Wall clock time and date at job start Tue Mar 31 2020 09:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86796 * 120.00152 * 2 1 4 4 H 1.48505 * 109.47226 * 239.99688 * 3 2 1 5 5 H 1.48496 * 109.47159 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47241 * 119.99905 * 3 2 1 7 7 C 1.38956 * 119.99853 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99779 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00181 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99878 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47124 * 180.02562 * 12 10 9 14 14 C 1.39969 * 120.00063 * 179.97438 * 13 12 10 15 15 C 1.38726 * 120.08726 * 0.02562 * 14 13 12 16 16 C 1.38225 * 119.97943 * 179.97438 * 15 14 13 17 17 C 1.38254 * 120.15880 * 359.97438 * 16 15 14 18 18 C 1.38285 * 120.18247 * 359.97438 * 17 16 15 19 19 C 1.38507 * 120.01794 * 0.02562 * 18 17 16 20 20 O 1.36012 * 120.08094 * 179.97438 * 19 18 17 21 21 C 1.42899 * 116.99936 * 359.97438 * 20 19 18 22 22 F 1.39897 * 109.46779 * 60.00173 * 21 20 19 23 23 F 1.39899 * 109.46828 * 180.02562 * 21 20 19 24 24 F 1.39899 * 109.47350 * 300.00189 * 21 20 19 25 25 H 0.96995 * 119.99654 * 0.02562 * 1 2 3 26 26 H 0.96998 * 120.00234 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47313 * 60.00323 * 12 10 9 28 28 H 1.08998 * 109.47307 * 300.00700 * 12 10 9 29 29 H 0.96996 * 120.00304 * 0.02562 * 13 12 10 30 30 H 1.07999 * 120.01577 * 359.95781 * 15 14 13 31 31 H 1.07996 * 119.92322 * 179.97438 * 16 15 14 32 32 H 1.07997 * 119.90959 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.99401 * 179.74859 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0011 13 7 2.1957 -5.9765 0.0016 14 6 1.7291 -7.2961 0.0028 15 6 0.3656 -7.5517 0.0029 16 6 -0.0927 -8.8557 0.0035 17 6 0.8048 -9.9074 0.0034 18 6 2.1654 -9.6602 0.0022 19 6 2.6328 -8.3564 0.0016 20 8 3.9708 -8.1119 0.0010 21 6 4.8379 -9.2477 0.0015 22 9 4.5962 -10.0193 -1.1401 23 9 6.1692 -8.8180 0.0013 24 9 4.5970 -10.0178 1.1444 25 1 -0.4849 0.8400 -0.0004 26 1 0.3534 -2.3906 0.0005 27 1 0.6168 -4.9209 -0.8886 28 1 0.6173 -4.9204 0.8913 29 1 3.1494 -5.7993 0.0019 30 1 -0.3376 -6.7320 0.0028 31 1 -1.1543 -9.0536 0.0040 32 1 0.4423 -10.9247 0.0034 33 1 2.8638 -10.4840 0.0063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020048316.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:36 Heat of formation + Delta-G solvation = -201.847403 kcal Electronic energy + Delta-G solvation = -24298.029928 eV Core-core repulsion = 19908.946226 eV Total energy + Delta-G solvation = -4389.083702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 304.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.50128 -48.21554 -48.09978 -40.35808 -38.53225 -37.63448 -35.19332 -33.99660 -31.43381 -30.39652 -29.83904 -26.77121 -26.04053 -24.50471 -22.72026 -21.89090 -19.91622 -19.33564 -19.21431 -19.04417 -18.11235 -17.47592 -16.25847 -16.13317 -15.48801 -15.35421 -14.90727 -14.86387 -14.67593 -14.53839 -14.46788 -14.41488 -14.40490 -14.23140 -14.19055 -13.68963 -13.39038 -13.12501 -12.71504 -12.27408 -11.92820 -11.75295 -11.62106 -11.22429 -11.13475 -10.52454 -10.33315 -10.11584 -9.64832 -8.80189 -8.66139 -8.13378 -7.26156 -6.54681 -3.96425 1.19791 1.48942 1.49198 2.77492 3.12172 3.20005 3.23377 3.48190 3.64851 3.71037 3.74684 3.97312 4.10063 4.67633 4.79278 4.81029 4.98942 5.13105 5.33771 5.35950 5.56414 5.65467 5.81780 5.95379 6.05075 6.18250 6.40880 6.49205 6.75660 7.36270 7.43446 7.87958 7.97984 8.42487 9.02185 9.35471 9.84092 10.62232 Molecular weight = 304.08amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.003215 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.472467 B = 8706.148441 C = 9829.829123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.550 5.550 10 C 0.428 3.572 11 O -0.592 6.592 12 C 0.112 3.888 13 N -0.718 5.718 14 C 0.235 3.765 15 C -0.178 4.178 16 C -0.081 4.081 17 C -0.155 4.155 18 C -0.139 4.139 19 C 0.015 3.985 20 O -0.308 6.308 21 C 0.605 3.395 22 F -0.169 7.169 23 F -0.134 7.134 24 F -0.169 7.169 25 H 0.275 0.725 26 H 0.395 0.605 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.417 0.583 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -19.363 0.008 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.435 4.435 8 H 0.122 0.878 9 N -0.185 5.185 10 C 0.213 3.787 11 O -0.478 6.478 12 C -0.017 4.017 13 N -0.348 5.348 14 C 0.128 3.872 15 C -0.201 4.201 16 C -0.099 4.099 17 C -0.175 4.175 18 C -0.158 4.158 19 C -0.031 4.031 20 O -0.228 6.228 21 C 0.514 3.486 22 F -0.151 7.151 23 F -0.115 7.115 24 F -0.151 7.151 25 H 0.085 0.915 26 H 0.229 0.771 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.256 0.744 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.790 -18.827 0.007 18.843 hybrid contribution 0.347 0.632 0.000 0.721 sum 1.138 -18.195 0.008 18.231 Atomic orbital electron populations 1.69595 1.06000 1.28641 1.49410 1.25305 0.95667 0.99897 0.96729 0.85874 0.78800 0.80112 0.79218 1.19758 1.20824 1.19751 1.19687 0.93468 0.82018 1.48310 0.87760 1.41775 1.09361 1.04445 1.62893 1.19697 0.88363 0.84901 0.85711 1.90525 1.13753 1.86682 1.56842 1.20999 0.92084 0.86441 1.02128 1.44541 1.10290 1.00547 1.79456 1.17168 0.91240 0.83114 0.95670 1.20624 0.92102 0.98060 1.09322 1.20935 0.99703 0.91753 0.97546 1.20619 0.91694 0.99284 1.05916 1.21210 0.97956 0.93538 1.03078 1.18055 0.78535 0.93878 1.12659 1.86382 1.16510 1.29908 1.90040 1.19318 0.78079 0.76625 0.74573 1.93280 1.94122 1.75958 1.51717 1.93301 1.31759 1.90170 1.96307 1.93279 1.94138 1.76046 1.51629 0.91542 0.77128 0.90362 0.90370 0.74354 0.84550 0.85515 0.85731 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.48 13.05 55.50 0.72 -22.76 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.45 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.31 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.33 5.29 -10.96 -0.06 -13.39 16 10 C 0.43 9.71 7.85 -10.98 -0.09 9.62 16 11 O -0.59 -15.57 15.24 5.55 0.08 -15.49 16 12 C 0.11 1.89 5.40 -5.19 -0.03 1.86 16 13 N -0.72 -12.17 5.70 -59.67 -0.34 -12.52 16 14 C 0.24 3.49 6.67 -83.56 -0.56 2.93 16 15 C -0.18 -2.19 9.31 -39.41 -0.37 -2.56 16 16 C -0.08 -0.84 10.04 -39.58 -0.40 -1.23 16 17 C -0.15 -1.62 10.04 -39.56 -0.40 -2.02 16 18 C -0.14 -1.67 8.26 -39.47 -0.33 -2.00 16 19 C 0.01 0.21 6.50 -39.08 -0.25 -0.04 16 20 O -0.31 -4.54 9.62 -19.78 -0.19 -4.73 16 21 C 0.61 7.45 3.42 101.05 0.35 7.80 16 22 F -0.17 -1.95 15.57 2.25 0.04 -1.92 16 23 F -0.13 -1.65 17.53 2.25 0.04 -1.61 16 24 F -0.17 -1.96 15.56 2.25 0.04 -1.92 16 25 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 26 H 0.40 9.01 7.90 -40.82 -0.32 8.69 16 27 H 0.08 1.17 7.95 -51.93 -0.41 0.75 16 28 H 0.08 1.17 7.95 -51.93 -0.41 0.75 16 29 H 0.42 7.92 6.80 -40.82 -0.28 7.64 16 30 H 0.14 1.49 6.74 -52.49 -0.35 1.14 16 31 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.38 5.10 -52.49 -0.27 1.12 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -29.39 305.13 -4.81 -34.20 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -2.40 Total: 13.54 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -2.31 Total: 6.56 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.33 Total: -48.66 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.11 Total: -20.22 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.11 Total: -5.45 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.39 -4.81 -34.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020048316.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.647 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds