Wall clock time and date at job start Tue Mar 31 2020 09:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00100 * 2 1 4 4 H 1.48508 * 109.47304 * 239.99800 * 3 2 1 5 5 H 1.48500 * 109.47251 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47418 * 119.99990 * 3 2 1 7 7 C 1.37871 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99660 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.46505 * 120.00278 * 96.59557 * 10 9 7 12 12 C 1.50702 * 109.46904 * 265.03091 * 11 10 9 13 13 C 1.38224 * 119.62004 * 94.97718 * 12 11 10 14 14 C 1.38631 * 119.16056 * 179.78729 * 13 12 11 15 15 C 1.38675 * 118.41458 * 0.47287 * 14 13 12 16 16 C 1.38176 * 119.16828 * 359.50177 * 15 14 13 17 17 N 1.31853 * 119.61436 * 274.99246 * 12 11 10 18 18 C 1.34783 * 120.00153 * 276.59802 * 10 9 7 19 19 O 1.21616 * 119.99829 * 185.81943 * 18 10 9 20 20 C 1.47168 * 119.99781 * 5.81573 * 18 10 9 21 21 C 1.38246 * 128.47255 * 175.68801 * 20 18 10 22 22 N 1.31243 * 111.88339 * 180.02562 * 21 20 18 23 23 N 1.27337 * 120.04458 * 359.97438 * 22 21 20 24 24 S 1.56634 * 109.73524 * 359.70121 * 23 22 21 25 25 H 0.97007 * 119.99714 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47333 * 59.99943 * 9 7 2 27 27 H 1.09002 * 109.47609 * 300.00040 * 9 7 2 28 28 H 1.08999 * 109.47195 * 145.02111 * 11 10 9 29 29 H 1.09003 * 109.46445 * 25.02458 * 11 10 9 30 30 H 1.08001 * 120.41810 * 359.97438 * 13 12 11 31 31 H 1.07997 * 120.78923 * 180.22923 * 14 13 12 32 32 H 1.08002 * 120.41520 * 179.78318 * 15 14 13 33 33 H 1.08001 * 119.62218 * 180.24915 * 16 15 14 34 34 H 1.07991 * 124.05828 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6126 0.0005 11 6 2.5682 -4.2642 1.2609 12 6 3.8369 -3.6503 1.7944 13 6 3.7637 -2.6287 2.7227 14 6 4.9367 -2.0739 3.2105 15 6 6.1448 -2.5629 2.7367 16 6 6.1396 -3.5866 1.8087 17 7 5.0038 -4.0937 1.3701 18 6 2.7428 -4.0378 -1.1590 19 8 3.4496 -5.0273 -1.1739 20 6 2.4769 -3.3045 -2.4069 21 6 2.9986 -3.5329 -3.6666 22 7 2.5373 -2.6784 -4.5495 23 7 1.7089 -1.7790 -4.1939 24 16 1.4029 -1.9169 -2.6640 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5570 -0.8896 27 1 0.6239 -2.5567 0.8903 28 1 2.7245 -5.3289 1.0875 29 1 1.7658 -4.1281 1.9860 30 1 2.8047 -2.2694 3.0659 31 1 4.9103 -1.2771 3.9390 32 1 7.0782 -2.1518 3.0921 33 1 7.0763 -3.9758 1.4378 34 1 3.7014 -4.3200 -3.8965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171547200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:15 Heat of formation + Delta-G solvation = 66.301063 kcal Electronic energy + Delta-G solvation = -22615.708762 eV Core-core repulsion = 19255.155213 eV Total energy + Delta-G solvation = -3360.553549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53893 -41.18047 -40.20222 -36.96699 -34.84919 -33.44934 -33.09812 -32.29847 -29.57914 -28.84023 -27.09597 -25.12103 -24.26476 -23.84909 -22.52325 -20.54822 -19.81293 -18.79992 -17.96758 -17.75482 -17.22037 -16.94295 -16.66958 -16.44212 -16.32808 -15.77650 -15.41516 -14.80648 -14.44871 -14.32457 -14.10323 -13.91120 -13.79189 -13.47034 -13.14477 -12.83903 -12.72309 -12.54003 -12.49560 -12.16599 -11.82560 -11.11703 -10.96341 -10.77358 -10.68411 -10.51833 -10.33099 -10.30060 -9.87405 -9.55497 -8.29013 -6.34837 -1.01102 0.20652 0.23799 0.50022 0.90526 1.14960 1.37344 1.44563 1.46578 1.99898 2.23785 2.35357 3.03312 3.06710 3.29260 3.48910 3.65749 3.95247 4.00079 4.08984 4.29798 4.34573 4.52756 4.62911 4.70903 4.76887 4.85298 4.95700 5.06146 5.31216 5.37147 5.56603 5.69671 5.87901 5.90372 6.34075 6.67897 6.91954 7.12682 7.21794 7.28737 8.74110 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.007941 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.698280 B = 3525.251795 C = 4925.814315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.058 3.942 3 Si 0.917 3.083 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.048 0.952 9 C 0.236 3.764 10 N -0.587 5.587 11 C 0.171 3.829 12 C 0.095 3.905 13 C -0.145 4.145 14 C -0.087 4.087 15 C -0.169 4.169 16 C 0.072 3.928 17 N -0.496 5.496 18 C 0.600 3.400 19 O -0.552 6.552 20 C -0.335 4.335 21 C 0.055 3.945 22 N -0.297 5.297 23 N -0.377 5.377 24 S 0.593 5.407 25 H 0.276 0.724 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.144 0.856 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.473 -2.712 7.416 9.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.148 4.148 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.067 0.933 9 C 0.112 3.888 10 N -0.317 5.317 11 C 0.048 3.952 12 C -0.043 4.043 13 C -0.166 4.166 14 C -0.113 4.113 15 C -0.189 4.189 16 C -0.085 4.085 17 N -0.206 5.206 18 C 0.387 3.613 19 O -0.432 6.432 20 C -0.475 4.475 21 C -0.116 4.116 22 N -0.157 5.157 23 N -0.357 5.357 24 S 0.735 5.265 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.139 0.861 30 H 0.162 0.838 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.185 0.815 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.596 -2.290 5.887 7.269 hybrid contribution 1.364 0.643 0.741 1.680 sum 4.960 -1.647 6.629 8.441 Atomic orbital electron populations 1.69894 1.06248 1.28833 1.46783 1.25191 0.95240 1.00474 0.93937 0.86218 0.79386 0.81187 0.78921 1.21244 1.19960 1.18921 1.21409 0.93130 0.90902 1.51491 0.93341 1.19611 0.87689 0.82971 0.98496 1.47963 1.43837 1.34763 1.05172 1.20365 0.93028 0.96860 0.84917 1.21634 0.93755 0.94919 0.94003 1.22158 1.00780 0.96020 0.97603 1.21933 0.92035 0.98657 0.98667 1.22445 1.00136 0.97833 0.98454 1.23137 0.96412 0.94391 0.94581 1.67519 0.99001 1.29630 1.24468 1.16616 0.79663 0.82949 0.82101 1.90744 1.39496 1.26554 1.86379 1.28023 1.11706 1.07461 1.00310 1.24538 1.00816 0.99686 0.86558 1.70804 1.10045 1.02375 1.32449 1.78079 1.17432 1.21650 1.18500 1.84544 1.28604 1.14646 0.98690 0.91413 0.95244 0.91792 0.89567 0.86065 0.83800 0.82485 0.81974 0.81549 0.76139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -39.68 13.29 21.45 0.28 -39.39 16 2 C 0.06 2.55 5.10 84.65 0.43 2.98 16 3 Si 0.92 36.93 29.54 68.60 2.03 38.95 16 4 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.53 -22.77 6.97 25.60 0.18 -22.60 16 8 H 0.05 2.29 7.81 -2.91 -0.02 2.27 16 9 C 0.24 9.35 4.79 85.63 0.41 9.76 16 10 N -0.59 -22.38 2.47 -834.69 -2.06 -24.45 16 11 C 0.17 5.63 5.76 85.63 0.49 6.12 16 12 C 0.10 3.21 6.32 42.55 0.27 3.48 16 13 C -0.15 -4.26 9.72 22.36 0.22 -4.05 16 14 C -0.09 -2.16 10.18 22.47 0.23 -1.93 16 15 C -0.17 -3.98 10.11 22.36 0.23 -3.76 16 16 C 0.07 2.06 11.18 84.67 0.95 3.01 16 17 N -0.50 -17.68 10.27 -183.89 -1.89 -19.57 16 18 C 0.60 24.91 7.56 86.59 0.65 25.57 16 19 O -0.55 -24.60 16.61 -4.08 -0.07 -24.67 16 20 C -0.33 -13.57 6.44 24.62 0.16 -13.41 16 21 C 0.05 2.09 11.55 84.78 0.98 3.07 16 22 N -0.30 -12.19 11.54 -57.87 -0.67 -12.86 16 23 N -0.38 -16.02 12.51 37.02 0.46 -15.56 16 24 S 0.59 24.23 17.09 -56.49 -0.97 23.26 16 25 H 0.28 12.02 8.31 -92.70 -0.77 11.25 16 26 H 0.03 1.25 4.78 -18.60 -0.09 1.16 16 27 H 0.06 2.48 7.78 -2.39 -0.02 2.47 16 28 H 0.09 2.91 7.50 -2.39 -0.02 2.89 16 29 H 0.12 3.20 7.68 -2.39 -0.02 3.18 16 30 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 31 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 32 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.17 3.87 8.06 -2.91 -0.02 3.84 16 34 H 0.22 7.09 8.06 -2.92 -0.02 7.06 16 Total: -1.00 -57.16 314.47 3.38 -53.78 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.07 Total: 12.27 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.19 Total: 8.24 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -3.87 Total: -111.83 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.07 Total: -24.67 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.95 kcal Atomic # 16 Polarization: 24.23 SS G_CDS: -0.97 Total: 23.26 kcal Total: -57.16 3.38 -53.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171547200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.079 kcal (2) G-P(sol) polarization free energy of solvation -57.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds