Wall clock time and date at job start Tue Mar 31 2020 08:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46800 * 2 1 4 4 N 1.46500 * 109.46868 * 120.00184 * 2 1 3 5 5 S 1.65597 * 120.00040 * 263.87183 * 4 2 1 6 6 O 1.42094 * 106.40335 * 182.74737 * 5 4 2 7 7 O 1.42102 * 106.40143 * 49.82846 * 5 4 2 8 8 N 1.65601 * 107.21878 * 296.28718 * 5 4 2 9 9 C 1.46501 * 119.99892 * 95.48271 * 8 5 4 10 10 C 1.46500 * 119.99807 * 275.20424 * 8 5 4 11 11 C 1.50700 * 109.46997 * 95.22762 * 10 8 5 12 12 H 1.07998 * 119.99660 * 4.85181 * 11 10 8 13 13 C 1.37871 * 120.00044 * 184.85604 * 11 10 8 14 14 N 1.31517 * 120.00061 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00174 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47116 * 60.00355 * 15 13 11 17 17 H 1.48501 * 109.47302 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47208 * 300.00333 * 15 13 11 19 19 C 1.50697 * 109.47314 * 240.00200 * 2 1 3 20 20 C 1.38428 * 122.53886 * 99.73416 * 19 2 1 21 21 C 1.33387 * 114.91910 * 179.76003 * 20 19 2 22 22 S 1.75883 * 109.59429 * 0.48263 * 21 20 19 23 23 C 1.33382 * 122.54071 * 280.02735 * 19 2 1 24 24 H 1.09004 * 109.47079 * 185.04564 * 1 2 3 25 25 H 1.09000 * 109.47172 * 305.04032 * 1 2 3 26 26 H 1.09003 * 109.47206 * 65.04595 * 1 2 3 27 27 H 0.96998 * 120.00071 * 83.88270 * 4 2 1 28 28 H 1.09008 * 109.47115 * 90.00345 * 9 8 5 29 29 H 1.09001 * 109.47387 * 209.99414 * 9 8 5 30 30 H 1.08995 * 109.47391 * 330.00189 * 9 8 5 31 31 H 1.09001 * 109.46843 * 215.21929 * 10 8 5 32 32 H 1.08997 * 109.47334 * 335.22593 * 10 8 5 33 33 H 0.96997 * 119.99842 * 179.97438 * 14 13 11 34 34 H 1.08001 * 122.53728 * 359.97438 * 20 19 2 35 35 H 1.08002 * 125.20110 * 180.20739 * 21 20 19 36 36 H 1.08005 * 125.20581 * 359.97438 * 23 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1962 5 16 2.4386 0.1794 2.5410 6 8 2.9261 -0.7592 3.4899 7 8 1.3544 1.0593 2.8047 8 7 3.7255 1.1346 2.1244 9 6 3.5036 2.5211 1.7064 10 6 5.0864 0.5951 2.1798 11 6 5.4840 0.0941 0.8152 12 1 4.8242 0.2405 -0.0271 13 6 6.6901 -0.5512 0.6422 14 7 7.4933 -0.7300 1.6682 15 14 7.1826 -1.1729 -1.0490 16 1 7.2476 -0.0312 -1.9965 17 1 8.5139 -1.8259 -0.9681 18 1 6.1777 -2.1563 -1.5270 19 6 2.0324 -0.7103 -1.2305 20 6 2.4666 -0.0323 -2.3565 21 6 2.8839 -0.8114 -3.3556 22 16 2.7231 -2.5006 -2.8930 23 6 2.0870 -2.0401 -1.3192 24 1 -0.3633 -1.0237 0.0904 25 1 -0.3633 0.5900 0.8414 26 1 -0.3634 0.4336 -0.9317 27 1 2.0955 -1.6575 1.2004 28 1 3.5358 3.1734 2.5792 29 1 4.2815 2.8174 1.0027 30 1 2.5286 2.6043 1.2265 31 1 5.7755 1.3791 2.4939 32 1 5.1223 -0.2278 2.8936 33 1 8.3416 -1.1844 1.5465 34 1 2.4706 1.0458 -2.4198 35 1 3.2586 -0.4588 -4.3052 36 1 1.7869 -2.7288 -0.5432 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619751934.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:03 Heat of formation + Delta-G solvation = -42.865785 kcal Electronic energy + Delta-G solvation = -21931.339236 eV Core-core repulsion = 18669.203058 eV Total energy + Delta-G solvation = -3262.136179 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 304.070 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.71577 -36.62199 -35.48679 -35.20697 -34.82024 -32.46633 -29.77374 -28.77632 -27.77324 -25.06975 -24.65869 -22.27778 -21.74163 -19.10298 -18.64257 -17.77228 -16.84432 -16.68331 -16.25498 -16.24585 -15.13944 -14.49543 -14.15711 -13.84013 -13.47157 -13.30714 -13.13285 -12.82060 -12.63025 -12.28024 -12.27198 -12.17560 -11.87547 -11.71356 -11.46855 -11.37160 -11.14800 -11.13570 -11.09427 -10.78160 -10.51127 -10.46619 -10.10624 -9.76224 -9.24870 -8.62890 -8.47536 -8.22180 -8.02644 -6.08815 -4.14797 1.17854 1.32360 1.82709 2.13822 2.84933 3.27687 3.32787 3.35399 3.55485 4.18586 4.39170 4.81767 5.00059 5.14804 5.21275 5.25704 5.39928 5.44828 5.53291 5.68464 5.74789 5.91924 6.01286 6.04970 6.21735 6.29028 6.31292 6.54778 6.56641 6.66837 7.21989 7.39625 7.47319 7.65995 7.88618 8.17296 8.90775 9.51532 10.99165 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.009491 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.834025 B = 2949.360228 C = 4835.333233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.220 3.780 3 H 0.090 0.910 4 N -1.117 6.117 5 S 2.789 3.211 6 O -0.981 6.981 7 O -0.999 6.999 8 N -0.996 5.996 9 C 0.103 3.897 10 C 0.245 3.755 11 C -0.534 4.534 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.270 1.270 19 C -0.096 4.096 20 C -0.120 4.120 21 C -0.212 4.212 22 S 0.084 5.916 23 C -0.195 4.195 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.412 0.588 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.697 0.971 -8.336 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.110 3.890 3 H 0.107 0.893 4 N -0.874 5.874 5 S 2.796 3.204 6 O -0.965 6.965 7 O -0.983 6.983 8 N -0.839 5.839 9 C -0.043 4.043 10 C 0.123 3.877 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.714 3.286 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.195 1.195 19 C -0.110 4.110 20 C -0.151 4.151 21 C -0.348 4.348 22 S 0.348 5.652 23 C -0.331 4.331 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.245 0.755 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.179 0.821 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.624 -0.327 -8.139 14.194 hybrid contribution 0.643 0.503 -0.753 1.111 sum -10.981 0.176 -8.893 14.132 Atomic orbital electron populations 1.22313 0.94469 1.02837 1.02685 1.19155 0.93458 0.94935 0.81440 0.89253 1.56103 1.81999 1.19275 1.30064 1.01651 0.72694 0.72883 0.73151 1.93588 1.80898 1.63156 1.58895 1.93540 1.53955 1.66459 1.84336 1.57589 1.22412 1.20820 1.83067 1.21277 1.00853 0.82545 0.99651 1.19207 0.75665 0.95016 0.97777 1.21509 1.03580 1.37445 0.94817 0.91793 1.24925 0.96414 0.95713 0.96710 1.69928 1.10838 1.42234 1.29973 0.86721 0.77877 0.79379 0.84600 1.20284 1.21378 1.19516 1.18952 1.02446 0.93086 0.96526 1.20001 1.01380 1.01173 0.92509 1.25485 1.09482 0.95623 1.04183 1.84147 1.63188 1.07741 1.10136 1.25245 1.08428 0.98730 1.00677 0.92114 0.90911 0.91669 0.75496 0.93721 0.90830 0.92752 0.94738 0.93025 0.92624 0.84128 0.82072 0.82075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.50 37.16 0.35 -1.61 16 2 C 0.22 3.14 3.12 -69.08 -0.22 2.93 16 3 H 0.09 1.26 6.63 -51.93 -0.34 0.91 16 4 N -1.12 -18.25 5.48 -5.88 -0.03 -18.28 16 5 S 2.79 54.51 6.00 -107.50 -0.65 53.86 16 6 O -0.98 -22.74 16.81 -57.17 -0.96 -23.70 16 7 O -1.00 -19.70 16.52 -57.17 -0.94 -20.64 16 8 N -1.00 -20.28 3.23 -123.05 -0.40 -20.68 16 9 C 0.10 1.73 10.12 59.85 0.61 2.33 16 10 C 0.25 6.07 5.43 -5.19 -0.03 6.04 16 11 C -0.53 -13.86 9.38 -34.44 -0.32 -14.18 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 15 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 C -0.10 -1.39 4.86 -106.25 -0.52 -1.90 16 20 C -0.12 -1.64 9.95 -41.21 -0.41 -2.05 16 21 C -0.21 -2.80 11.23 29.04 0.33 -2.48 16 22 S 0.08 1.14 23.34 -107.50 -2.51 -1.37 16 23 C -0.19 -2.75 10.31 29.04 0.30 -2.45 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.41 6.25 7.47 -34.47 -0.26 6.00 16 28 H 0.04 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.05 0.78 6.58 -51.93 -0.34 0.44 16 31 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 32 H 0.05 1.42 6.98 -51.93 -0.36 1.06 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 36 H 0.16 1.99 7.26 -52.48 -0.38 1.61 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -32.23 330.48 -9.39 -41.62 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -4.59 Total: 4.90 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.01 Total: -11.69 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: 0.31 Total: -63.87 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -1.91 Total: -44.34 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 55.65 SS G_CDS: -3.15 Total: 52.50 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.23 -9.39 -41.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619751934.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.243 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds