18 C -0.150 4.150 19 C 0.118 3.882 20 C -0.161 4.161 21 C -0.063 4.063 22 C -0.077 4.077 23 C -0.159 4.159 24 C 0.062 3.938 25 O -0.321 6.321 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.019 0.981 35 H -0.008 1.008 36 H 0.027 0.973 37 H 0.260 0.740 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 6.774 14.932 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.058 4.058 5 N -0.250 5.250 6 C 0.067 3.933 7 C -0.540 4.540 8 H 0.095 0.905 9 C -0.147 4.147 10 N -0.541 5.541 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.034 4.034 16 C -0.088 4.088 17 C -0.102 4.102 18 C -0.169 4.169 19 C 0.074 3.926 20 C -0.162 4.162 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.196 4.196 24 C -0.014 4.014 25 O -0.235 6.235 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.010 0.990 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.100 0.900 47 H 0.120 0.880 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.208 6.758 14.832 19.232 hybrid contribution 0.431 -0.037 -0.899 0.997 sum -9.777 6.721 13.933 18.300 Atomic orbital electron populations 1.21624 0.95719 1.02505 0.98574 1.21421 0.96032 0.93878 1.01100 1.21835 1.00315 0.97571 1.00410 1.22071 0.95996 0.90090 0.97626 1.62142 1.57965 1.01820 1.03120 1.19809 0.91205 0.92504 0.89776 1.21390 1.19055 1.22549 0.90994 0.90491 1.24998 0.95287 0.95334 0.99104 1.69950 1.27150 1.26324 1.30640 0.86663 0.79290 0.78137 0.83972 1.20238 1.21522 1.20233 1.20996 0.94843 0.98151 0.89441 1.19826 0.95179 0.96419 0.97346 1.20838 0.99178 0.94994 0.95195 1.20456 0.92012 1.02084 1.02309 1.18593 0.90577 0.91744 0.91714 1.19728 0.97250 0.97479 1.01750 1.20776 0.92247 0.99380 0.95790 1.20443 0.92333 1.00971 0.97643 1.22219 1.01896 0.96337 0.99169 1.22899 0.79750 0.95935 1.02773 1.85955 1.17419 1.66023 1.54142 0.94893 0.94822 0.90759 0.87184 0.93502 0.93388 0.93963 0.92468 0.96322 0.99048 0.95523 0.93035 0.95310 0.90528 0.85875 0.85814 0.85690 0.90527 0.90131 0.90624 0.90027 0.87964 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.39 37.15 0.31 -2.03 16 2 C -0.11 -2.03 2.40 -90.63 -0.22 -2.25 16 3 C -0.14 -2.31 9.19 37.16 0.34 -1.97 16 4 C 0.07 1.35 4.25 -3.82 -0.02 1.33 16 5 N -0.53 -10.88 3.70 -237.52 -0.88 -11.75 16 6 C 0.19 4.81 4.78 -4.97 -0.02 4.79 16 7 C -0.50 -13.41 7.23 -34.43 -0.25 -13.66 16 8 H 0.08 2.01 4.57 -52.49 -0.24 1.77 16 9 C 0.05 1.48 5.46 -17.82 -0.10 1.39 16 10 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 11 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.09 1.67 5.08 -4.97 -0.03 1.64 16 16 C -0.09 -1.38 4.94 -104.65 -0.52 -1.89 16 17 C -0.08 -1.21 7.85 -39.66 -0.31 -1.53 16 18 C -0.15 -2.09 9.94 -39.34 -0.39 -2.48 16 19 C 0.12 1.67 6.47 -39.19 -0.25 1.41 16 20 C -0.16 -2.20 5.75 -104.44 -0.60 -2.80 16 21 C -0.06 -0.95 9.32 -39.53 -0.37 -1.32 16 22 C -0.08 -0.81 5.86 -27.82 -0.16 -0.98 16 23 C -0.16 -1.36 6.19 -26.49 -0.16 -1.52 16 24 C 0.06 0.57 7.02 37.36 0.26 0.83 16 25 O -0.32 -4.14 10.27 -19.24 -0.20 -4.34 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 1.53 6.73 -51.93 -0.35 1.18 16 29 H 0.11 2.49 5.14 -51.93 -0.27 2.22 16 30 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.00 5.06 -51.93 -0.26 0.74 16 34 H 0.02 0.37 7.74 -51.93 -0.40 -0.03 16 35 H -0.01 -0.22 7.67 -51.93 -0.40 -0.62 16 36 H 0.03 0.72 7.65 -51.93 -0.40 0.32 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 38 H 0.03 0.50 8.07 -51.93 -0.42 0.08 16 39 H 0.08 1.37 7.74 -51.93 -0.40 0.97 16 40 H 0.12 1.66 7.69 -52.49 -0.40 1.25 16 41 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 370.29 15.07 5.58 5.58 Total: -1.00 -29.31 370.29 -10.43 -39.74 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.17 Total: 1.04 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -2.48 Total: -21.03 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.14 Total: -37.36 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.20 Total: -4.34 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.31 -10.43 -39.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652053843.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.559 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds