Wall clock time and date at job start Tue Mar 31 2020 09:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86796 * 120.00182 * 2 1 4 4 H 1.48498 * 109.47336 * 269.99710 * 3 2 1 5 5 H 1.48501 * 109.46788 * 29.99606 * 3 2 1 6 6 H 1.48498 * 109.47588 * 149.99561 * 3 2 1 7 7 C 1.38652 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00297 * 180.02562 * 7 2 1 9 9 O 1.34836 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00053 * 185.06044 * 9 7 2 11 11 C 1.38960 * 120.03108 * 174.48125 * 10 9 7 12 12 C 1.38124 * 120.07563 * 179.97438 * 11 10 9 13 13 C 1.38199 * 120.14882 * 359.74455 * 12 11 10 14 14 C 1.38966 * 120.05348 * 0.51283 * 13 12 11 15 15 N 1.39677 * 120.03559 * 179.76713 * 14 13 12 16 16 C 1.46499 * 119.99770 * 359.71898 * 15 14 13 17 17 C 1.50704 * 109.46830 * 179.97438 * 16 15 14 18 18 C 1.38712 * 120.40172 * 90.00333 * 17 16 15 19 19 C 1.38567 * 118.43658 * 180.29647 * 18 17 16 20 20 C 1.38398 * 119.14968 * 359.45618 * 19 18 17 21 21 Cl 1.73591 * 119.63734 * 180.25403 * 20 19 18 22 22 N 1.31957 * 120.72676 * 0.55650 * 20 19 18 23 23 C 1.31905 * 121.70531 * 359.71446 * 22 20 19 24 24 C 1.38726 * 120.02943 * 354.45846 * 10 9 7 25 25 H 0.96997 * 120.00457 * 0.02562 * 1 2 3 26 26 H 1.07993 * 119.95896 * 359.95558 * 11 10 9 27 27 H 1.08000 * 119.92771 * 180.02562 * 12 11 10 28 28 H 1.07997 * 119.97306 * 180.27437 * 13 12 11 29 29 H 0.96996 * 119.99959 * 179.72022 * 15 14 13 30 30 H 1.09003 * 109.47176 * 60.00522 * 16 15 14 31 31 H 1.08995 * 109.47543 * 300.00084 * 16 15 14 32 32 H 1.08006 * 120.77980 * 0.02562 * 18 17 16 33 33 H 1.07997 * 120.42561 * 179.71766 * 19 18 17 34 34 H 1.07998 * 119.60262 * 180.02562 * 23 22 20 35 35 H 1.07997 * 120.06934 * 0.04225 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4469 2.6526 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0699 -3.5046 0.1078 11 6 1.4353 -4.7348 0.2297 12 6 2.1824 -5.8914 0.3384 13 6 3.5630 -5.8301 0.3209 14 6 4.2037 -4.6024 0.2045 15 7 5.5990 -4.5405 0.1918 16 6 6.3878 -5.7696 0.3073 17 6 7.8556 -5.4301 0.2666 18 6 8.5455 -5.1561 1.4384 19 6 9.8925 -4.8427 1.3531 20 6 10.5032 -4.8246 0.1113 21 17 12.1916 -4.4401 -0.0096 22 7 9.8147 -5.0908 -0.9826 23 6 8.5302 -5.3876 -0.9382 24 6 3.4555 -3.4386 0.0952 25 1 -0.4851 0.8400 -0.0004 26 1 0.3566 -4.7865 0.2399 27 1 1.6867 -6.8462 0.4327 28 1 4.1443 -6.7366 0.4015 29 1 6.0457 -3.6837 0.1064 30 1 6.1463 -6.4355 -0.5212 31 1 6.1548 -6.2636 1.2505 32 1 8.0434 -5.1822 2.3943 33 1 10.4596 -4.6194 2.2447 34 1 7.9998 -5.6001 -1.8546 35 1 3.9510 -2.4836 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749262904.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:46 Heat of formation + Delta-G solvation = 10.815416 kcal Electronic energy + Delta-G solvation = -20622.632779 eV Core-core repulsion = 17225.336734 eV Total energy + Delta-G solvation = -3397.296045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 304.072 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44696 -40.68765 -38.72877 -37.74820 -36.33064 -34.25852 -33.74453 -32.72541 -30.71687 -29.65578 -27.27534 -26.78336 -24.88238 -23.65005 -23.08780 -21.99974 -19.75361 -19.06504 -18.49869 -17.87956 -17.41432 -16.73730 -16.35956 -16.01846 -15.85652 -15.51573 -15.45286 -15.27228 -14.77826 -14.57058 -14.38338 -14.24070 -14.05768 -13.48019 -13.04542 -12.82737 -12.75241 -12.54137 -12.44711 -12.36772 -12.17922 -12.02918 -11.28732 -11.03802 -10.97655 -10.71985 -10.57676 -10.03086 -9.07158 -8.44404 -8.22202 -6.12385 -0.28550 0.08983 0.73161 0.79908 0.95067 1.34454 1.44555 1.51633 2.18752 2.32802 2.83702 2.91221 3.29859 3.38153 3.55623 3.62690 3.79343 3.86016 3.95447 4.24425 4.44481 4.50459 4.63923 4.65682 4.68519 4.77460 4.82798 5.07888 5.12709 5.16611 5.18133 5.40629 5.48259 5.78188 5.84530 6.04735 6.13755 6.58385 6.60830 6.81954 7.01282 7.85582 8.79394 Molecular weight = 304.07amu Principal moments of inertia in cm(-1) A = 0.014518 B = 0.003039 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.194346 B = 9210.644130 C =10842.077517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.024 4.024 3 Si 1.016 2.984 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.408 4.408 8 H 0.099 0.901 9 O -0.234 6.234 10 C 0.150 3.850 11 C -0.262 4.262 12 C -0.027 4.027 13 C -0.260 4.260 14 C 0.258 3.742 15 N -0.743 5.743 16 C 0.176 3.824 17 C -0.147 4.147 18 C -0.039 4.039 19 C -0.152 4.152 20 C 0.160 3.840 21 Cl -0.035 7.035 22 N -0.508 5.508 23 C 0.130 3.870 24 C -0.316 4.316 25 H 0.272 0.728 26 H 0.104 0.896 27 H 0.152 0.848 28 H 0.149 0.851 29 H 0.397 0.603 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.178 0.822 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.466 -13.007 3.581 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.221 4.221 3 Si 0.836 3.164 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.116 0.884 9 O -0.140 6.140 10 C 0.099 3.901 11 C -0.282 4.282 12 C -0.045 4.045 13 C -0.282 4.282 14 C 0.155 3.845 15 N -0.373 5.373 16 C 0.052 3.948 17 C -0.150 4.150 18 C -0.065 4.065 19 C -0.173 4.173 20 C -0.004 4.004 21 Cl -0.006 7.006 22 N -0.219 5.219 23 C -0.027 4.027 24 C -0.340 4.340 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.231 0.769 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.189 0.811 33 H 0.188 0.812 34 H 0.195 0.805 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 21.743 -12.981 2.764 25.474 hybrid contribution -0.083 1.458 0.457 1.530 sum 21.660 -11.523 3.221 24.745 Atomic orbital electron populations 1.70185 1.07987 1.28658 1.49308 1.26548 0.96816 1.02653 0.96102 0.84619 0.77796 0.74823 0.79168 1.18942 1.19557 1.17775 1.21767 0.92355 0.81533 1.52805 0.88371 1.83949 1.35986 1.12687 1.81413 1.19669 0.90936 0.87692 0.91823 1.20284 0.99596 0.90853 1.17516 1.20850 0.93556 0.96723 0.93379 1.20592 0.94400 0.95940 1.17291 1.17468 0.83598 0.92720 0.90723 1.44637 1.01375 1.09017 1.82267 1.20185 0.83943 0.86875 1.03751 1.20997 0.97169 1.02424 0.94400 1.21928 0.92838 0.91840 0.99911 1.22140 0.96015 1.01546 0.97571 1.22002 0.88357 0.99109 0.90950 1.98410 1.11710 1.91940 1.98566 1.67043 1.09610 1.13256 1.32034 1.22932 0.87905 0.93060 0.98830 1.20507 0.93035 0.98319 1.22092 0.91933 0.87804 0.82993 0.83306 0.76876 0.89723 0.89420 0.81119 0.81237 0.80515 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.40 13.67 21.61 0.30 -57.11 16 2 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 3 Si 1.02 43.40 29.55 68.60 2.03 45.43 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.41 -24.10 9.49 67.92 0.64 -23.45 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -14.32 9.76 -22.80 -0.22 -14.55 16 10 C 0.15 7.55 6.65 22.56 0.15 7.70 16 11 C -0.26 -11.24 9.99 22.42 0.22 -11.01 16 12 C -0.03 -0.85 10.03 22.23 0.22 -0.63 16 13 C -0.26 -7.46 9.31 22.43 0.21 -7.25 16 14 C 0.26 8.40 6.65 38.20 0.25 8.65 16 15 N -0.74 -17.40 5.72 -343.18 -1.96 -19.37 16 16 C 0.18 2.66 5.06 85.63 0.43 3.09 16 17 C -0.15 -2.12 5.27 -19.77 -0.10 -2.23 16 18 C -0.04 -0.48 9.86 22.46 0.22 -0.26 16 19 C -0.15 -2.04 9.88 22.39 0.22 -1.82 16 20 C 0.16 2.94 7.27 84.71 0.62 3.56 16 21 Cl -0.03 -0.60 29.11 -2.72 -0.08 -0.68 16 22 N -0.51 -10.67 10.34 -186.70 -1.93 -12.60 16 23 C 0.13 2.22 10.86 84.66 0.92 3.13 16 24 C -0.32 -13.64 9.01 22.52 0.20 -13.43 16 25 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.10 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 28 H 0.15 3.03 6.72 -2.91 -0.02 3.01 16 29 H 0.40 9.39 8.47 -92.71 -0.79 8.60 16 30 H 0.08 1.13 7.89 -2.39 -0.02 1.11 16 31 H 0.09 1.11 7.91 -2.39 -0.02 1.09 16 32 H 0.17 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 35 H 0.11 4.95 5.63 -2.91 -0.02 4.93 16 Total: -1.00 -74.74 324.72 3.16 -71.57 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.36 Total: 22.17 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 4.68 Total: -34.87 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -3.60 Total: -89.08 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.22 Total: -14.55 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -74.74 3.16 -71.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749262904.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.389 kcal (2) G-P(sol) polarization free energy of solvation -74.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds