Wall clock time and date at job start Tue Mar 31 2020 08:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47258 * 324.59059 * 3 2 1 5 5 C 1.46501 * 119.99957 * 274.99955 * 4 3 2 6 6 C 1.47202 * 109.47084 * 275.00040 * 5 4 3 7 7 N 5.22906 * 147.56335 * 268.26405 * 2 1 3 8 8 S 1.65601 * 119.99718 * 95.00024 * 4 3 2 9 9 O 1.42109 * 106.39857 * 156.46243 * 8 4 3 10 10 O 1.42100 * 106.40575 * 23.54069 * 8 4 3 11 11 C 1.76200 * 107.21684 * 269.99829 * 8 4 3 12 12 C 1.38634 * 119.75186 * 270.29707 * 11 8 4 13 13 C 1.37613 * 120.24846 * 180.30382 * 12 11 8 14 14 C 1.40718 * 119.74556 * 359.42742 * 13 12 11 15 15 C 1.41391 * 120.24500 * 180.29972 * 14 13 12 16 16 H 1.08002 * 120.00244 * 24.37367 * 15 14 13 17 17 C 1.39949 * 120.00129 * 204.37426 * 15 14 13 18 18 N 1.30826 * 119.99793 * 17.85075 * 17 15 14 19 19 Si 1.86793 * 120.00334 * 197.85319 * 17 15 14 20 20 H 1.48509 * 109.47143 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47452 * 119.99621 * 19 17 15 22 22 H 1.48495 * 109.47595 * 239.99938 * 19 17 15 23 23 C 1.40709 * 119.51000 * 0.27602 * 14 13 12 24 24 C 1.37623 * 119.74844 * 0.02562 * 23 14 13 25 25 H 4.40639 * 5.51369 * 180.02562 * 4 1 2 26 26 H 1.09003 * 109.46917 * 204.58704 * 3 2 1 27 27 H 1.09007 * 109.47146 * 84.59125 * 3 2 1 28 28 H 1.09003 * 109.46539 * 35.00062 * 5 4 3 29 29 H 1.08997 * 109.46698 * 154.99961 * 5 4 3 30 30 H 1.07999 * 119.87525 * 0.02562 * 12 11 8 31 31 H 1.07998 * 120.13001 * 179.70224 * 13 12 11 32 32 H 0.97001 * 120.00110 * 179.97438 * 18 17 15 33 33 H 1.08004 * 120.13035 * 180.02562 * 23 14 13 34 34 H 1.07996 * 119.87669 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1249 0.8003 5 6 3.2748 -0.9854 2.2519 6 6 4.5800 -0.3801 2.5632 7 7 5.5873 0.0850 2.8034 8 16 3.5294 -2.5547 0.0640 9 8 4.4459 -3.2118 0.9287 10 8 3.8266 -2.2405 -1.2896 11 6 2.0732 -3.5463 0.0364 12 6 1.7997 -4.3967 1.0966 13 6 0.6685 -5.1803 1.0828 14 6 -0.2182 -5.1071 -0.0073 15 6 -1.3868 -5.9028 -0.0295 16 1 -1.8174 -6.2558 0.8960 17 6 -1.9856 -6.2329 -1.2505 18 7 -1.3072 -6.1198 -2.3634 19 14 -3.7534 -6.8350 -1.2915 20 1 -4.2954 -6.8731 0.0906 21 1 -4.5717 -5.9119 -2.1182 22 1 -3.7987 -8.1979 -1.8792 23 6 0.0663 -4.2359 -1.0750 24 6 1.2067 -3.4661 -1.0429 25 1 -1.0498 -0.0004 0.0000 26 1 3.0089 0.9353 0.4276 27 1 3.0094 -0.0961 -1.0232 28 1 2.4779 -0.3472 2.6340 29 1 3.2092 -1.9679 2.7193 30 1 2.4793 -4.4476 1.9345 31 1 0.4598 -5.8456 1.9076 32 1 -1.7220 -6.3490 -3.2098 33 1 -0.6076 -4.1715 -1.9165 34 1 1.4269 -2.7964 -1.8610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394015378.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:17 Heat of formation + Delta-G solvation = 11.964746 kcal Electronic energy + Delta-G solvation = -21938.061303 eV Core-core repulsion = 18542.858803 eV Total energy + Delta-G solvation = -3395.202500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.32296 -38.66864 -38.30406 -36.88252 -36.82454 -35.76234 -33.64483 -32.01764 -31.22877 -29.77274 -27.58960 -26.53576 -23.23081 -22.90696 -20.51359 -19.74183 -19.38188 -19.01637 -18.23170 -17.99244 -17.27011 -17.14699 -16.03104 -15.80009 -15.33310 -15.20807 -15.10539 -14.89062 -14.38422 -14.12154 -14.01618 -13.92938 -13.81631 -13.48911 -13.22054 -13.11772 -12.94409 -12.90863 -12.84295 -12.53898 -12.42249 -11.98192 -11.52759 -11.42871 -11.27977 -11.18780 -10.96496 -10.60651 -9.72583 -9.47312 -8.83483 -6.60184 -0.52546 0.53187 1.13676 1.36599 1.40252 1.48642 1.55613 1.75871 1.92654 2.04388 2.14161 2.40006 2.60686 2.82110 3.03788 3.41742 3.57355 3.63347 3.82940 4.33518 4.37993 4.39363 4.54011 4.65089 4.85986 4.93898 4.98062 5.13486 5.19524 5.29200 5.39200 5.58773 5.66215 5.83615 5.99781 6.21262 6.49347 6.55289 6.73933 6.82351 6.87159 8.11348 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.023364 B = 0.004261 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.119747 B = 6569.119074 C = 6855.275479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.234 4.234 3 C 0.222 3.778 4 N -0.987 5.987 5 C 0.213 3.787 6 C 0.217 3.783 7 N -0.471 5.471 8 S 2.709 3.291 9 O -0.988 6.988 10 O -0.996 6.996 11 C -0.788 4.788 12 C 0.001 3.999 13 C -0.254 4.254 14 C 0.114 3.886 15 C -0.465 4.465 16 H 0.092 0.908 17 C 0.036 3.964 18 N -0.799 5.799 19 Si 0.989 3.011 20 H -0.251 1.251 21 H -0.262 1.262 22 H -0.266 1.266 23 C -0.204 4.204 24 C -0.011 4.011 25 H 0.233 0.767 26 H 0.138 0.862 27 H 0.112 0.888 28 H 0.172 0.828 29 H 0.144 0.856 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.297 0.703 33 H 0.107 0.893 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 9.013 5.100 10.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.235 4.235 3 C 0.099 3.901 4 N -0.822 5.822 5 C 0.085 3.915 6 C -0.103 4.103 7 N -0.150 5.150 8 S 2.808 3.192 9 O -0.978 6.978 10 O -0.986 6.986 11 C -0.882 4.882 12 C -0.019 4.019 13 C -0.274 4.274 14 C 0.110 3.890 15 C -0.492 4.492 16 H 0.110 0.890 17 C -0.184 4.184 18 N -0.423 5.423 19 Si 0.808 3.192 20 H -0.175 1.175 21 H -0.186 1.186 22 H -0.191 1.191 23 C -0.225 4.225 24 C -0.031 4.031 25 H 0.249 0.751 26 H 0.156 0.844 27 H 0.130 0.870 28 H 0.189 0.811 29 H 0.162 0.838 30 H 0.151 0.849 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.096 9.482 4.871 10.660 hybrid contribution -1.839 -0.889 -0.469 2.096 sum -1.743 8.593 4.402 9.811 Atomic orbital electron populations 1.25555 0.96761 0.97770 0.99002 1.23659 0.95261 1.02651 1.01975 1.18476 0.83552 0.90621 0.97468 1.57650 1.80788 1.28625 1.15109 1.19173 0.87296 1.05068 0.79930 1.30220 0.95250 0.92161 0.92625 1.81149 1.12995 1.12087 1.08756 1.00919 0.73825 0.72378 0.72115 1.93493 1.61942 1.74548 1.67828 1.93461 1.84590 1.84397 1.36162 1.29448 1.26111 1.25760 1.06854 1.20479 0.94910 0.91528 0.94978 1.21255 0.97694 1.06524 1.01926 1.18185 0.91107 0.88505 0.91159 1.20260 1.07903 1.26350 0.94721 0.88953 1.26985 1.04106 0.93206 0.94073 1.69872 1.39003 1.32751 1.00629 0.85043 0.75405 0.78503 0.80212 1.17453 1.18621 1.19099 1.21289 0.99413 1.00374 1.01402 1.20316 0.92725 0.95716 0.94392 0.75083 0.84410 0.87039 0.81059 0.83837 0.84858 0.86980 0.89189 0.87524 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 19.25 74.32 1.43 -2.52 16 2 C -0.23 -5.45 13.67 31.13 0.43 -5.02 16 3 C 0.22 4.61 6.15 84.57 0.52 5.13 16 4 N -0.99 -23.68 2.71 -535.55 -1.45 -25.13 16 5 C 0.21 3.68 5.81 84.57 0.49 4.17 16 6 C 0.22 4.97 15.76 89.45 1.41 6.37 16 7 N -0.47 -13.59 18.53 20.00 0.37 -13.22 16 8 S 2.71 93.16 5.64 -56.49 -0.32 92.84 16 9 O -0.99 -36.85 16.24 -128.00 -2.08 -38.93 16 10 O -1.00 -39.34 15.81 -128.00 -2.02 -41.36 16 11 C -0.79 -31.45 6.00 22.46 0.13 -31.31 16 12 C 0.00 0.03 9.49 22.22 0.21 0.24 16 13 C -0.25 -11.16 9.80 22.73 0.22 -10.94 16 14 C 0.11 5.57 5.57 -21.29 -0.12 5.45 16 15 C -0.47 -22.18 9.05 23.46 0.21 -21.97 16 16 H 0.09 4.14 7.91 -2.91 -0.02 4.11 16 17 C 0.04 1.59 5.14 85.26 0.44 2.03 16 18 N -0.80 -37.93 10.95 21.83 0.24 -37.69 16 19 Si 0.99 33.28 29.59 68.60 2.03 35.31 16 20 H -0.25 -8.16 7.11 99.48 0.71 -7.46 16 21 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 22 H -0.27 -8.73 7.11 99.48 0.71 -8.02 16 23 C -0.20 -9.95 8.70 22.73 0.20 -9.75 16 24 C -0.01 -0.50 9.49 22.22 0.21 -0.29 16 25 H 0.23 4.13 7.80 -4.43 -0.03 4.10 16 26 H 0.14 1.86 8.11 -2.39 -0.02 1.84 16 27 H 0.11 2.51 6.92 -2.38 -0.02 2.50 16 28 H 0.17 1.49 8.11 -2.39 -0.02 1.47 16 29 H 0.14 2.18 7.61 -2.39 -0.02 2.16 16 30 H 0.13 4.40 7.60 -2.91 -0.02 4.38 16 31 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 32 H 0.30 12.55 8.30 -92.71 -0.77 11.78 16 33 H 0.11 5.40 6.16 -2.91 -0.02 5.38 16 34 H 0.11 4.46 7.60 -2.91 -0.02 4.43 16 Total: -1.00 -66.89 328.84 3.69 -63.19 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 1.14 Total: 23.39 kcal Atomic # 6 Polarization: -64.19 SS G_CDS: 5.79 Total: -58.40 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -0.84 Total: -76.05 kcal Atomic # 8 Polarization: -76.19 SS G_CDS: -4.10 Total: -80.29 kcal Atomic # 14 Polarization: 33.28 SS G_CDS: 2.03 Total: 35.31 kcal Atomic # 16 Polarization: 93.16 SS G_CDS: -0.32 Total: 92.84 kcal Total: -66.89 3.69 -63.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394015378.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.158 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds