Wall clock time and date at job start Tue Mar 31 2020 08:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47258 * 324.59059 * 3 2 1 5 5 C 1.46501 * 119.99957 * 274.99955 * 4 3 2 6 6 C 1.47202 * 109.47084 * 275.00040 * 5 4 3 7 7 N 5.22906 * 147.56335 * 268.26405 * 2 1 3 8 8 S 1.65601 * 119.99718 * 95.00024 * 4 3 2 9 9 O 1.42109 * 106.39857 * 156.46243 * 8 4 3 10 10 O 1.42100 * 106.40575 * 23.54069 * 8 4 3 11 11 C 1.76200 * 107.21684 * 269.99829 * 8 4 3 12 12 C 1.38634 * 119.75186 * 270.29707 * 11 8 4 13 13 C 1.37613 * 120.24846 * 180.30382 * 12 11 8 14 14 C 1.40718 * 119.74556 * 359.42742 * 13 12 11 15 15 C 1.41391 * 120.24500 * 180.29972 * 14 13 12 16 16 H 1.08002 * 120.00244 * 24.37367 * 15 14 13 17 17 C 1.39949 * 120.00129 * 204.37426 * 15 14 13 18 18 N 1.30826 * 119.99793 * 17.85075 * 17 15 14 19 19 Si 1.86793 * 120.00334 * 197.85319 * 17 15 14 20 20 H 1.48509 * 109.47143 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47452 * 119.99621 * 19 17 15 22 22 H 1.48495 * 109.47595 * 239.99938 * 19 17 15 23 23 C 1.40709 * 119.51000 * 0.27602 * 14 13 12 24 24 C 1.37623 * 119.74844 * 0.02562 * 23 14 13 25 25 H 4.40639 * 5.51369 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.46917 * 204.58704 * 3 2 1 27 27 H 1.09007 * 109.47146 * 84.59125 * 3 2 1 28 28 H 1.09003 * 109.46539 * 35.00062 * 5 4 3 29 29 H 1.08997 * 109.46698 * 154.99961 * 5 4 3 30 30 H 1.07999 * 119.87525 * 0.02562 * 12 11 8 31 31 H 1.07998 * 120.13001 * 179.70224 * 13 12 11 32 32 H 0.97001 * 120.00110 * 179.97438 * 18 17 15 33 33 H 1.08004 * 120.13035 * 180.02562 * 23 14 13 34 34 H 1.07996 * 119.87669 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1249 0.8003 5 6 3.2748 -0.9854 2.2519 6 6 4.5800 -0.3801 2.5632 7 7 5.5873 0.0850 2.8034 8 16 3.5294 -2.5547 0.0640 9 8 4.4459 -3.2118 0.9287 10 8 3.8266 -2.2405 -1.2896 11 6 2.0732 -3.5463 0.0364 12 6 1.7997 -4.3967 1.0966 13 6 0.6685 -5.1803 1.0828 14 6 -0.2182 -5.1071 -0.0073 15 6 -1.3868 -5.9028 -0.0295 16 1 -1.8174 -6.2558 0.8960 17 6 -1.9856 -6.2329 -1.2505 18 7 -1.3072 -6.1198 -2.3634 19 14 -3.7534 -6.8350 -1.2915 20 1 -4.2954 -6.8731 0.0906 21 1 -4.5717 -5.9119 -2.1182 22 1 -3.7987 -8.1979 -1.8792 23 6 0.0663 -4.2359 -1.0750 24 6 1.2067 -3.4661 -1.0429 25 1 -1.0498 -0.0004 0.0000 26 1 3.0089 0.9353 0.4276 27 1 3.0094 -0.0961 -1.0232 28 1 2.4779 -0.3472 2.6340 29 1 3.2092 -1.9679 2.7193 30 1 2.4793 -4.4476 1.9345 31 1 0.4598 -5.8456 1.9076 32 1 -1.7220 -6.3490 -3.2098 33 1 -0.6076 -4.1715 -1.9165 34 1 1.4269 -2.7964 -1.8610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394015378.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:18 Heat of formation + Delta-G solvation = 30.421282 kcal Electronic energy + Delta-G solvation = -21937.260967 eV Core-core repulsion = 18542.858803 eV Total energy + Delta-G solvation = -3394.402164 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.067 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -37.65201 -37.60071 -36.78518 -35.77393 -35.29619 -34.09698 -32.66814 -30.31606 -29.52418 -28.82923 -25.90823 -25.47413 -21.55814 -21.20596 -19.23587 -18.72956 -17.71882 -17.59374 -17.05827 -16.73052 -16.10310 -15.55022 -14.62265 -14.35412 -14.20858 -14.10177 -13.48283 -13.38641 -13.27752 -12.96960 -12.73498 -12.48838 -12.26589 -11.93383 -11.80422 -11.58456 -11.51143 -11.41250 -11.35250 -11.27828 -10.93689 -10.51873 -10.33852 -10.03311 -9.95150 -9.76796 -9.54955 -9.29163 -8.01208 -7.75254 -7.19268 -4.85339 0.88948 2.18157 2.51534 2.74144 2.83999 2.85862 2.89008 2.91668 2.94034 3.00135 3.61787 3.66558 3.89212 4.18650 4.35153 4.53563 4.80157 4.80221 5.23924 5.28093 5.34413 5.51004 5.83705 5.99317 6.06046 6.07980 6.36596 6.63551 6.67866 6.89194 6.99086 7.28627 7.36874 7.47626 7.58316 7.72036 7.77219 7.91480 8.27140 8.46157 8.59836 9.71910 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.023364 B = 0.004261 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.119747 B = 6569.119074 C = 6855.275479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.218 4.218 3 C 0.227 3.773 4 N -0.995 5.995 5 C 0.220 3.780 6 C 0.195 3.805 7 N -0.425 5.425 8 S 2.680 3.320 9 O -0.973 6.973 10 O -0.972 6.972 11 C -0.782 4.782 12 C 0.000 4.000 13 C -0.236 4.236 14 C 0.140 3.860 15 C -0.433 4.433 16 H 0.088 0.912 17 C 0.072 3.928 18 N -0.762 5.762 19 Si 0.916 3.084 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.182 4.182 24 C -0.008 4.008 25 H 0.216 0.784 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.290 0.710 33 H 0.122 0.878 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 8.161 3.980 9.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.219 4.219 3 C 0.103 3.897 4 N -0.827 5.827 5 C 0.091 3.909 6 C -0.126 4.126 7 N -0.103 5.103 8 S 2.782 3.218 9 O -0.964 6.964 10 O -0.963 6.963 11 C -0.879 4.879 12 C -0.020 4.020 13 C -0.257 4.257 14 C 0.136 3.864 15 C -0.460 4.460 16 H 0.106 0.894 17 C -0.151 4.151 18 N -0.384 5.384 19 Si 0.739 3.261 20 H -0.180 1.180 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.202 4.202 24 C -0.029 4.029 25 H 0.233 0.767 26 H 0.118 0.882 27 H 0.136 0.864 28 H 0.143 0.857 29 H 0.147 0.853 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.643 8.656 3.750 9.455 hybrid contribution -2.129 -0.747 -0.150 2.261 sum -1.487 7.909 3.600 8.816 Atomic orbital electron populations 1.24934 0.95886 0.98224 0.99398 1.23387 0.94757 1.02225 1.01574 1.18197 0.83944 0.90039 0.97570 1.58123 1.81040 1.29989 1.13530 1.18609 0.87168 1.03218 0.81893 1.29898 0.95445 0.93367 0.93884 1.81113 1.11559 1.10266 1.07356 1.01817 0.75165 0.72108 0.72734 1.93513 1.61902 1.73333 1.67634 1.93490 1.84584 1.83933 1.34246 1.28974 1.26068 1.25205 1.07652 1.20140 0.95127 0.92526 0.94212 1.21012 0.97169 1.05687 1.01833 1.17853 0.90172 0.87960 0.90382 1.19994 1.07033 1.25169 0.93815 0.89366 1.26151 1.00356 0.93629 0.94935 1.69830 1.37146 1.31612 0.99834 0.86114 0.80760 0.79081 0.80124 1.17951 1.19218 1.19496 1.21310 0.98480 0.99123 1.01308 1.20191 0.92922 0.96060 0.93690 0.76736 0.88188 0.86392 0.85674 0.85286 0.87795 0.88153 0.89919 0.86060 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 19.25 29.55 0.57 -1.48 16 2 C -0.22 -2.78 13.67 -37.12 -0.51 -3.29 16 3 C 0.23 2.67 6.15 -6.83 -0.04 2.62 16 4 N -1.00 -13.37 2.71 -120.63 -0.33 -13.70 16 5 C 0.22 2.32 5.81 -6.83 -0.04 2.28 16 6 C 0.19 2.50 15.76 -20.79 -0.33 2.17 16 7 N -0.42 -6.52 18.53 42.12 0.78 -5.74 16 8 S 2.68 48.51 5.64 -107.50 -0.61 47.90 16 9 O -0.97 -19.22 16.24 -57.17 -0.93 -20.14 16 10 O -0.97 -19.72 15.81 -57.17 -0.90 -20.63 16 11 C -0.78 -16.00 6.00 -39.29 -0.24 -16.24 16 12 C 0.00 0.00 9.49 -39.66 -0.38 -0.37 16 13 C -0.24 -5.22 9.80 -38.87 -0.38 -5.60 16 14 C 0.14 3.36 5.57 -106.83 -0.60 2.76 16 15 C -0.43 -10.11 9.05 -37.74 -0.34 -10.46 16 16 H 0.09 1.95 7.91 -52.49 -0.41 1.53 16 17 C 0.07 1.59 5.14 -17.34 -0.09 1.50 16 18 N -0.76 -17.62 10.95 55.55 0.61 -17.01 16 19 Si 0.92 16.28 29.59 -169.99 -5.03 11.25 16 20 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 21 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 22 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 23 C -0.18 -4.31 8.70 -38.87 -0.34 -4.64 16 24 C -0.01 -0.18 9.49 -39.66 -0.38 -0.56 16 25 H 0.22 2.09 7.80 -54.10 -0.42 1.67 16 26 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 27 H 0.12 1.44 6.92 -51.92 -0.36 1.08 16 28 H 0.13 0.86 8.11 -51.93 -0.42 0.44 16 29 H 0.13 1.24 7.61 -51.93 -0.40 0.84 16 30 H 0.10 1.85 7.60 -52.49 -0.40 1.45 16 31 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 32 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 33 H 0.12 2.93 6.16 -52.48 -0.32 2.61 16 34 H 0.10 2.09 7.60 -52.49 -0.40 1.69 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -30.49 328.84 -7.64 -38.13 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -3.11 Total: 6.28 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: -3.08 Total: -31.30 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 1.06 Total: -36.45 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.83 Total: -40.77 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 16 Polarization: 48.51 SS G_CDS: -0.61 Total: 47.90 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.49 -7.64 -38.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394015378.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.554 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds