Wall clock time and date at job start Tue Mar 31 2020 07:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86806 * 120.00150 * 2 1 4 4 H 1.48505 * 109.47020 * 269.99808 * 3 2 1 5 5 H 1.48504 * 109.46840 * 29.99657 * 3 2 1 6 6 H 1.48499 * 109.47394 * 149.99773 * 3 2 1 7 7 C 1.37879 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99971 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00077 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46865 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47047 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47214 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54116 * 68.38080 * 12 11 10 14 14 O 1.42102 * 110.54369 * 291.62718 * 12 11 10 15 15 N 1.65595 * 104.44949 * 180.02562 * 12 11 10 16 16 C 1.46503 * 120.00082 * 65.00181 * 15 12 11 17 17 C 1.53002 * 109.47495 * 164.99971 * 16 15 12 18 18 C 1.50693 * 109.47298 * 180.02562 * 17 16 15 19 19 N 1.29027 * 124.91534 * 90.30653 * 18 17 16 20 20 C 1.31784 * 117.12400 * 180.22644 * 19 18 17 21 21 C 1.33641 * 114.49781 * 359.48088 * 20 19 18 22 22 S 1.70983 * 124.91700 * 269.99604 * 18 17 16 23 23 H 0.97001 * 120.00194 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46901 * 60.00341 * 9 7 2 25 25 H 1.08995 * 109.47005 * 299.99987 * 9 7 2 26 26 H 1.09001 * 109.47028 * 60.00485 * 10 9 7 27 27 H 1.08998 * 109.47657 * 300.00257 * 10 9 7 28 28 H 1.09008 * 109.46611 * 60.00201 * 11 10 9 29 29 H 1.08998 * 109.47406 * 300.00783 * 11 10 9 30 30 H 0.97001 * 120.00366 * 245.00570 * 15 12 11 31 31 H 1.08999 * 109.47402 * 45.00185 * 16 15 12 32 32 H 1.08998 * 109.47073 * 284.99924 * 16 15 12 33 33 H 1.09003 * 109.47062 * 59.99580 * 17 16 15 34 34 H 1.09006 * 109.46638 * 300.00219 * 17 16 15 35 35 H 1.08002 * 122.75368 * 179.75456 * 20 19 18 36 36 H 1.08001 * 126.03830 * 180.26907 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6365 0.0022 12 16 6.1562 -4.3468 0.0028 13 8 5.8601 -4.9807 -1.2339 14 8 5.8601 -4.9800 1.2401 15 7 7.8058 -4.2018 0.0035 16 6 8.4881 -3.6033 1.1535 17 6 9.9833 -3.9198 1.0809 18 6 10.6850 -3.3047 2.2641 19 7 10.8733 -3.8912 3.3978 20 6 11.5035 -3.2067 4.3311 21 6 11.8767 -1.9781 3.9605 22 16 11.3535 -1.7313 2.2962 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.8751 -0.6804 -0.8888 26 1 3.6586 -3.1509 -0.8875 27 1 3.6578 -3.1499 0.8924 28 1 5.9148 -2.1220 0.8919 29 1 5.9149 -2.1233 -0.8881 30 1 8.3203 -4.5131 -0.7576 31 1 8.0745 -4.0130 2.0750 32 1 8.3443 -2.5230 1.1394 33 1 10.3970 -3.5102 0.1593 34 1 10.1270 -5.0002 1.0949 35 1 11.7060 -3.6073 5.3134 36 1 12.4055 -1.2628 4.5729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068906665.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:37 Heat of formation + Delta-G solvation = -71.473144 kcal Electronic energy + Delta-G solvation = -19718.988225 eV Core-core repulsion = 16455.611538 eV Total energy + Delta-G solvation = -3263.376687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 304.070 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62124 -38.21927 -37.18466 -36.96782 -36.49372 -34.24275 -32.93437 -30.14853 -29.66722 -25.96711 -25.39015 -23.67957 -22.25383 -20.93050 -20.41200 -19.09798 -18.95239 -18.34189 -17.60588 -17.23007 -16.55040 -16.34564 -16.19128 -15.86261 -15.63442 -15.12951 -14.86558 -14.55806 -14.22801 -14.05326 -13.64878 -13.32033 -13.23434 -13.18045 -13.10606 -12.78322 -12.68005 -12.55105 -12.53881 -12.39462 -11.83629 -11.63111 -11.40600 -11.29507 -10.77004 -10.59981 -10.47692 -10.29833 -9.82138 -8.29380 -6.35505 -0.75545 -0.23954 0.44481 0.81375 1.37429 1.40388 1.51903 1.73763 1.91014 2.37135 2.77088 3.05906 3.17528 3.29058 3.68479 3.83192 3.93976 4.02220 4.16571 4.35614 4.42034 4.46809 4.57677 4.60231 4.65631 4.86823 4.88094 4.97113 5.04866 5.23961 5.35512 5.47319 5.63373 6.12627 6.25903 6.73118 6.80493 7.29248 8.87775 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.003275 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.656465 B = 8547.598912 C = 9894.392883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.001 4.001 3 Si 0.956 3.044 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.237 1.237 7 C -0.545 4.545 8 H 0.028 0.972 9 C -0.005 4.005 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.625 3.375 13 O -0.991 6.991 14 O -0.996 6.996 15 N -1.105 6.105 16 C 0.113 3.887 17 C -0.048 4.048 18 C 0.030 3.970 19 N -0.505 5.505 20 C 0.016 3.984 21 C -0.255 4.255 22 S 0.155 5.845 23 H 0.267 0.733 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.154 0.846 29 H 0.161 0.839 30 H 0.430 0.570 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.190 0.810 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.195 -1.411 3.725 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.160 1.160 7 C -0.583 4.583 8 H 0.047 0.953 9 C -0.044 4.044 10 C -0.145 4.145 11 C -0.741 4.741 12 S 2.721 3.279 13 O -0.981 6.981 14 O -0.986 6.986 15 N -0.868 5.868 16 C -0.015 4.015 17 C -0.090 4.090 18 C -0.248 4.248 19 N -0.221 5.221 20 C -0.134 4.134 21 C -0.394 4.394 22 S 0.409 5.591 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.172 0.828 29 H 0.179 0.821 30 H 0.267 0.733 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.207 0.793 36 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 30.380 -1.831 3.243 30.607 hybrid contribution -0.035 0.578 0.782 0.973 sum 30.345 -1.253 4.025 30.636 Atomic orbital electron populations 1.70087 1.08605 1.28332 1.52403 1.26142 0.95703 1.04000 0.93873 0.85576 0.79710 0.77436 0.79429 1.18846 1.21235 1.15987 1.21582 0.92493 0.93249 1.50988 0.95319 1.19508 0.93566 0.93485 0.97797 1.21189 0.90681 1.00459 1.02150 1.30503 1.05343 1.24040 1.14175 1.04301 0.73348 0.77554 0.72714 1.93547 1.83730 1.74588 1.46284 1.93544 1.84010 1.73876 1.47147 1.55194 1.24904 1.78403 1.28266 1.21427 0.92565 0.99271 0.88211 1.20462 0.92186 1.02940 0.93425 1.27106 1.03557 0.96332 0.97760 1.66291 1.16845 1.37698 1.01219 1.22164 0.98964 0.91772 1.00520 1.27521 1.09998 1.02521 0.99361 1.83979 1.49884 1.14982 1.10290 0.92442 0.94928 0.94872 0.91812 0.92052 0.82824 0.82067 0.73281 0.91261 0.88898 0.85704 0.88074 0.79282 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 2 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 3 Si 0.96 42.77 27.47 68.60 1.88 44.65 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.24 -9.42 6.54 99.48 0.65 -8.76 16 7 C -0.55 -31.53 9.66 25.60 0.25 -31.28 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C -0.01 -0.22 4.04 29.85 0.12 -0.10 16 10 C -0.11 -3.95 5.16 30.60 0.16 -3.80 16 11 C -0.61 -14.99 6.07 71.98 0.44 -14.56 16 12 S 2.63 67.62 5.46 -56.49 -0.31 67.31 16 13 O -0.99 -31.93 18.08 -127.65 -2.31 -34.23 16 14 O -1.00 -33.65 17.49 -127.65 -2.23 -35.88 16 15 N -1.11 -17.48 5.89 -187.48 -1.10 -18.58 16 16 C 0.11 1.62 6.11 86.38 0.53 2.15 16 17 C -0.05 -0.55 5.94 29.85 0.18 -0.37 16 18 C 0.03 0.46 6.64 88.52 0.59 1.05 16 19 N -0.50 -9.79 10.54 -191.45 -2.02 -11.81 16 20 C 0.02 0.24 11.35 83.66 0.95 1.19 16 21 C -0.25 -2.78 11.37 66.78 0.76 -2.02 16 22 S 0.16 1.71 23.18 -56.49 -1.31 0.40 16 23 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 24 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 25 H 0.03 1.37 7.57 -2.39 -0.02 1.35 16 26 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.15 2.98 8.14 -2.39 -0.02 2.96 16 29 H 0.16 3.00 8.14 -2.39 -0.02 2.98 16 30 H 0.43 4.63 8.62 -96.74 -0.83 3.79 16 31 H 0.07 1.32 7.69 -2.39 -0.02 1.30 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.20 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -83.37 335.12 -2.47 -85.84 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.20 Total: 9.61 kcal Atomic # 6 Polarization: -51.74 SS G_CDS: 4.43 Total: -47.31 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -2.82 Total: -90.38 kcal Atomic # 8 Polarization: -65.58 SS G_CDS: -4.54 Total: -70.12 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Atomic # 16 Polarization: 69.33 SS G_CDS: -1.62 Total: 67.71 kcal Total: -83.37 -2.47 -85.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068906665.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.363 kcal (2) G-P(sol) polarization free energy of solvation -83.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds