Wall clock time and date at job start Tue Mar 31 2020 09:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48491 * 109.47115 * 269.99586 * 3 2 1 5 5 H 1.48509 * 109.46780 * 29.99770 * 3 2 1 6 6 H 1.48497 * 109.46888 * 149.99527 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21503 * 120.00321 * 359.72059 * 12 11 10 14 14 C 1.48277 * 119.99570 * 179.72350 * 12 11 10 15 15 C 1.40267 * 119.23729 * 179.72917 * 14 12 11 16 16 C 1.36519 * 119.81477 * 179.69952 * 15 14 12 17 17 C 1.40734 * 118.24932 * 0.57872 * 16 15 14 18 18 C 1.40441 * 121.25302 * 179.66440 * 17 16 15 19 19 C 1.36091 * 119.66488 * 180.02562 * 18 17 16 20 20 C 1.39565 * 120.89984 * 0.02562 * 19 18 17 21 21 Cl 1.73600 * 119.47058 * 180.02562 * 20 19 18 22 22 C 1.36113 * 121.05561 * 359.93307 * 20 19 18 23 23 C 1.40786 * 119.73109 * 0.09317 * 22 20 19 24 24 N 1.31889 * 119.24114 * 359.97438 * 14 12 11 25 25 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 27 27 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 28 28 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 29 29 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 30 30 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 31 31 H 1.08005 * 120.08571 * 359.97438 * 15 14 12 32 32 H 1.07998 * 120.86958 * 180.28939 * 16 15 14 33 33 H 1.08000 * 120.16376 * 359.97438 * 18 17 16 34 34 H 1.08001 * 119.55437 * 179.97438 * 19 18 17 35 35 H 1.08004 * 120.13502 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4021 -6.0979 0.0059 14 6 1.4456 -7.3820 0.0111 15 6 2.1631 -8.5873 0.0110 16 6 1.4925 -9.7764 0.0223 17 6 0.0855 -9.7477 0.0213 18 6 -0.6676 -10.9331 0.0254 19 6 -2.0269 -10.8676 0.0237 20 6 -2.6851 -9.6370 0.0173 21 17 -4.4207 -9.5967 0.0160 22 6 -1.9881 -8.4679 0.0139 23 6 -0.5805 -8.4942 0.0150 24 7 0.1269 -7.3646 0.0110 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8904 28 1 2.8722 -3.6042 0.8906 29 1 2.8722 -3.6042 -0.8894 30 1 0.5430 -4.9308 0.0000 31 1 3.2431 -8.5746 0.0066 32 1 2.0277 -10.7144 0.0272 33 1 -0.1703 -11.8919 0.0292 34 1 -2.6042 -11.7804 0.0265 35 1 -2.5127 -7.5238 0.0094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342625648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:51 Heat of formation + Delta-G solvation = 0.720287 kcal Electronic energy + Delta-G solvation = -20604.283460 eV Core-core repulsion = 17206.549658 eV Total energy + Delta-G solvation = -3397.733802 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.29746 -39.28951 -37.64761 -36.37163 -34.99898 -33.89805 -32.82693 -31.11211 -30.41112 -29.47123 -25.86292 -24.48763 -23.82628 -22.63550 -21.25567 -20.59244 -18.58592 -18.02423 -17.55894 -16.40654 -15.78602 -15.57768 -15.37680 -14.83127 -14.78384 -14.53033 -14.48989 -14.02873 -13.77080 -13.34738 -13.16552 -12.80384 -12.45694 -12.28964 -12.07449 -11.49236 -11.36484 -11.21123 -11.03158 -10.78893 -10.64531 -10.34008 -10.32209 -9.82840 -9.48684 -9.23129 -9.08678 -8.70057 -8.55739 -8.35963 -6.07625 -4.10828 -0.16690 0.22724 1.53535 1.67352 2.13255 3.12589 3.30592 3.33164 3.37272 3.42153 3.84022 3.88496 4.12907 4.38001 4.42464 4.43875 4.61004 4.69685 4.80969 5.06784 5.29266 5.31731 5.43215 5.47404 5.62001 5.71603 5.88581 5.99843 6.25225 6.31921 6.32910 6.70692 6.83033 7.36682 7.53996 7.62879 7.89726 7.96758 8.26901 8.50175 8.94982 9.53874 11.03910 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.002854 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.818403 B = 9807.693147 C =11416.051599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.118 3.882 11 N -0.695 5.695 12 C 0.556 3.444 13 O -0.539 6.539 14 C 0.133 3.867 15 C -0.121 4.121 16 C -0.061 4.061 17 C -0.092 4.092 18 C -0.083 4.083 19 C -0.107 4.107 20 C -0.021 4.021 21 Cl -0.060 7.060 22 C -0.073 4.073 23 C 0.135 3.865 24 N -0.440 5.440 25 H 0.262 0.738 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.409 0.591 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.967 -25.799 0.054 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.003 4.003 11 N -0.344 5.344 12 C 0.338 3.662 13 O -0.417 6.417 14 C -0.021 4.021 15 C -0.141 4.141 16 C -0.087 4.087 17 C -0.095 4.095 18 C -0.102 4.102 19 C -0.125 4.125 20 C -0.050 4.050 21 Cl -0.032 7.032 22 C -0.092 4.092 23 C 0.011 3.989 24 N -0.151 5.151 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.245 0.755 31 H 0.172 0.828 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.929 -24.830 0.054 25.315 hybrid contribution 0.121 0.159 -0.006 0.200 sum -4.807 -24.671 0.047 25.135 Atomic orbital electron populations 1.69958 1.06082 1.26880 1.50240 1.24998 0.94887 0.99398 0.94993 0.86512 0.79826 0.83026 0.78184 1.20566 1.21174 1.19732 1.21036 0.93230 0.90326 1.51492 0.92203 1.19337 0.94188 0.90942 0.98091 1.21862 0.96207 0.81163 1.01106 1.46267 1.11550 1.05946 1.70602 1.17902 0.86784 0.83176 0.78289 1.90767 1.12717 1.87046 1.51135 1.21673 0.89355 0.94976 0.96123 1.21851 1.02844 0.91412 0.98005 1.21460 0.92326 0.99075 0.95863 1.19027 0.94701 0.94383 1.01340 1.20943 0.93191 0.97448 0.98601 1.20835 0.94687 0.96672 1.00314 1.20564 0.85361 0.94701 1.04358 1.98399 1.09082 1.98891 1.96779 1.20779 0.91514 0.98512 0.98387 1.18584 0.93285 0.87978 0.99062 1.67873 1.07281 1.29752 1.10231 0.92825 0.95783 0.95769 0.92115 0.92116 0.75528 0.82794 0.83387 0.84032 0.84310 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.54 5.61 -4.04 -0.02 2.52 16 11 N -0.69 -12.94 5.54 -61.11 -0.34 -13.27 16 12 C 0.56 9.88 7.81 -12.13 -0.09 9.78 16 13 O -0.54 -10.80 16.28 5.36 0.09 -10.72 16 14 C 0.13 1.94 6.75 -82.95 -0.56 1.38 16 15 C -0.12 -1.39 9.54 -39.44 -0.38 -1.76 16 16 C -0.06 -0.54 9.88 -39.26 -0.39 -0.93 16 17 C -0.09 -0.90 5.75 -106.71 -0.61 -1.52 16 18 C -0.08 -0.58 9.77 -39.52 -0.39 -0.97 16 19 C -0.11 -0.77 9.73 -39.86 -0.39 -1.16 16 20 C -0.02 -0.19 6.27 -39.85 -0.25 -0.44 16 21 Cl -0.06 -0.52 28.91 -51.86 -1.50 -2.02 16 22 C -0.07 -0.78 9.73 -39.38 -0.38 -1.17 16 23 C 0.13 1.64 6.61 -84.86 -0.56 1.08 16 24 N -0.44 -6.29 9.47 -7.54 -0.07 -6.36 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.33 8.14 -51.92 -0.42 0.90 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.41 7.18 7.78 -40.82 -0.32 6.86 16 31 H 0.15 1.64 7.60 -52.48 -0.40 1.24 16 32 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -31.68 327.67 -9.38 -41.07 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.64 Total: 1.79 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -4.57 Total: -6.30 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.33 Total: -45.18 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.68 -9.38 -41.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342625648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.788 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds