Wall clock time and date at job start Tue Mar 31 2020 09:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53000 * 109.47112 * 2 1 4 4 C 1.52999 * 109.47311 * 119.99962 * 2 1 3 5 5 N 1.46901 * 109.47081 * 60.98690 * 4 2 1 6 6 C 1.46894 * 111.00204 * 73.35391 * 5 4 2 7 7 C 1.50710 * 109.46955 * 279.61213 * 6 5 4 8 8 H 1.08002 * 120.00021 * 2.99095 * 7 6 5 9 9 C 1.37879 * 119.99927 * 182.98642 * 7 6 5 10 10 N 1.31513 * 119.99995 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99619 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47176 * 60.00636 * 11 9 7 13 13 H 1.48501 * 109.46745 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47584 * 300.00115 * 11 9 7 15 15 C 1.46903 * 110.99829 * 197.30730 * 5 4 2 16 16 C 1.50701 * 109.47127 * 66.04527 * 15 5 4 17 17 C 1.38291 * 120.00715 * 270.01854 * 16 15 5 18 18 C 1.37967 * 119.95881 * 180.02562 * 17 16 15 19 19 C 1.39147 * 120.21859 * 0.04026 * 18 17 16 20 20 C 1.38376 * 119.68699 * 359.82211 * 19 18 17 21 21 C 1.38094 * 120.00903 * 90.00142 * 16 15 5 22 22 C 1.50772 * 121.40359 * 180.30258 * 20 19 18 23 23 C 1.53062 * 109.69456 * 342.21672 * 22 20 19 24 24 C 1.53400 * 108.29291 * 48.18390 * 23 22 20 25 25 O 1.35841 * 118.50095 * 179.75472 * 19 18 17 26 26 H 1.09003 * 109.47100 * 300.00067 * 1 2 3 27 27 H 1.09004 * 109.47627 * 60.00248 * 1 2 3 28 28 H 1.09000 * 109.47575 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47100 * 239.99933 * 2 1 3 30 30 H 1.09011 * 109.47197 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47240 * 299.99867 * 3 2 1 32 32 H 1.08993 * 109.47249 * 59.99900 * 3 2 1 33 33 H 1.09002 * 109.47398 * 300.98544 * 4 2 1 34 34 H 1.09002 * 109.47169 * 180.98630 * 4 2 1 35 35 H 1.08993 * 109.47490 * 39.61043 * 6 5 4 36 36 H 1.08999 * 109.47583 * 159.61980 * 6 5 4 37 37 H 0.96999 * 119.99714 * 179.97438 * 10 9 7 38 38 H 1.08995 * 109.47085 * 306.04156 * 15 5 4 39 39 H 1.08998 * 109.46893 * 186.04749 * 15 5 4 40 40 H 1.08000 * 120.01741 * 0.06529 * 17 16 15 41 41 H 1.08002 * 119.88735 * 179.97438 * 18 17 16 42 42 H 1.08006 * 119.84718 * 0.02562 * 21 16 15 43 43 H 1.09002 * 109.43683 * 102.26494 * 22 20 19 44 44 H 1.09002 * 109.43447 * 222.13950 * 22 20 19 45 45 H 1.08996 * 109.66644 * 288.50354 * 23 22 20 46 46 H 1.09001 * 109.72874 * 167.90235 * 23 22 20 47 47 H 1.08999 * 109.68193 * 175.58723 * 24 23 22 48 48 H 1.09003 * 109.67897 * 55.07832 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.5699 -2.1129 1.2374 6 6 2.3013 -2.9072 0.2415 7 6 1.7208 -2.6557 -1.1264 8 1 0.9235 -1.9379 -1.2511 9 6 2.2076 -3.3420 -2.2187 10 7 3.1781 -4.2164 -2.0669 11 14 1.4885 -3.0297 -3.9142 12 1 1.6750 -1.6014 -4.2756 13 1 2.1795 -3.8872 -4.9105 14 1 0.0391 -3.3526 -3.9044 15 6 1.6761 -2.7159 2.5728 16 6 0.7239 -2.0238 3.5136 17 6 1.1425 -0.9189 4.2323 18 6 0.2700 -0.2864 5.0938 19 6 -1.0310 -0.7568 5.2432 20 6 -1.4478 -1.8608 4.5205 21 6 -0.5671 -2.4924 3.6580 22 6 -2.8504 -2.3990 4.6474 23 6 -3.4947 -1.8631 5.9282 24 6 -3.2625 -0.3479 5.9865 25 8 -1.8591 -0.1106 6.1046 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6623 -0.2177 2.1392 34 1 3.1298 -0.7059 1.2581 35 1 3.3526 -2.6198 0.2484 36 1 2.2125 -3.9660 0.4846 37 1 3.5203 -4.6994 -2.8353 38 1 2.6959 -2.6050 2.9413 39 1 1.4240 -3.7747 2.5144 40 1 2.1515 -0.5511 4.1188 41 1 0.5982 0.5761 5.6549 42 1 -0.8916 -3.3556 3.0957 43 1 -3.4393 -2.0834 3.7861 44 1 -2.8190 -3.4879 4.6852 45 1 -3.0371 -2.3386 6.7957 46 1 -4.5647 -2.0707 5.9166 47 1 -3.7794 0.0697 6.8504 48 1 -3.6379 0.1163 5.0745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001652053843.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:55 Heat of formation + Delta-G solvation = -40.975177 kcal Electronic energy + Delta-G solvation = -25646.402971 eV Core-core repulsion = 22279.077147 eV Total energy + Delta-G solvation = -3367.325824 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59522 -39.66080 -38.06193 -35.30594 -35.16156 -34.59483 -31.97582 -31.33941 -29.16020 -27.81089 -27.58746 -26.57929 -25.35450 -24.04080 -23.28771 -22.35278 -20.55462 -20.37841 -18.66089 -18.43307 -17.56864 -16.85547 -16.71811 -16.35821 -15.88723 -15.62271 -15.33177 -15.11664 -15.03695 -14.66394 -14.52040 -14.18656 -14.10684 -13.96735 -13.89069 -13.36074 -13.15261 -13.08636 -12.94820 -12.76182 -12.65226 -12.36045 -12.27483 -12.16418 -11.89465 -11.78197 -11.67236 -11.55960 -11.40051 -11.29446 -11.20051 -10.88226 -10.47274 -9.65523 -9.05263 -8.84411 -8.10997 -6.16418 0.40807 0.48513 1.42944 1.44949 1.52174 2.40107 2.45015 2.77122 3.19858 3.51225 3.70850 3.79692 3.87052 4.00610 4.02589 4.18341 4.21124 4.32007 4.36481 4.47026 4.49901 4.55333 4.66083 4.68005 4.72808 4.78100 4.81057 4.84173 4.93329 4.96702 5.05592 5.09549 5.13276 5.14831 5.18403 5.21314 5.24581 5.31030 5.35454 5.44749 5.53045 5.67007 5.77687 5.81788 5.86909 5.88150 6.17650 6.49585 6.55855 6.69303 6.98038 7.49834 8.99169 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.003801 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.224944 B = 7365.315403 C = 7655.760517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.074 3.926 5 N -0.527 5.527 6 C 0.208 3.792 7 C -0.503 4.503 8 H 0.083 0.917 9 C -0.001 4.001 10 N -0.940 5.940 11 Si 0.955 3.045 12 H -0.267 1.267 13 H -0.289 1.289 14 H -0.269 1.269 15 C 0.096 3.904 16 C -0.102 4.102 17 C -0.087 4.087 18 C -0.153 4.153 19 C 0.115 3.885 20 C -0.163 4.163 21 C -0.074 4.074 22 C -0.081 4.081 23 C -0.152 4.152 24 C 0.052 3.948 25 O -0.331 6.331 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.006 0.994 35 H -0.039 1.039 36 H -0.001 1.001 37 H 0.260 0.740 38 H 0.029 0.971 39 H 0.067 0.933 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.072 0.928 46 H 0.110 0.890 47 H 0.131 0.869 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.183 8.752 15.903 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.127 4.127 3 C -0.194 4.194 4 C -0.054 4.054 5 N -0.250 5.250 6 C 0.082 3.918 7 C -0.541 4.541 8 H 0.101 0.899 9 C -0.198 4.198 10 N -0.581 5.581 11 Si 0.781 3.219 12 H -0.192 1.192 13 H -0.214 1.214 14 H -0.194 1.194 15 C -0.032 4.032 16 C -0.103 4.103 17 C -0.105 4.105 18 C -0.171 4.171 19 C 0.070 3.930 20 C -0.164 4.164 21 C -0.093 4.093 22 C -0.118 4.118 23 C -0.189 4.189 24 C -0.023 4.023 25 O -0.246 6.246 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.024 0.976 35 H -0.021 1.021 36 H 0.018 0.982 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.150 0.850 41 H 0.159 0.841 42 H 0.139 0.861 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.128 0.872 47 H 0.149 0.851 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.530 8.753 15.822 21.999 hybrid contribution 1.088 -0.632 -1.072 1.653 sum -11.442 8.120 14.749 20.357 Atomic orbital electron populations 1.21502 0.94953 1.01157 0.99841 1.21358 0.96651 0.95564 0.99119 1.21754 1.00357 0.95391 1.01908 1.22105 0.95273 0.89209 0.98820 1.62088 1.56851 1.02286 1.03812 1.19464 0.89871 0.91521 0.90974 1.21719 1.18706 1.22024 0.91693 0.89867 1.25834 0.95692 0.95203 1.03052 1.70090 1.28772 1.27632 1.31635 0.85638 0.78676 0.78316 0.79276 1.19237 1.21444 1.19436 1.20963 0.95733 0.97914 0.88548 1.19620 0.95194 0.97472 0.97983 1.20897 0.99778 0.94585 0.95257 1.20673 0.92010 1.02428 1.02032 1.18769 0.90985 0.91717 0.91541 1.20011 0.98494 0.97126 1.00757 1.20842 0.92338 0.99651 0.96466 1.20552 0.90694 1.01432 0.99099 1.22211 1.03425 0.95626 0.97678 1.23254 0.77949 0.96670 1.04379 1.85948 1.19126 1.65881 1.53646 0.93412 0.93660 0.93365 0.90985 0.93467 0.92308 0.92006 0.90237 0.97594 1.02136 0.98239 0.93140 0.95242 0.91489 0.85047 0.84094 0.86087 0.90021 0.89498 0.90956 0.87167 0.85115 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 8.39 71.98 0.60 -3.57 16 2 C -0.11 -4.09 2.40 -10.80 -0.03 -4.11 16 3 C -0.14 -4.12 9.19 71.98 0.66 -3.46 16 4 C 0.07 2.83 4.25 86.30 0.37 3.20 16 5 N -0.53 -22.47 3.70 -905.37 -3.35 -25.82 16 6 C 0.21 10.97 4.78 85.56 0.41 11.38 16 7 C -0.50 -27.71 7.23 25.60 0.19 -27.53 16 8 H 0.08 4.41 4.57 -2.91 -0.01 4.40 16 9 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 10 N -0.94 -56.81 13.29 21.45 0.28 -56.52 16 11 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 15 C 0.10 3.55 5.08 85.56 0.43 3.99 16 16 C -0.10 -3.23 4.94 -19.89 -0.10 -3.33 16 17 C -0.09 -2.43 7.85 22.22 0.17 -2.26 16 18 C -0.15 -3.99 9.94 22.42 0.22 -3.76 16 19 C 0.11 3.02 6.47 22.52 0.15 3.16 16 20 C -0.16 -4.22 5.75 -19.74 -0.11 -4.34 16 21 C -0.07 -2.21 9.32 22.30 0.21 -2.01 16 22 C -0.08 -1.54 5.86 29.89 0.18 -1.36 16 23 C -0.15 -2.13 6.19 30.75 0.19 -1.94 16 24 C 0.05 0.79 7.02 72.12 0.51 1.30 16 25 O -0.33 -7.68 10.27 -91.76 -0.94 -8.63 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.05 1.96 6.73 -2.39 -0.02 1.94 16 29 H 0.07 3.30 5.14 -2.39 -0.01 3.29 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 2.70 5.06 -2.39 -0.01 2.69 16 34 H 0.01 0.24 7.74 -2.39 -0.02 0.22 16 35 H -0.04 -2.26 7.67 -2.39 -0.02 -2.28 16 36 H 0.00 -0.03 7.65 -2.39 -0.02 -0.05 16 37 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.03 1.07 8.07 -2.39 -0.02 1.05 16 39 H 0.07 2.55 7.74 -2.39 -0.02 2.53 16 40 H 0.13 3.39 7.69 -2.91 -0.02 3.36 16 41 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -64.66 370.29 3.45 -61.21 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.92 Total: 17.58 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 4.51 Total: -34.23 kcal Atomic # 7 Polarization: -79.27 SS G_CDS: -3.06 Total: -82.34 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.94 Total: -8.63 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.66 3.45 -61.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001652053843.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.234 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds